CcUC07G138240 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC07G138240
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	VQ domain-containing protein
Location	CicolChr07: 23920138 .. 23920380 (+)
RNA-Seq Expression	CcUC07G138240
Synteny	CcUC07G138240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAACTCATTCAACTAGGGTTGTGATTATTGACACCAAGTATGTACAAACGGATGCCAAGAGCTTCAAAACGGTGGTGCAAAAGCTGACGGGGAAAGATCCGGTAGCCGCAGTGGGGGAGGAGAACCGACATACCTGCAGCGCCCGGAACTCGGGTCTTTTGAGAGAATCATCGTTCAAGGAGTTCCAGAGAGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

mRNA sequence

ATGGAAGCAACTCATTCAACTAGGGTTGTGATTATTGACACCAAGTATGTACAAACGGATGCCAAGAGCTTCAAAACGGTGGTGCAAAAGCTGACGGGGAAAGATCCGGTAGCCGCAGTGGGGGAGGAGAACCGACATACCTGCAGCGCCCGGAACTCGGGTCTTTTGAGAGAATCATCGTTCAAGGAGTTCCAGAGAGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

Coding sequence (CDS)

ATGGAAGCAACTCATTCAACTAGGGTTGTGATTATTGACACCAAGTATGTACAAACGGATGCCAAGAGCTTCAAAACGGTGGTGCAAAAGCTGACGGGGAAAGATCCGGTAGCCGCAGTGGGGGAGGAGAACCGACATACCTGCAGCGCCCGGAACTCGGGTCTTTTGAGAGAATCATCGTTCAAGGAGTTCCAGAGAGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

Protein sequence

MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAAVGEENRHTCSARNSGLLRESSFKEFQRVLREMPRIDELYSD

Homology

[Close]

BLAST of CcUC07G138240 vs. NCBI nr
Match: KAA0063001.1 (VQ motif-containing protein 1-like [Cucumis melo var. makuwa] >TYK16346.1 VQ motif-containing protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 3.3e-28
Identity = 73/81 (90.12%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAAVGEE-NRHTCSARNSGLLRES 60
          MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD V AVGEE  R T SARNS LLR+S
Sbjct: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of CcUC07G138240 vs. NCBI nr
Match: XP_038889427.1 (VQ motif-containing protein 1-like [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 71/80 (88.75%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAAVGEENRHTCSARNSGLLRESS 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD VA   EENRHT   RNSGLLR+SS
Sbjct: 1  MEAAHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVAE--EENRHTGGTRNSGLLRDSS 60

Query: 61 FKEFQRVLREMPRIDELYSD 81
          FKEFQRVLREMPRIDELYSD
Sbjct: 61 FKEFQRVLREMPRIDELYSD 78

[Close]

BLAST of CcUC07G138240 vs. NCBI nr
Match: KGN53544.1 (hypothetical protein Csa_014778 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 2.3e-26
Identity = 70/81 (86.42%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAAVGEE-NRHTCSARNSGLLRES 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD V  V EE  R T SARNS LLR+S
Sbjct: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of CcUC07G138240 vs. NCBI nr
Match: KAG6577059.1 (VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015070.1 VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 3  ATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAAVGEENRHTCSARNSGLLRESSFK 62
          A +STRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVA   EENRH   ARNS LLR+SSFK
Sbjct: 2  AAYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVA---EENRHGDGARNSSLLRDSSFK 61

Query: 63 EFQRVLREMPRID 76
          EFQRVLREMPRID
Sbjct: 62 EFQRVLREMPRID 71

[Close]

BLAST of CcUC07G138240 vs. NCBI nr
Match: KAG6600481.1 (VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 7.1e-15
Identity = 52/71 (73.24%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 5  HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAAVGEENRHTCSARNSGL-LRESSFKE 64
          HSTRVVIIDTKYV TDAKSFKTVVQKLTGKDP A   EENR T    +SGL + +SSFK+
Sbjct: 7  HSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAA---EENRQTGGGWSSGLVITDSSFKK 66

Query: 65 FQRVLREMPRI 75
          FQ  LREMP I
Sbjct: 67 FQTELREMPTI 74

[Close]

BLAST of CcUC07G138240 vs. ExPASy Swiss-Prot
Match: Q8VYI5 (VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-07
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAA--------------------VGEENRHT 67
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+ + A                    +GE+ R  
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 68  CSARNSGLLRESSFKEFQRVLREMPRIDELY 79
                 G  R  +  EF R+ +EMP ++ELY
Sbjct: 73  HGGGGGG-GRMGTTTEFDRLFKEMPHMEELY 102

[Close]

BLAST of CcUC07G138240 vs. ExPASy Swiss-Prot
Match: Q1G3U8 (VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.3e-07
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAAVGE-------ENRHTCSARNSGLLRES- 67
          +VV I+T+YVQTDA+SFKT+VQ+LTGK+ V A G              S R  G+ +E+ 
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRFCGVGKEAE 70

Query: 68 ---SFKEFQRVLREMPRIDELYS 80
                EF    REMP + ELY+
Sbjct: 71 RGVETTEFDSFFREMPPVGELYN 93

[Close]

BLAST of CcUC07G138240 vs. ExPASy TrEMBL
Match: A0A5A7VBD1 (VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001280 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.6e-28
Identity = 73/81 (90.12%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAAVGEE-NRHTCSARNSGLLRES 60
          MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD V AVGEE  R T SARNS LLR+S
Sbjct: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of CcUC07G138240 vs. ExPASy TrEMBL
Match: A0A0A0KXJ0 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 70/81 (86.42%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAAVGEE-NRHTCSARNSGLLRES 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD V  V EE  R T SARNS LLR+S
Sbjct: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of CcUC07G138240 vs. ExPASy TrEMBL
Match: A0A6J1FVF7 (VQ motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447218 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.8e-15
Identity = 51/71 (71.83%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 5  HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAAVGEENRHTCSARNSGL-LRESSFKE 64
          HSTRVVIIDTKYV TDAKSFKTVVQKLTGKDP     EENR T    +SGL + +SSFK+
Sbjct: 7  HSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAV---EENRQTSGGWSSGLVITDSSFKK 66

Query: 65 FQRVLREMPRI 75
          FQ  LREMP I
Sbjct: 67 FQTELREMPTI 74

[Close]

BLAST of CcUC07G138240 vs. ExPASy TrEMBL
Match: A0A6J1CNV7 (VQ motif-containing protein 10-like OS=Momordica charantia OX=3673 GN=LOC111012826 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.6e-15
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 6  STRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAAVGEENRH-TCSARNSGLLRESSFKEF 65
          STRVVIIDTKYV TDAKSFKTVVQKLTGKDP AA  E+ R     + +S L R+SSFKEF
Sbjct: 8  STRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAAAEEDRRSGGGGSGSSSLTRDSSFKEF 67

Query: 66 QRVLREMPR 74
          QRVLREM +
Sbjct: 68 QRVLREMAK 76

[Close]

BLAST of CcUC07G138240 vs. ExPASy TrEMBL
Match: A0A3Q0EY25 (VQ motif-containing protein 1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106760578 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.3e-10
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGK--DPVAAVGEENRH-TCSARNSGLLRESSFKEF 67
          +VVII+T+YVQTDA SFK+VVQKLTGK  D   A  + NRH     + S L+R+ SFKEF
Sbjct: 12 KVVIINTQYVQTDATSFKSVVQKLTGKDSDTYGAKVDRNRHDKGGTKRSFLMRDVSFKEF 71

Query: 68 QRVLREMPRIDEL 78
           R+LREMP I++L
Sbjct: 72 DRLLREMPPINDL 84

[Close]

BLAST of CcUC07G138240 vs. TAIR 10
Match: AT1G78410.1 (VQ motif-containing protein )

HSP 1 Score: 57.0 bits (136), Expect = 8.1e-09
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAA--------------------VGEENRHT 67
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+ + A                    +GE+ R  
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 68  CSARNSGLLRESSFKEFQRVLREMPRIDELY 79
                 G  R  +  EF R+ +EMP ++ELY
Sbjct: 73  HGGGGGG-GRMGTTTEFDRLFKEMPHMEELY 102

[Close]

BLAST of CcUC07G138240 vs. TAIR 10
Match: AT1G17147.1 (VQ motif-containing protein )

HSP 1 Score: 55.5 bits (132), Expect = 2.3e-08
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAAVGE-------ENRHTCSARNSGLLRES- 67
          +VV I+T+YVQTDA+SFKT+VQ+LTGK+ V A G              S R  G+ +E+ 
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRFCGVGKEAE 70

Query: 68 ---SFKEFQRVLREMPRIDELYS 80
                EF    REMP + ELY+
Sbjct: 71 RGVETTEFDSFFREMPPVGELYN 93

The following BLAST results are available for this feature:

BLAST of CcUC07G138240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063001.1	3.3e-28	90.12	VQ motif-containing protein 1-like [Cucumis melo var. makuwa] >TYK16346.1 VQ mot...	[more]
XP_038889427.1	1.2e-27	88.75	VQ motif-containing protein 1-like [Benincasa hispida]	[more]
KGN53544.1	2.3e-26	86.42	hypothetical protein Csa_014778 [Cucumis sativus]	[more]
KAG6577059.1	1.2e-22	86.30	VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >...	[more]
KAG6600481.1	7.1e-15	73.24	VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CcUC07G138240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYI5	1.1e-07	38.46	VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1	[more]
Q1G3U8	3.3e-07	43.37	VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1	[more]

BLAST of CcUC07G138240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VBD1	1.6e-28	90.12	VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0KXJ0	1.1e-26	86.42	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=...	[more]
A0A6J1FVF7	5.8e-15	71.83	VQ motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447218 PE=4...	[more]
A0A6J1CNV7	7.6e-15	72.46	VQ motif-containing protein 10-like OS=Momordica charantia OX=3673 GN=LOC1110128...	[more]
A0A3Q0EY25	3.3e-10	58.90	VQ motif-containing protein 1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106760...	[more]

BLAST of CcUC07G138240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78410.1	8.1e-09	38.46	VQ motif-containing protein	[more]
AT1G17147.1	2.3e-08	43.37	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 11..36 e-value: 5.7E-11 score: 41.7
None	No IPR available	PANTHER	PTHR34777:SF1	VQ MOTIF-CONTAINING PROTEIN 10	coord: 4..79
IPR039608	VQ motif-containing protein 1/10	PANTHER	PTHR34777	VQ MOTIF-CONTAINING PROTEIN 10	coord: 4..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC07G138240.1	CcUC07G138240.1	mRNA