CcUC08G162300 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G162300
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RNA-binding protein 48
Location	CicolChr08: 29644828 .. 29656462 (-)
RNA-Seq Expression	CcUC08G162300
Synteny	CcUC08G162300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTACAATTTTCTCAAAATCTGATTTAAATAAAAAGAAAGAAAAAAATTAAAAGAAAAAGAAAATCGCATCAGACGCAATACGATTTTTCAAGCGTCCGATGTGGAGAAAATCCAACGGTGAGTCTTAAAGTATTGAAATACGCAGTTAGTAAGGGAGCTTAGCTTAGATTTGGGAACAAGAGCCAACCCCTTTCGACCGAGAAGACGCCATCTTCATCATATTCGCCTGAGGCATTCGAGAGCCGCGTTCGAAGAAGAATTAGGATTGACATGGGGAAGCAACCGGTTCGGATGAAGGCTGTGATCTACGCTTTATCGCCGTTCCAGCAGAAGATCATGACAGGGTTATGGAACGACTTGACCGGCAAGATTCACCATAAGATCTCCGAGAACTGGATCAGTGCGGCCCTTCTGATTACCCCCGTCGTCGGCACCTATACGTATTTTCTTTTTATCTCCTCGTTCCTTTCCTTATCTTTTTTCTTTATTTTTGAAATTTCGAACTTAGGGTTTGCTTGTCGATTGGTCTCCTCCTTTCATATTTCAAGCTGTTATCATTTAAAGAAAAAAAATCACGTCATCATTTGTTTCTCGAAGAGCCTAGTAAGTTTGTATTTACACTTGGTTGGGTCCAATTTAGATGAGATTTTATATCTTAATCAGATTCAAAGTGGAAATGCATAATTCCAACGACATGGAATTCTTGTCATGACTTGGTCTTTTCTGGACGTACCCTTAAGATCGAAAGTGAAATATTTCCCCCAAAGCTATCATATTTGAAATATTCACATTTACGAATTTCTAGCGGAACTGTGGGCAAATATTATGATTGATTTCATCTTATTGCACATAGAGGTTTGATTGATTGTTTAATCTTTGGAATGGAATAGAATGCTCTGGGTTGTTTTTTATTTTATTAAAAGTGTAGGCGTTGCTTCACTTGACTGAAACTGTTCCCAGGTCATATCAATCAGATTTTTAATCACTCTTCCCCCGTATGCGTATGGTTTTAATTGCTTTAGTCTGTCTTTAACCATTTAAGAGAAAGATTAGTTCTGTAGTGCTTAGGGTGGAAGTTATAATCTTTTCGATACACTAGAGGATAGACATTAAGAGGTACCATCCCCTCACGCAAGAGAAACTGGATCCGGGCAAGAGGTTTAAAAAACAATCCAAAACTCGTATTGGATGATAACGTGATGACTAACTCATGCTTTGTATTGTTGTTGTTCAAGTGAGACGTAAGAATAACATCTTTGTAGCAGAATGATGAAATGGGCATTACCATGCATGATGAAATTATATTTAAGAAATTTGAGCACTAGATGGGAATGGGAATGGTATGGTTGATTTTTCTTTTCCTCTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGTGGGGGGGTGGGTAAATCATCAAACGAAGTCCAAAATTTTCCTTCCCATCTGAAGTGTGCATAATGCATCAACATAGAGAAGATGTATCATGCTGTGTTAGCATTAGACAAGGCCTAATTTTTTATGGATTTTTTTAGACTCTGAACGAAGTATCAATTGCATACACATGTATAGGATGAATGACGTGTATTAGTTGATTGGTTGATTGATTGGTGGAGAATGTCATTGTGGTTAATGAACATGTGGAAGTATATCTTTTTGTAAACTTTTTTCCCCTTGTTTGGTTCTTAATGTTGATCTCCCACGCCCACGCATTGAAGGCATCATGTCTGCAAATGGATGCAGGTACGCACAGCAGTACAAGGAGAATGAAAAGTTGTCTCACAGGTACTGAGCGGCTGGTCCCTGGATGTGCCATCCATCTACTTGAAGAACATTTGGAGACTTTTTCGTTTTGAAAATGGAGGTCTGGTTTCTTAGACTATGAGGATGTGCTTTTATTTTGAGGAACATTTTCTCGCTTGTTTGTTGGAATAAATTACAACATTTTTTTGTCATGTGAAGACTATTATGAAAAGATCAGTGTTATGAAAAGATCAGTGTTACATTGCATGGTGCTTGCAGACTTCTAAAAACCATCCAAACTCTGGACTCTGTTTATATTCCATGATACCAAAGTATGTTCATGAACAAAGCCGCCAGGGTAGTATTTTGACGGTATCATATTCTATGTTCACACTATTATTTTACAAATTTGCCTTTATTTTATGGACATGACGATAATGTCAATAAGTTTCTCACCATATTTTTAAAACTACATTGACGTGGCACACAATAAATAATGGAGGTGGTTTGGAAAATTTTCCATACTATTATTTTCTCCCACCCTATTCATCATTTCTCCCTTATTTTTTCTAATCATTAACTTATCCTCTTTATTGTTTATTGTTTTCCAATTCGAAAATCGATACACTCGCATGGCACACGGATGGAAGAGATACAATGGGAGCACTATTGTTTTTTTGTTGGATCAACTAAAATTTATGGGTTATTTGTTGGATGTCATTTTGAAGAGTCAGAATCGTGAGAGCGACATCCAATCCTATATATTTATATGGGCACTTCCTCCATTTTTCATTAGGTGTGTGTAAAGTAATAGGGCAAAATTATAAGTTTGGGTATTGAAATTTTACGTCTCTAGTTCTCTTAATTTTGATAATAAGTCTAGCTTTTACATTCTTCAATTGGTTTTTTTAGCGAGATGCATAAATTGCAAATTTATAGTATCAAATTGGAAAAACAATTTTGTCCTAACCTTGTGATTATGTTATTTTTTATAAGAGCCTGTTGGTGTAAACAACTCAATATCAATAGTAAATACTATTGAAGTTTGCACAATTATTGAATAACTTCATCTTTTTATCTTTTTCTACTTTCACATTTATTGTAGAATTTTTTACATTTATTGAGTAATTATATCTTTACTTATTCTAATTTTATCTCATGTACATCAACATGTATATTTGATATATTTATATATTCAACTGATATACTTAATTTTTTTATTATCAATAAAGTATATAAAGTATCATGGTTTTAGTTACTTCACGGTAGAAGTTTTAGTCTATTTTGGTTCGTTCTTTTGATATGGAGTTGTTTTCAATCAATTCTCTAATCTAGGTTTTGGGATTTTTTTTTTAATGTATTCAGATTTTTTAATCTAATCTTGCTAGTAGATTTCGATTGCATTAATTGAGTTAGCTAATATGCCAAATATAAAATATATTAGCTAGATTGTTCTATTTTTTAATTTTTTTATATAATTTTGATGACATGTAAGTTATATTTAATTTAGTATATCAAATGCATAACATACGTATTTCATATTTGGTATATTGGTTGATTGAAAGATTAGATTTAGATAGAGAAAAGTATATCAACAATATTTTTTAGTATGAAATATATCATTCAAAATGAACATCAGGATAAATTCAAAATGCATTTCAAGTATATCATTAGTGTTTTAATAATGTATACTAAGGGCCAAAGCAAGTTTAGCTCAACAGTAATTGGCATGACCTTATGTTCTAGAGGTGGAAGATCCGATCCTCTGCCCCACAATTGTTGTATTAAAAAAAATGCAATAAGAATTTGGTTAATTTAAGAGAATTTGAGATTTAAAATTGGTAGATTTATTTATTATTATTATTTTGGAGTTGATTAGAGTATTTGGAATGACGGTAAAAGATTTGATTTGATGTGATAAAAAAAAATTAAATAAGTTCATATTTTTTGGTTTCAAGGATTTGAGATTTATTAGTAATTTATTAGGGAAAAGGGATTTTTATATATAAATAATATAATTTTGTTCTATTGAGAATGATGAAAAAGAAAACAGAAATAATTAATATATATATTATTATGTGGAATGTTTTGTGATTCATTATAAATTAGGAAGGTTTTGTTACTCTTTAGCATGGCAAAGTAAAGAATACTTGACACTATGAGTTTTGGGAGTAATCTCTTTTCTTTCCCACAATATTTGATAGCATGAAAGTGGAGTTCTAGTACATGAAAGTGATGTGCTAGGATTGTTATATGTGAAAGTGACATATAGCTAGAGAAAATTTGGGCGTCAAAAGTAGTGCATGCTTAGTGAGTTGAGCACATGTTTTCATGTTTTTAATTCTCTTGAAGTTTGCAATTCAAGATTTTAGTTTTTACCTTGTTAAATGTTTTCTACAAATTTATAGTTTTGTTTTAAATTTTAGGGATCCTCGATCGAAGATTTTCAATTATTTAGATCTAATAAAAGTTATTTAATTTTTAAAATTCTTTCGGTTTTAATCTAAATTATGAAAATGATCGTTTTGAAATGTTTGCATGCATGTAGTAACGACAATATTAGTCATAGGAAGTCAAACCGTTACAAATGTACTAGAAAATTAATACTCTAAAACAAATGAAGTAGAATTCATCGATAGTAACACGTGGGTGCATATATTGATTGATAAATTGTCATCCTGCATGGTAATTTTGGTACATCATCAACCAAATATAAAGTATATCCAATAATATATCAAAAATTATGCAGCTGAACCTTAATTAAATGTTGAAGGACAAATTCAACATTTCACCCTTTCTATTTGCAATCTCTCGTTTTGCAGAAGAGTTATATACTTATCTTTTAAAGGATATTTATTTATTTATTTTTAAGTACCGAAAGAGTTAAAGTTGAATTACAGGGGGAAAAAAAGTTAAGAATTTAATACTTAAGAGAACTTATTATTATTATCTGGAAGTAAGAGGAACCTATATTTTAGGAGCGTTTCAAATCTGTGGCAAATTAGAAAGGCGGAGTTAGATAATCGGAAATCGGAAATCGGATCTCGGAGAAGACGACTTGTTCGGGGATGCCTCGCTTTACAGACGAGCCCCCTGCGGTTCGCGTCTATACGGTTTGCGATGAGTCAAGGTCCACTCCGCCTCTGATATTTCTCCCCCGCAGAATCAGAGATCTATATGGCTTATATTTACATTGTTGATTGGGAAATTCAACAGGTATTTGACTGTGAGGAACGTCCCAGCATTGGGTTGTGGAGATGACTTGCTCAAATTGTTCTCCTCCTACGGAAACCTTGAAGAGTACTTTACTTCTCGTTTCCGTTCTTTTACTCATCTTTACAATGTTTGTTTTCCTTTAGCGTGCCTCAAAGCATTTGTTAATTGCCATACCTTCCATTACATTATTTTCTAATTTTTCAGAATTTTACTATAGATTCTTTTTGGGGGTGGGAGCTGTCGACCCATCCAGCAATTGCATAATAGTTCTTTAGCCGGTGGTGTCTCATCATATGGTTGCTTCATGTTTTCCCTGTTGGATTAGCTTCTGATAATTTATTATACCTCTCTTAAGAATATTCAACACCTCTTATGCCTACATATTTTCCTTTTATCTTATTTTATACTCTGTCAGGTGTACACCGATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTAAAATTTCATTTGGTCACCAATGCCAGGTACTTTGCAGCTTTGTTCTGGTTTTCTTTTGTTTTGAAGAATGCGTTATTGTGCCCCTGAGTTTGAACCAGAACAATTTAACTTTTAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTTCTTGGTAACCGGCTGCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTGTAAGTTAGGCTTTGGCATATATTTATGTTTATGATAGGAAAATGTTGCTTTAGGTACATCTGGAAGGTATCAACTTAAAAATCCAATACATCCACATTATAGTGGCGAAATGGTGTTTCCTTCCAATATTCCACTTTTAAGCATGTTATAAGTTTTTTTTGTCAGCTGGGAGACCAAGAGGATCTGCAGTTAGTTCAACAACCGCAAAGCTTCTAAATCCTTCTCATTCTCATTATACTCTTGGACAGAAGAACTCTCTTGAAAAGAGGTATAAGCCAAATGAAAATTTGCAGTTCCACCAAACTCAACAAGTTTGTTTAAACATTCTTTTTTTTTTTTGGTAGGAATTATGGAGACGCAGCACTCATTTCCAATCCACACGTTTCTGAAATAACAAGAGTTTCCTCCGACCAGGTTTGTTATCATAGCTGTTTTCCTTCCCTTTTTATGTCATATTTGATGTTACAATAATTATTAACAATGCTAGGAAACAATTATTCTGTGTTCTTTTAATTTATGGTTTCTCTTGTACATGAGATGTTTGGACATAGTTCCATTGTGTGCTGCAATATGGGTACAAGGAGTTCATTCCAACAGATTGCACCATTGCTTTGAAAGGCCAATGCAATGTGATAGGTTGCTAGTACAAAATTAGGAAGTTATATGATTTCTCTTTGTTTGTTATGTTATTAGGCACAAAATTCCTGAGGCACTGGAGAAGTCTAGACTCTTCTAACCATATGTGAGAGAACTAATTAGGATATATTGGGGATCTTAGTTAGAGGTGTGCACGGTTTGGTTCGGTCTGGTTTCGGGCTGAACCATGAACCAAACCAAAGTTATCGATTACAATGAAGAAGAATCGATGAAAACCGATTTTTATAGGTTTTGGTTCTTGAACTGAACCAACCTGATTCGATTCAGGTCGGTTTTTAACCGATGGTTCAGTTAAAGCAAGAACGAGAGAGTTGGTCACGTTGAAGTTTCGCTCTTCTCGCTCTCTCTCACTTCCTTTCATCACTCACAATCACTCTTATCTCTCTCACTATTGCTCTCTCACTCTCGCTCTCGCACTTACAATCACACTTATCTCTCGCGGCTGATTCGGTTCAGTTTTCTGTGGTTTTTTAGGTTATGAACCGATGATCGAATCGACTGGTTCGGTTCTGCTTTTCAGTGAACCGGTGGTTCTCCATTCTGGACCGAACCAGTCGGTTCAGTTTGGTTTGGCGGTTTTTTCCGGTTTTTACACACCCCTAATCGTAGTAGGATAAAAGAATGGGGATAGTGTTATTTAATTAGTGGTGTCGTGGTTATAAATAAGGAGAAATGGGCACCTTAGAGGGGTGAAATGGTTTTGGCATTGTCCAGTGTAGGACTTTAAAGAGAGATAGTCCTCTTGAAAGGCTATAGATATTGTAATTTCTTTTGATATTGCAATATACTCCTATCTTTTTGTTTTCTATTGTGTTCCTCTTGATTTTTCTTTTGTTTCCTTGTACTTTCCTTGCCCTTTTACTGGGTCGTTCAAATAACAAAAGTTTTCATTTGTGGGTGCTCCAAGTTTCTCATTAATGCATAGTTCAACGAGTTTCAAGACTTTTGACTTCAAATATGTCTTTTGTATCTTAGGTCAAATTTTTGTGTAAAAAGGACTTAAACAAACAGTGCCATTTATTTATCTAAGAATCACAAAACCACTTGGCATCACATTGGAAATTACCCGAAAATCAATATTTAAATCAAAATTATACTCTAGGCTACTCAAAATTCACTGTCGGAGGTATTCATCAATGTTGACTACCTCTTCAAATTATCTTTAGAGTTATTTTCAATTTCTTGAAATATCATAGACTATGCTACAAATTGTATCATATCAAGGAGGGCAGTAGGCTCCTGTGTCTGGGTAATGAAAGAAGTTGGAAGGGGTCTACCTTTGGGTAGTGATGTCTTGCATCTTAAACTTGACTCGGACTGAATAAATAAAAAAGGAAGAAGAATTTTTTGTGGGCTCTTTGGGCTTGAGGATCTTGGAAATCAACTTGGTCTTTTGGTCTTTTATCCTTGCCACCAGAATGGTTGAAGGTTTAGATGATCGATATGTATATCTAATCTTTAGGGTTTCATTAAAATATGTGTTATAATCTCACTTCAGAGAGAGAATAGAAATCAGGTTCACCTTCATATAGTAATTATGACAGAAATGAAGGAAAGAAGTCCTTGCCCCTCATTGTTGTCAGACTTCTTGATTGTTAGTCAAACTTTATTTTCTTTTGCCCCTTTATCCTGGAGTCAGGGATTTGGTGATCTCAAGTGAGAGAGGTGGAGAAAGGATCCAACTAACCTTGGAGAATTGAGTATGATGCAGTGGTGACTTTAGGTTGAACTCGGATTTGAAGATTTGTAGTTTGACTTACTCAGGCAGGTTGCCCCGTGAAATTTCTGGAGTGTACGTGAGTTGGGGACACTCACGAATATCAGAGAAAAAAAAAAAAAAGATAGTGCGACTTAATGTCCTTATAGAGCATACATGCATACATATACACATACATGAAGCAAGAGCTTCTTGGTGTGGACAATAGTGCAACTGAATTGCTACTGAGCCGGGGGTGGAAACTAGGTGTAGGGGCCTTGATTTTTTTTAGATGATGCTAGAGCTTCTTGGTGGCTAAATGGTGTGGAACGTTGTCTGAACTGAAGTGTATAGATGTTTGAGGATGTGGTTTTGCATCCAAGTGTGGAGAAAAGAAATTTTTTTTGGTGATAGGTAAACAAGCTAAAGATGGAGGTGATGGTAACAATATTTTAAGAAAGAAACTGTTGTAATCACTCCACCACACCACCTACATTCAACTCCATTCTTCGTCATTTATGGTCCTTCCTCTTTAGGAACATCCAAGGGCTCTTTATTGGAGTTCAGGAACAATCAAGAGTTTTGATACCAGATTAGTGCAATAAGTTTTATGATTAAGTCAAATTTCTCACAAGGGGAAAGCACCAAAACTCTCTCAAGTCTAAATTCTTTAATTTATAAAAATTTTCCACGATAAACCAAGTATGGGCATTTAACTTGGATAAAAGATGAGAATAACTTGTAAATCTTGAAACACTAATGGACTAATCAATAGAATTTACTAACTGGCATTAACAATTTGACTAATTATCTTAATCAAAATTAGCTAATTAGATTAGTCATAGAATATTTGTTTCCTGCACTTGCTATCTCCTTTCTTTCTTGTCGTAGTAGTTGATTGCCTATGCAGACATCTAACAAAAGGGCTTACGAATAAATATATTTCTCTCATTATGTTTCTGTGCTACGTTTTTGAAAGGTAATTTTGTTTTATCACATCAAGGATTATTGGGTTGCATTGCACTATCCACTCAAGAAATGCAAACTCACGACTTACCAAGTATTCTGGATCAACTATTCTAGGGGAGACCATACTATATGCACGTATATTTTTCTGATTAACACATTGTTCAACGAGATTTCCAGAAAAATTTAATTCATTGAATTTGAACTTTGTATTACTATCGATTTGAGTACAGTATTGTGAGTACACTCCCTTGTACATAATCCTTTGATGCTTTCTCTTGAAAAGTAAACTTTAATCCTTAGACTTGTTGATCTTCTTGGATAATCGACTTTTGGGCTTGATTTTTTGGAGGATTGACCTTCGGACTTGTTGATTTTGTTGACTGGTTTGGATCGACCTTTGGCTTGTTGATCGGCTTGAATCGACCTCTAACTTGTTTATTGACTTGGATCGGCCTATGGCTTGTTGATCGACTTGGGTTGACCTTTTGCTTGTTGATCGACTTGGGTCGGCCTTTTGCTTGTTGATCAACTTGGATCAGGCTCTTACTTGTTGATCAACTTGGATCAACCTCTAGCTTGACTTGTTGATTTGTTTGGATCGACCTTCAGTTTGTTGGTCGGCTCGAATTGACCTCTGACTTGTTGATCAACTTGGATTGGCCTCTGGTCTATTGATTGACCTCTGGCTTGTTGATTTGTTTGGATCGACCTTTGGAGTTTCTAACTTTAAGAGCTTCAATGAGTCTTCTGATCTCCTTAAAGTTTTCTAAGTTGTTGTTTTAGTCTTTAGAGCTTTTGAGAGAATTGTGTTCTTCAGATCTTCGGAGCTTTGGAGCTTCATTCTCCAGAGCTTTAGAGCTTCATTCTTCTTTTCTACCCTCCAAAATGAAGGGGCAAGTCCTCTATTCATAGAGTTTCTGTGGGCTTTACATGGGCTTGGTCTCAGTATCTTTCTTGGCCCAAAATTCCTACCATGGGCTTAAATTGGGTTGGACTTTGCCAAACGACTTTAATTACTTGGCATGATTCAATTTATAATTTTAGGCCCACTCGAACCTCTAACCAAATTTATCGATCATGGTCCAGACATGATCCAGACTTAATCATCGTTGAATTTGACGTCGTTGAATTTGACAAGTTTATTGAGATCATATGGCCAGATAGGAGACATGTGCCATTTTTAGTTTGTCATTTGTCTTCAAATAAAATGGGCTTTCGTTGTGATAATGTAGCAAAATTTCTCATTCAACGCACACTAATTGGTTGGAGTTGCAGTTTTGTTCGGTTTTTTTTTTTTTTTTTTTTTTTTTAGGTTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTCAGGTTATTTACAATTTCCCTTTTCTCCTGAAATAAAATTATAGTCTTGTTTGGAGGAGTAATCTTTTTCTGTAGGACCTCGTGGCATGACTTGGTAGATTTGCTTGATTTTCTTCCTTCGATTGTTTAGAAGTACATTCCTCCTTATGGAAGTTTTATTTCCCTTTTGTTAGCTATAGAGCCATGAAGTCTTTGGTTATCTCTAGTGAATTTTGTTTGTCCTATTGATTCTTTTGATGATGTAGATGTCTTAATGATGTTGGTTGGCCCATTATCACTAGGTCAGGTAGAGGTAGAGAAGGTTAAAGGGACTTCGATTCCTATAAACTAAATGAGTTCTTGATAATGGCTTTTGAATCTTCTTGTTTCTGGGTGAAGATACGGATAGAATGTTTGCGGACGTTCCTCCTCCACTATTGTTTATTCTTGTCGGTTTTTTTTTATTTTTTTTATTTATTTTTTTTTTTTCTGTGGCTGAAAACGTCACTTTTTTCTTGAGTACAGGATTACTTCGCATCTGAATCCATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGGTTATAAAATTTATTTTTCATATGAATTATTCTCTACATTTGAGCACATTGTAATTTAAACACTGCTTAGTACCTTGTGTTTTAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCAGCGAGCAAGAAGTCACGTATGGACAATAGGAGAAGAATCTAATGCTTGCCAACCTTTATAGAGACGGTTAATAGGTGTCTCAACGTTGTATCAAAAGCTATTTTGACACATAGCATATACGCAGATTTGCAGTGTACATATTAATTTGCTTGATGTCTTATTTCAAAGGTTAAAATGGAATAGTGCATGTACCAAAGTTCTGTAAGGAGAGTTTTATTGTCATCACCATAGCCCGTACATTTGCTATCATCATTTCTCACATGAGGATCATGATTGCCGATTTATAGTTTACATTTGCATTTATTTA

mRNA sequence

GTACAATTTTCTCAAAATCTGATTTAAATAAAAAGAAAGAAAAAAATTAAAAGAAAAAGAAAATCGCATCAGACGCAATACGATTTTTCAAGCGTCCGATGTGGAGAAAATCCAACGGTGAGTCTTAAAGTATTGAAATACGCAGTTAGTAAGGGAGCTTAGCTTAGATTTGGGAACAAGAGCCAACCCCTTTCGACCGAGAAGACGCCATCTTCATCATATTCGCCTGAGGCATTCGAGAGCCGCGTTCGAAGAAGAATTAGGATTGACATGGGGAAGCAACCGGTTCGGATGAAGGCTGTGATCTACGCTTTATCGCCGTTCCAGCAGAAGATCATGACAGGGTTATGGAACGACTTGACCGGCAAGATTCACCATAAGATCTCCGAGAACTGGATCAGTGCGGCCCTTCTGATTACCCCCGTCGTCGGCACCTATACGTACGCACAGCAGTACAAGGAGAATGAAAAGTTGTCTCACAGGAGCGTTTCAAATCTGTGGCAAATTAGAAAGGCGGAGTTAGATAATCGGAAATCGGAAATCGGATCTCGGAGAAGACGACTTGTTCGGGGATGCCTCGCTTTACAGACGAGCCCCCTGCGGTATTTGACTGTGAGGAACGTCCCAGCATTGGGTTGTGGAGATGACTTGCTCAAATTGTTCTCCTCCTACGGAAACCTTGAAGAGTGTACACCGATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTAAAATTTCATTTGGTCACCAATGCCAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTTCTTGGTAACCGGCTGCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTCTGGGAGACCAAGAGGATCTGCAGTTAGTTCAACAACCGCAAAGCTTCTAAATCCTTCTCATTCTCATTATACTCTTGGACAGAAGAACTCTCTTGAAAAGAGGAATTATGGAGACGCAGCACTCATTTCCAATCCACACGTTTCTGAAATAACAAGAGTTTCCTCCGACCAGGATTACTTCGCATCTGAATCCATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCAGCGAGCAAGAAGTCACGTATGGACAATAGGAGAAGAATCTAATGCTTGCCAACCTTTATAGAGACGGTTAATAGGTGTCTCAACGTTGTATCAAAAGCTATTTTGACACATAGCATATACGCAGATTTGCAGTGTACATATTAATTTGCTTGATGTCTTATTTCAAAGGTTAAAATGGAATAGTGCATGTACCAAAGTTCTGTAAGGAGAGTTTTATTGTCATCACCATAGCCCGTACATTTGCTATCATCATTTCTCACATGAGGATCATGATTGCCGATTTATAGTTTACATTTGCATTTATTTA

Coding sequence (CDS)

ATGGGGAAGCAACCGGTTCGGATGAAGGCTGTGATCTACGCTTTATCGCCGTTCCAGCAGAAGATCATGACAGGGTTATGGAACGACTTGACCGGCAAGATTCACCATAAGATCTCCGAGAACTGGATCAGTGCGGCCCTTCTGATTACCCCCGTCGTCGGCACCTATACGTACGCACAGCAGTACAAGGAGAATGAAAAGTTGTCTCACAGGAGCGTTTCAAATCTGTGGCAAATTAGAAAGGCGGAGTTAGATAATCGGAAATCGGAAATCGGATCTCGGAGAAGACGACTTGTTCGGGGATGCCTCGCTTTACAGACGAGCCCCCTGCGGTATTTGACTGTGAGGAACGTCCCAGCATTGGGTTGTGGAGATGACTTGCTCAAATTGTTCTCCTCCTACGGAAACCTTGAAGAGTGTACACCGATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTAAAATTTCATTTGGTCACCAATGCCAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTTCTTGGTAACCGGCTGCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTCTGGGAGACCAAGAGGATCTGCAGTTAGTTCAACAACCGCAAAGCTTCTAAATCCTTCTCATTCTCATTATACTCTTGGACAGAAGAACTCTCTTGAAAAGAGGAATTATGGAGACGCAGCACTCATTTCCAATCCACACGTTTCTGAAATAACAAGAGTTTCCTCCGACCAGGATTACTTCGCATCTGAATCCATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCAGCGAGCAAGAAGTCACGTATGGACAATAGGAGAAGAATCTAA

Protein sequence

MGKQPVRMKAVIYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQQYKENEKLSHRSVSNLWQIRKAELDNRKSEIGSRRRRLVRGCLALQTSPLRYLTVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLNPSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI

Homology

[Close]

BLAST of CcUC08G162300 vs. NCBI nr
Match: XP_004142975.1 (RNA-binding protein 48 isoform X2 [Cucumis sativus] >KGN62296.1 hypothetical protein Csa_018618 [Cucumis sativus])

HSP 1 Score: 388.7 bits (997), Expect = 5.0e-104
Identity = 210/247 (85.02%), Postives = 215/247 (87.04%), Query Frame = 0


Query: 84  LDNRKSEIGSRRRRLVRGC----------LALQTSPL----RYLTVRNVPALGCGDDLLK 143
           LDN K EIGSR      GC          LA++   +    RYL VRNVPALGCGDDL K
Sbjct: 13  LDNWKLEIGSRNWEKT-GCWGMPCFRDESLAVRAYTVCDESRYLIVRNVPALGCGDDLHK 72

Query: 144 LFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPE 203
           LFSSYGNLEEC PMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPE
Sbjct: 73  LFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPE 132

Query: 204 FESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLNPSHSHYTLGQKNSLEKRNY 263
           FESLLDTKEKLEVRRREVLARLDSGRPRG+AVSSTTAKL N S SHYTL QKNSLEKRNY
Sbjct: 133 FESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNQSRSHYTLKQKNSLEKRNY 192

Query: 264 GDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSR 317
           GDAALISNPHVS+ITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSR
Sbjct: 193 GDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSR 252

[Close]

BLAST of CcUC08G162300 vs. NCBI nr
Match: XP_011649485.1 (RNA-binding protein 48 isoform X1 [Cucumis sativus])

HSP 1 Score: 384.0 bits (985), Expect = 1.2e-102
Identity = 210/248 (84.68%), Postives = 215/248 (86.69%), Query Frame = 0


Query: 84  LDNRKSEIGSRRRRLVRGC----------LALQTSPL----RYLTVRNVPALGCGDDLLK 143
           LDN K EIGSR      GC          LA++   +    RYL VRNVPALGCGDDL K
Sbjct: 13  LDNWKLEIGSRNWEKT-GCWGMPCFRDESLAVRAYTVCDESRYLIVRNVPALGCGDDLHK 72

Query: 144 LFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPE 203
           LFSSYGNLEEC PMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPE
Sbjct: 73  LFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPE 132

Query: 204 FESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLNPSHSHYTLGQKNSLEK-RN 263
           FESLLDTKEKLEVRRREVLARLDSGRPRG+AVSSTTAKL N S SHYTL QKNSLEK RN
Sbjct: 133 FESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNQSRSHYTLKQKNSLEKSRN 192

Query: 264 YGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKS 317
           YGDAALISNPHVS+ITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKS
Sbjct: 193 YGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKS 252

[Close]

BLAST of CcUC08G162300 vs. NCBI nr
Match: XP_038884635.1 (RNA-binding protein 48 isoform X1 [Benincasa hispida])

HSP 1 Score: 381.7 bits (979), Expect = 6.1e-102
Identity = 194/206 (94.17%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 111 RYLTVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKR 170
           RYL VRNVPALGCGDDLLKLFSSYGNLEEC PMDAEECDEFTDVYFVKFHLVT+ARFAKR
Sbjct: 21  RYLVVRNVPALGCGDDLLKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTSARFAKR 80

Query: 171 KLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLN 230
           KLDEFVFLGNRLQVSYAPEFESLLDT+EKLEVRRREVLARLDSGRPRGSAVSSTTAK  N
Sbjct: 81  KLDEFVFLGNRLQVSYAPEFESLLDTEEKLEVRRREVLARLDSGRPRGSAVSSTTAKRTN 140

Query: 231 PSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKLD 290
           PS SHYTL QKNSLE RNYGD  LISNPHVS+ITRVSSDQDYFASESMNQTVHLVREKLD
Sbjct: 141 PSRSHYTLEQKNSLETRNYGDTTLISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD 200

Query: 291 KIQSSSEHLQAGPASKKSRMDNRRRI 317
           KIQSSSEHLQAGPASKKSRMDNRRRI
Sbjct: 201 KIQSSSEHLQAGPASKKSRMDNRRRI 226

[Close]

BLAST of CcUC08G162300 vs. NCBI nr
Match: XP_022997621.1 (RNA-binding protein 48 isoform X1 [Cucurbita maxima])

HSP 1 Score: 375.6 bits (963), Expect = 4.3e-100
Identity = 188/206 (91.26%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 111 RYLTVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKR 170
           RYL VRNVPALGCGD+LLKLFSSYGNLEEC PMDAEECDEFTDVYFVKFHLV+NARFAKR
Sbjct: 21  RYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVSNARFAKR 80

Query: 171 KLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLN 230
           KLDEFVFLGNRLQVSYAP+FESLLDTKEKLEVRRREVLARLDSGRPRGSAV+S T K  N
Sbjct: 81  KLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLARLDSGRPRGSAVNSATTKFTN 140

Query: 231 PSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKLD 290
           PSHSHYTL QKNSLEKRNYGDAAL SNPHVS+ITRVSSDQDYFASESMNQTVHLVREKLD
Sbjct: 141 PSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD 200

Query: 291 KIQSSSEHLQAGPASKKSRMDNRRRI 317
           KIQS SEHL+AGP SK+SR+DNRRRI
Sbjct: 201 KIQSCSEHLEAGPVSKRSRVDNRRRI 226

[Close]

BLAST of CcUC08G162300 vs. NCBI nr
Match: XP_008444339.1 (PREDICTED: RNA-binding protein 48 isoform X1 [Cucumis melo] >KAA0061081.1 RNA-binding protein 48 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 374.8 bits (961), Expect = 7.4e-100
Identity = 191/206 (92.72%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 111 RYLTVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKR 170
           RYL VRNVPALGCGD L KLFSSYGNLEEC PMDAEECDEFTDVYFVKFH VTNARFAKR
Sbjct: 21  RYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKR 80

Query: 171 KLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLN 230
           KLDEFVFLGNRLQVSYAPEFESL+DTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKL N
Sbjct: 81  KLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTN 140

Query: 231 PSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKLD 290
           PS S+YTL QKNSLE RNYGDAALIS+PHVS++TRVSSDQDYFASESMNQTVHLVREKLD
Sbjct: 141 PSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD 200

Query: 291 KIQSSSEHLQAGPASKKSRMDNRRRI 317
           KIQSSSEHLQAGPASKKSR+DNRRRI
Sbjct: 201 KIQSSSEHLQAGPASKKSRLDNRRRI 226

[Close]

BLAST of CcUC08G162300 vs. ExPASy Swiss-Prot
Match: Q9SG91 (Cytochrome b-c1 complex subunit 8-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRQ-1 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.6e-28
Identity = 57/71 (80.28%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MGKQPVRMKAVIYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPV++KAV+YALSPFQQKIMTGLW DL  KIHHK+SENWISA LL+TPVVGTY YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTYWYAQ 60

Query: 61 QYKENEKLSHR 72
           +KE EKL HR
Sbjct: 61 YFKEQEKLEHR 71

[Close]

BLAST of CcUC08G162300 vs. ExPASy Swiss-Prot
Match: Q9FLB7 (Cytochrome b-c1 complex subunit 8-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRQ-2 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-27
Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MGKQPVRMKAVIYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPV++KAV+YALSPFQQKIMTGLW DL  KIHHK+SENWIS  LL+ PVVGTY+YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYSYAQ 60

Query: 61 QYKENEKLSHR 72
           +KE EKL HR
Sbjct: 61 YFKEQEKLEHR 71

[Close]

BLAST of CcUC08G162300 vs. ExPASy Swiss-Prot
Match: P46269 (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 5.6e-26
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1  MGKQPVRMKAVIYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPV++KAV+YA+SPFQQKIM GLW DL GKIHHK+SENWISA LL+ P+VGTY+Y Q
Sbjct: 1  MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQ 60

Query: 61 QYKENEKLSHR 72
           + E EKL HR
Sbjct: 61 HFLEKEKLEHR 71

[Close]

BLAST of CcUC08G162300 vs. ExPASy Swiss-Prot
Match: A4FVJ7 (RNA-binding protein 48 OS=Danio rerio OX=7955 GN=rbm48 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-19
Identity = 64/202 (31.68%), Postives = 103/202 (50.99%), Query Frame = 0


Query: 74  SNLWQIRKAELDNRKSEIGSRRRRLVRG----CLALQTSPL--RYLTVRNVPALGCGDDL 133
           S++W  +K    + +  +   R +   G     + + T  L  RYL V+ VPA+G   +L
Sbjct: 8   SSVWDTQKVYKHHEQQNVAQTRPKYREGRRLKAVKVYTINLESRYLLVQGVPAIGVMAEL 67

Query: 134 LKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYA 193
           ++LF+ YG +EE  P+D    ++FT+VY ++F  +T+AR AKR  DE  F G +L V YA
Sbjct: 68  VQLFALYGVIEEYRPLDEYPAEQFTEVYLIQFQKLTSARAAKRHTDEKSFFGGQLHVCYA 127

Query: 194 PEFESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLNPSHSHYTLGQKNSLEKR 253
           PE+E++ +TK+KL+ RRR V              +S  A  L+   +       +S + R
Sbjct: 128 PEYETVEETKQKLQDRRRYV------------NWASQNAAKLHSQQAEVNTESSSSTDTR 187

Query: 254 NYGDAALISNPHVSEITRVSSD 270
                 +  NP  +    V+SD
Sbjct: 188 TAEAPIMQKNPEEARRENVNSD 197

[Close]

BLAST of CcUC08G162300 vs. ExPASy Swiss-Prot
Match: Q5R4U2 (RNA-binding protein 48 OS=Pongo abelii OX=9601 GN=RBM48 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.4e-18
Identity = 50/130 (38.46%), Postives = 80/130 (61.54%), Query Frame = 0


Query: 79  IRKAELDNRKSEIGSRRRRLVRGCLALQTSPLRYLTVRNVPALGCGDDLLKLFSSYGNLE 138
           +++A  D R      RR R V+       S  +YL ++ VPA+G   +L++ F+ YG +E
Sbjct: 16  VQRAVCDTRAKYREGRRPRAVKVYTINLES--QYLLIQGVPAVGVMKELVERFALYGTIE 75

Query: 139 ECTPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKE 198
           +   +D    ++FT+VY +KF  + +AR AKRK+DE  F G  L V YAPEFE++ +T++
Sbjct: 76  QYNALDEYPAEDFTEVYLIKFMNLQSARAAKRKMDEQSFFGGLLHVCYAPEFETVEETRK 135

Query: 199 KLEVRRREVL 209
           KL+VR+  V+
Sbjct: 136 KLQVRKAYVV 143

[Close]

BLAST of CcUC08G162300 vs. ExPASy TrEMBL
Match: A0A0A0LQL2 (RNA-binding protein 48 OS=Cucumis sativus OX=3659 GN=Csa_2G348830 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 2.4e-104
Identity = 210/247 (85.02%), Postives = 215/247 (87.04%), Query Frame = 0


Query: 84  LDNRKSEIGSRRRRLVRGC----------LALQTSPL----RYLTVRNVPALGCGDDLLK 143
           LDN K EIGSR      GC          LA++   +    RYL VRNVPALGCGDDL K
Sbjct: 13  LDNWKLEIGSRNWEKT-GCWGMPCFRDESLAVRAYTVCDESRYLIVRNVPALGCGDDLHK 72

Query: 144 LFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPE 203
           LFSSYGNLEEC PMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPE
Sbjct: 73  LFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPE 132

Query: 204 FESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLNPSHSHYTLGQKNSLEKRNY 263
           FESLLDTKEKLEVRRREVLARLDSGRPRG+AVSSTTAKL N S SHYTL QKNSLEKRNY
Sbjct: 133 FESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNQSRSHYTLKQKNSLEKRNY 192

Query: 264 GDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSR 317
           GDAALISNPHVS+ITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSR
Sbjct: 193 GDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSR 252

[Close]

BLAST of CcUC08G162300 vs. ExPASy TrEMBL
Match: A0A6J1K7Z4 (RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 2.1e-100
Identity = 188/206 (91.26%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 111 RYLTVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKR 170
           RYL VRNVPALGCGD+LLKLFSSYGNLEEC PMDAEECDEFTDVYFVKFHLV+NARFAKR
Sbjct: 21  RYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVSNARFAKR 80

Query: 171 KLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLN 230
           KLDEFVFLGNRLQVSYAP+FESLLDTKEKLEVRRREVLARLDSGRPRGSAV+S T K  N
Sbjct: 81  KLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLARLDSGRPRGSAVNSATTKFTN 140

Query: 231 PSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKLD 290
           PSHSHYTL QKNSLEKRNYGDAAL SNPHVS+ITRVSSDQDYFASESMNQTVHLVREKLD
Sbjct: 141 PSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD 200

Query: 291 KIQSSSEHLQAGPASKKSRMDNRRRI 317
           KIQS SEHL+AGP SK+SR+DNRRRI
Sbjct: 201 KIQSCSEHLEAGPVSKRSRVDNRRRI 226

[Close]

BLAST of CcUC08G162300 vs. ExPASy TrEMBL
Match: A0A5A7V5K4 (RNA-binding protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002210 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 3.6e-100
Identity = 191/206 (92.72%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 111 RYLTVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKR 170
           RYL VRNVPALGCGD L KLFSSYGNLEEC PMDAEECDEFTDVYFVKFH VTNARFAKR
Sbjct: 21  RYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKR 80

Query: 171 KLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLN 230
           KLDEFVFLGNRLQVSYAPEFESL+DTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKL N
Sbjct: 81  KLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTN 140

Query: 231 PSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKLD 290
           PS S+YTL QKNSLE RNYGDAALIS+PHVS++TRVSSDQDYFASESMNQTVHLVREKLD
Sbjct: 141 PSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD 200

Query: 291 KIQSSSEHLQAGPASKKSRMDNRRRI 317
           KIQSSSEHLQAGPASKKSR+DNRRRI
Sbjct: 201 KIQSSSEHLQAGPASKKSRLDNRRRI 226

[Close]

BLAST of CcUC08G162300 vs. ExPASy TrEMBL
Match: A0A1S3BA34 (RNA-binding protein 48 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 3.6e-100
Identity = 191/206 (92.72%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 111 RYLTVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKR 170
           RYL VRNVPALGCGD L KLFSSYGNLEEC PMDAEECDEFTDVYFVKFH VTNARFAKR
Sbjct: 21  RYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKR 80

Query: 171 KLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLN 230
           KLDEFVFLGNRLQVSYAPEFESL+DTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKL N
Sbjct: 81  KLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTN 140

Query: 231 PSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKLD 290
           PS S+YTL QKNSLE RNYGDAALIS+PHVS++TRVSSDQDYFASESMNQTVHLVREKLD
Sbjct: 141 PSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLD 200

Query: 291 KIQSSSEHLQAGPASKKSRMDNRRRI 317
           KIQSSSEHLQAGPASKKSR+DNRRRI
Sbjct: 201 KIQSSSEHLQAGPASKKSRLDNRRRI 226

[Close]

BLAST of CcUC08G162300 vs. ExPASy TrEMBL
Match: A0A6J1HAQ6 (RNA-binding protein 48 OS=Cucurbita moschata OX=3662 GN=LOC111462353 PE=3 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 3.0e-99
Identity = 186/206 (90.29%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 111 RYLTVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKR 170
           RYL VRNVPALGCGD+LLKLFSSYGNLEEC PMDAEECDEFTDVYFVKFHLV+NARFAKR
Sbjct: 21  RYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVSNARFAKR 80

Query: 171 KLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLN 230
           KLDEFVFLGNRLQVSYAP+FESLLDTKEKLEVRRREVLARL+SGRPRGSAV+S T K  N
Sbjct: 81  KLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLARLNSGRPRGSAVNSATTKFTN 140

Query: 231 PSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKLD 290
           PSHSHYTL QK+SLEKRNYGDAAL SNPHVS+ITRVSSDQDYFASESMNQTVHLVREKLD
Sbjct: 141 PSHSHYTLEQKSSLEKRNYGDAALSSNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD 200

Query: 291 KIQSSSEHLQAGPASKKSRMDNRRRI 317
           KIQS SEHL+AGP SK+SR+DNRRRI
Sbjct: 201 KIQSCSEHLEAGPVSKRSRVDNRRRI 226

[Close]

BLAST of CcUC08G162300 vs. TAIR 10
Match: AT2G27790.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 211.5 bits (537), Expect = 1.0e-54
Identity = 119/231 (51.52%), Postives = 152/231 (65.80%), Query Frame = 0


Query: 111 RYLTVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKR 170
           RY+ VRNVPALGCGDDL++LF +YG +EEC PMDAE+C EFTDVY++KF L+TNARFAKR
Sbjct: 21  RYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITNARFAKR 80

Query: 171 KLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLN 230
           KLDE  FLGNRLQ+SYAPE+E++ DTK+KLE RR+EVLARL+   P+    +S   KL  
Sbjct: 81  KLDESSFLGNRLQISYAPEYENVNDTKDKLESRRKEVLARLN---PQKEKSTSQVTKLAG 140

Query: 231 P--SHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREK 290
           P  + +     Q+  +E + +   A         +TRVSSDQ+YFAS SMNQTV  VREK
Sbjct: 141 PALTQTDNVSSQRREMEYQFHRGNA--------PVTRVSSDQEYFASSSMNQTVKTVREK 200

Query: 291 LDKIQSSSEHLQAGPAS-----------------------KKSRMDNRRRI 317
           L+KI+ S    +  P+S                       K++R+DNRRRI
Sbjct: 201 LNKIEESGNQKRLQPSSQTQPEESGNQKRLQPSSQIQPDLKRTRVDNRRRI 240

[Close]

BLAST of CcUC08G162300 vs. TAIR 10
Match: AT2G27790.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 211.5 bits (537), Expect = 1.0e-54
Identity = 119/231 (51.52%), Postives = 152/231 (65.80%), Query Frame = 0


Query: 111 RYLTVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKR 170
           RY+ VRNVPALGCGDDL++LF +YG +EEC PMDAE+C EFTDVY++KF L+TNARFAKR
Sbjct: 21  RYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITNARFAKR 80

Query: 171 KLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLN 230
           KLDE  FLGNRLQ+SYAPE+E++ DTK+KLE RR+EVLARL+   P+    +S   KL  
Sbjct: 81  KLDESSFLGNRLQISYAPEYENVNDTKDKLESRRKEVLARLN---PQKEKSTSQVTKLAG 140

Query: 231 P--SHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREK 290
           P  + +     Q+  +E + +   A         +TRVSSDQ+YFAS SMNQTV  VREK
Sbjct: 141 PALTQTDNVSSQRREMEYQFHRGNA--------PVTRVSSDQEYFASSSMNQTVKTVREK 200

Query: 291 LDKIQSSSEHLQAGPAS-----------------------KKSRMDNRRRI 317
           L+KI+ S    +  P+S                       K++R+DNRRRI
Sbjct: 201 LNKIEESGNQKRLQPSSQTQPEESGNQKRLQPSSQIQPDLKRTRVDNRRRI 240

[Close]

BLAST of CcUC08G162300 vs. TAIR 10
Match: AT5G27300.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 200.7 bits (509), Expect = 1.8e-51
Identity = 115/212 (54.25%), Postives = 146/212 (68.87%), Query Frame = 0


Query: 111 RYLTVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKR 170
           RY+ VRNVPALGCGDDL++LF +YG +EEC PMDAE+C EFTDVY++KF L+TNA    R
Sbjct: 377 RYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITNA----R 436

Query: 171 KLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLN 230
           KLDE  FLGNRLQ+SYAPE+ES+ DTKEKLE RR+EVLARL+   P  +  +S   KL  
Sbjct: 437 KLDESSFLGNRLQISYAPEYESVSDTKEKLETRRKEVLARLN---PHKAKSTSQVTKLAG 496

Query: 231 PSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKLD 290
           P+     L Q ++   R   +     +   + +TRVSS Q+YFAS SMNQ V  VREKL+
Sbjct: 497 PA-----LTQTDNFSPRR-REMDYQFHRGNAPVTRVSSYQEYFASSSMNQMVKTVREKLN 556

Query: 291 KIQSSSEHLQAGPAS------KKSRMDNRRRI 317
           KI+ S    +  P+S      K++R+DNRRRI
Sbjct: 557 KIEESGNQKRLQPSSQTQPDFKRTRVDNRRRI 575

[Close]

BLAST of CcUC08G162300 vs. TAIR 10
Match: AT5G27300.2 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 200.7 bits (509), Expect = 1.8e-51
Identity = 115/212 (54.25%), Postives = 146/212 (68.87%), Query Frame = 0


Query: 111 RYLTVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKR 170
           RY+ VRNVPALGCGDDL++LF +YG +EEC PMDAE+C EFTDVY++KF L+TNA    R
Sbjct: 352 RYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITNA----R 411

Query: 171 KLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLLN 230
           KLDE  FLGNRLQ+SYAPE+ES+ DTKEKLE RR+EVLARL+   P  +  +S   KL  
Sbjct: 412 KLDESSFLGNRLQISYAPEYESVSDTKEKLETRRKEVLARLN---PHKAKSTSQVTKLAG 471

Query: 231 PSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKLD 290
           P+     L Q ++   R   +     +   + +TRVSS Q+YFAS SMNQ V  VREKL+
Sbjct: 472 PA-----LTQTDNFSPRR-REMDYQFHRGNAPVTRVSSYQEYFASSSMNQMVKTVREKLN 531

Query: 291 KIQSSSEHLQAGPAS------KKSRMDNRRRI 317
           KI+ S    +  P+S      K++R+DNRRRI
Sbjct: 532 KIEESGNQKRLQPSSQTQPDFKRTRVDNRRRI 550

[Close]

BLAST of CcUC08G162300 vs. TAIR 10
Match: AT3G10860.1 (Cytochrome b-c1 complex, subunit 8 protein )

HSP 1 Score: 126.7 bits (317), Expect = 3.3e-29
Identity = 57/71 (80.28%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MGKQPVRMKAVIYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPV++KAV+YALSPFQQKIMTGLW DL  KIHHK+SENWISA LL+TPVVGTY YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTYWYAQ 60

Query: 61 QYKENEKLSHR 72
           +KE EKL HR
Sbjct: 61 YFKEQEKLEHR 71

The following BLAST results are available for this feature:

BLAST of CcUC08G162300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142975.1	5.0e-104	85.02	RNA-binding protein 48 isoform X2 [Cucumis sativus] >KGN62296.1 hypothetical pro...	[more]
XP_011649485.1	1.2e-102	84.68	RNA-binding protein 48 isoform X1 [Cucumis sativus]	[more]
XP_038884635.1	6.1e-102	94.17	RNA-binding protein 48 isoform X1 [Benincasa hispida]	[more]
XP_022997621.1	4.3e-100	91.26	RNA-binding protein 48 isoform X1 [Cucurbita maxima]	[more]
XP_008444339.1	7.4e-100	92.72	PREDICTED: RNA-binding protein 48 isoform X1 [Cucumis melo] >KAA0061081.1 RNA-bi...	[more]

BLAST of CcUC08G162300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SG91	4.6e-28	80.28	Cytochrome b-c1 complex subunit 8-1, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
Q9FLB7	3.0e-27	77.46	Cytochrome b-c1 complex subunit 8-2, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
P46269	5.6e-26	73.24	Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum OX=4113 PE=1 SV=2	[more]
A4FVJ7	1.0e-19	31.68	RNA-binding protein 48 OS=Danio rerio OX=7955 GN=rbm48 PE=2 SV=1	[more]
Q5R4U2	7.4e-18	38.46	RNA-binding protein 48 OS=Pongo abelii OX=9601 GN=RBM48 PE=2 SV=1	[more]

BLAST of CcUC08G162300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQL2	2.4e-104	85.02	RNA-binding protein 48 OS=Cucumis sativus OX=3659 GN=Csa_2G348830 PE=3 SV=1	[more]
A0A6J1K7Z4	2.1e-100	91.26	RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1	[more]
A0A5A7V5K4	3.6e-100	92.72	RNA-binding protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5...	[more]
A0A1S3BA34	3.6e-100	92.72	RNA-binding protein 48 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=3 SV=1	[more]
A0A6J1HAQ6	3.0e-99	90.29	RNA-binding protein 48 OS=Cucurbita moschata OX=3662 GN=LOC111462353 PE=3 SV=1	[more]

BLAST of CcUC08G162300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27790.1	1.0e-54	51.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G27790.2	1.0e-54	51.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G27300.1	1.8e-51	54.25	pentatricopeptide (PPR) repeat-containing protein	[more]
AT5G27300.2	1.8e-51	54.25	pentatricopeptide (PPR) repeat-containing protein	[more]
AT3G10860.1	3.3e-29	80.28	Cytochrome b-c1 complex, subunit 8 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 105..203 e-value: 1.6E-7 score: 33.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 113..182 e-value: 5.0E-5 score: 23.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 111..189 score: 9.234532
IPR036642	Cytochrome b-c1 complex subunit 8 superfamily	GENE3D	1.20.5.210		coord: 2..72 e-value: 2.9E-8 score: 35.7
IPR036642	Cytochrome b-c1 complex subunit 8 superfamily	SUPERFAMILY	81508	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 10..66
IPR020101	Cytochrome b-c1 complex subunit 8, plants	PFAM	PF10890	Cyt_b-c1_8	coord: 1..71 e-value: 1.3E-34 score: 118.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 293..316
IPR039599	RNA-binding protein 48	PANTHER	PTHR20957	UNCHARACTERIZED	coord: 94..316
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 107..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G162300.1	CcUC08G162300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component	GO:0005750	mitochondrial respiratory chain complex III
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0070469	respirasome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding