CcUC09G173000 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC09G173000
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionCytochrom_C_asm domain-containing protein
LocationCicolChr09: 9464686 .. 9466852 (+)
RNA-Seq ExpressionCcUC09G173000
SyntenyCcUC09G173000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTGGCCAATGGAGTGAAGTCATGCGCTAAGCTGCTGAAGTCTTCAGAATCATTGTTCGTGAAATCAGGTTTCGTCACTTTGTTAGCTAGCATTTTAGATTTACTTTACCTTACGTTTTACAGTTCCTGCCTATGGTCTGAATTTGCAACAATCTTTCCGAAGTTCATAATAGTGTAGTTCTAGGATTTTCTCAAACAATTTTAAGTAAAGAAACAAGCAAATCATTAATCAATGTATAAGTAAACTGAAAGAAATTGTAAAAAACAACAAAAGATTATCATAAAATGCAGTTTTAGGAGACTAATGGAGCTTGAACATTATTACAAATACTGGAGACTAATAGCACTACTAAGAACGAGTGTATATATATATATATGAAAAGATATGTTTGCTAAAATGGATTGGTAGGTCTCTTTAGTGGGTTGTGAGATAGGTTATTTTCTCTCATTTTACATGGGTCTTTCTCTTGGTAACAGTCTTAGAACTTTGTTGTATTGAGATTGGGCTGTGGAAGAGATTAAAAATGTCTATTCTTGTTGAACATGAATTTATCCTCTAAGGGAGTTCAGACAAACTTTTGTCTAGGACCTCTGGTGGCTTTGAATTTACCTCTCGACTTGCCATGGATGCTTATAGAAAAGTTTGTTGATGAAATTCCACATCTGAATCAGAGTCTCCAGTTAGTTCCAAAGCCTTTGACTTTCAACATCTCACTGAGGAAGTTCCAATCAACCTTGTTAAAAGCTTTTTCCACATCAAGTTTTATGACCACCTCCTTTTGTTTTTTCTTTGCCAAGCTTCAATGATCTCATTGGCTATGAGCAATGCATCCAATATTTGTCTTCCTTCCATAAATGCTGATTGGTGATCCATAATTGTCAAAACACATCTACAACTGTGGCAATAGGTGCGTGATTTGGTAATACACCAATTTGGCCACTATTCGTAACTAAAATGATTTCTTTCGCTTCTGAATCCCAAATAATTCGATTTGGAGTTCAGAACACTAAGATTTAAGGTCATGTCTTCAATTTGCTCTTCATTTCTAAGTTCGTAGCCTTCGCAGTAGCGTCATCGATGTTACCTACCAAATAAAAGACTTGTTTGGGAAGACCATCTAATTCTCCGAAAAGGATTAATTTAAACCCTCTAATTGTTTCTGCTAGGCCAGTGTATTTCCTGGGGGAACCAGTAAATACTTCTGCTACGAGAAAAGGTTGGGATAAGAAACACTCAATTTTTCATGCTCGTGCTACGTTTAAGCAATCCTCTTCGAATAATTCATCCAAGTATAGCTATAATGTCCTGCAGTTCTTTGTATTGTTGTGAGGTTTGTTTAACTCTTTGTGCAGCTTCATAATGTTCTTCACCAACGATTCGAATGAAAGGCCTTTTGTGAGTTAGTTTGAGAATACATGGGAGATCATTTTGTAAATACAAGTAAAGAGACTAATTGGTCTACAATCTTCAACTCTTCTAGCATTAGGTAGATATATGTTTCATTAACATTGGAGTTGATAATACCTTCATGAGAAGAAAAATCTTGGAGCACCCGAATTAGATCGCGTTGAGGATGTTCCAAATTTTTTTAAAGAACTCTGCATTGGAACCATCTGGTCTAGGAGATTTATGAGAGGCCAAAGCCTTAATTGCCAACCAGATTTCTTCTTCCGTGAAGGGATCTTCTGAACCCCTACTTTGCTCATTGCTTTTAAGTATCCCAATCGATAGGGAGTGGTAGAAATATGCTGCCTTGTTTCTTGGTGAAAAGATCCTTGTAGAAGGAAATAAATTCAGCCTCAATCTTGGTGTCTTGAAGTAGGCTAGTGTTCTATGCAGTGAGAACTTTTGTAATACTATTTTTTTCCTTTTTGTGGCAATAACATACTTATGGGAAAAACAAAAAAGTGGTGTTTTCATCCCTTTACGGAGCCATTTTGTCTTACATTTCTACCTCCATCTAATCTCCTCATCAGTTGTAATGTTAAGTAGTCTTTCTCTAATTGCAAATCTTGTTTCATTTAGGGCCTCTGGAAAGCTATTTTCTTCTCTCTCTTTAGCATTATATACCAATTCCTCGAGGGAAACTTTCTGCGATGTGTTAAATGTCGAAGTTGGTCAAGTTCCATTTCTTAAGGGCAGATTTCAACCCTTTTATTAA

mRNA sequence

ATGTCTTTGGCCAATGGAGTGAAGTCATGCGCTAAGCTGCTGAAGTCTTCAGAATCATTGTTCGTGAAATCAGGTTTCGTCACTTTGTTAGCTAGCATTTTAGATTTACTTTACCTTACGTTTTACAGTTCCTGCCTATGGCCAGTGTATTTCCTGGGGGAACCAGTAAATACTTCTGCTACGAGAAAAGGTTGGGATAAGAAACACTCAATTTTTCATGCTCGTGCTACGTTTAAGCAATCCTCTTCGAATAATTCATCCAAGTATAGCTATAATGTCCTGCAGTTCTTTGTATTGTTGGCCTCTGGAAAGCTATTTTCTTCTCTCTCTTTAGCATTATATACCAATTCCTCGAGGGAAACTTTCTGCGATGTGTTAAATGTCGAAGTTGGTCAAGTTCCATTTCTTAAGGGCAGATTTCAACCCTTTTATTAA

Coding sequence (CDS)

ATGTCTTTGGCCAATGGAGTGAAGTCATGCGCTAAGCTGCTGAAGTCTTCAGAATCATTGTTCGTGAAATCAGGTTTCGTCACTTTGTTAGCTAGCATTTTAGATTTACTTTACCTTACGTTTTACAGTTCCTGCCTATGGCCAGTGTATTTCCTGGGGGAACCAGTAAATACTTCTGCTACGAGAAAAGGTTGGGATAAGAAACACTCAATTTTTCATGCTCGTGCTACGTTTAAGCAATCCTCTTCGAATAATTCATCCAAGTATAGCTATAATGTCCTGCAGTTCTTTGTATTGTTGGCCTCTGGAAAGCTATTTTCTTCTCTCTCTTTAGCATTATATACCAATTCCTCGAGGGAAACTTTCTGCGATGTGTTAAATGTCGAAGTTGGTCAAGTTCCATTTCTTAAGGGCAGATTTCAACCCTTTTATTAA

Protein sequence

MSLANGVKSCAKLLKSSESLFVKSGFVTLLASILDLLYLTFYSSCLWPVYFLGEPVNTSATRKGWDKKHSIFHARATFKQSSSNNSSKYSYNVLQFFVLLASGKLFSSLSLALYTNSSRETFCDVLNVEVGQVPFLKGRFQPFY
Homology
[Close]
BLAST of CcUC09G173000 vs. NCBI nr
Match: KCW90640.1 (hypothetical protein EUGRSUZ_A02744 [Eucalyptus grandis])

HSP 1 Score: 62.4 bits (150), Expect = 3.7e-06
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 48 PVYFLGEPVNTSATRKGWDKKHSIFHARATFKQSSSNNSS 88
          P YF GE +NTSAT+KGWDKK SIF A AT K+SSS+NSS
Sbjct: 31 PTYFPGESINTSATKKGWDKKRSIFRALATVKRSSSDNSS 70

[Close]
BLAST of CcUC09G173000 vs. NCBI nr
Match: AAO74044.1 (ORF50f [Pinus koraiensis])

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-04
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 48 PVYFLGEPVNTSATRKGWDKKHSIFHARATFKQSSSNNSS 88
          P Y  GEPVNTSAT+KG D+K SIF A AT K+SSS+NSS
Sbjct: 3  PTYLPGEPVNTSATKKGCDRKRSIFLALATIKRSSSDNSS 42

[Close]
BLAST of CcUC09G173000 vs. NCBI nr
Match: PLY90581.1 (hypothetical protein LSAT_6X37840 [Lactuca sativa])

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-04
Identity = 39/87 (44.83%), Postives = 49/87 (56.32%), Query Frame = 0 

Query: 19  SLFVKSGFVTLLASILD--LLYLTFYSSCLW---------PVYFLGEPVNTSATRKGWDK 78
           S F  S F+  +  +L+  LL  +F  S L          P YF GEPVNTS T+KG DK
Sbjct: 166 SNFANSPFLARILFVLETRLLIPSFLESPLTEEIEAQEGIPTYFPGEPVNTSTTKKGCDK 225

Query: 79  KHSIFHARATFKQSSSNNSSKYSYNVL 95
           K SIF A AT K+SSS+NSS     ++
Sbjct: 226 KRSIFRALATVKRSSSDNSSNTRITII 252

[Close]
BLAST of CcUC09G173000 vs. ExPASy TrEMBL
Match: A0A059DJQ4 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02744 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 48 PVYFLGEPVNTSATRKGWDKKHSIFHARATFKQSSSNNSS 88
          P YF GE +NTSAT+KGWDKK SIF A AT K+SSS+NSS
Sbjct: 31 PTYFPGESINTSATKKGWDKKRSIFRALATVKRSSSDNSS 70

[Close]
BLAST of CcUC09G173000 vs. ExPASy TrEMBL
Match: Q85X22 (ORF50f OS=Pinus koraiensis OX=88728 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 9.9e-05
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 48 PVYFLGEPVNTSATRKGWDKKHSIFHARATFKQSSSNNSS 88
          P Y  GEPVNTSAT+KG D+K SIF A AT K+SSS+NSS
Sbjct: 3  PTYLPGEPVNTSATKKGCDRKRSIFLALATIKRSSSDNSS 42

[Close]
BLAST of CcUC09G173000 vs. ExPASy TrEMBL
Match: A0A2J6LTA0 (Cytochrom_C_asm domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_6X37840 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-04
Identity = 39/87 (44.83%), Postives = 49/87 (56.32%), Query Frame = 0 

Query: 19  SLFVKSGFVTLLASILD--LLYLTFYSSCLW---------PVYFLGEPVNTSATRKGWDK 78
           S F  S F+  +  +L+  LL  +F  S L          P YF GEPVNTS T+KG DK
Sbjct: 166 SNFANSPFLARILFVLETRLLIPSFLESPLTEEIEAQEGIPTYFPGEPVNTSTTKKGCDK 225

Query: 79  KHSIFHARATFKQSSSNNSSKYSYNVL 95
           K SIF A AT K+SSS+NSS     ++
Sbjct: 226 KRSIFRALATVKRSSSDNSSNTRITII 252

The following BLAST results are available for this feature:
BLAST of CcUC09G173000 vs. NCBI nr
Match NameE-valueIdentityDescription
KCW90640.13.7e-0672.50hypothetical protein EUGRSUZ_A02744 [Eucalyptus grandis][more]
AAO74044.12.0e-0470.00ORF50f [Pinus koraiensis][more]
PLY90581.13.5e-0444.83hypothetical protein LSAT_6X37840 [Lactuca sativa][more]
BLAST of CcUC09G173000 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC09G173000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A059DJQ41.8e-0672.50Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02744 PE=4 SV... [more]
Q85X229.9e-0570.00ORF50f OS=Pinus koraiensis OX=88728 PE=4 SV=1[more]
A0A2J6LTA01.7e-0444.83Cytochrom_C_asm domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_6X37... [more]
BLAST of CcUC09G173000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC09G173000.1CcUC09G173000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast