CcUC07G132410 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC07G132410
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr07: 4308322 .. 4308981 (-)
RNA-Seq Expression	CcUC07G132410
Synteny	CcUC07G132410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCGGTCCATGTCTTCTTCCCCTGAATTGCAACATAAATCAATTAATTCGCTCAACAGCAAACAAATTGGGGAAAATTGGAAAATAGATCGTTGATCAATTACCTTTAATCGGAAGCTGACCATCTTCAATGAGTTTGGGAACAAATGAATAAGCCCAGAAAGAACAAGCACTGATAGTCCTAAAACTGAAAATAGGGATTTTAGGTTCAGCGTCAACATCGACGATGAAATTGAAAAGCCCATCAAGAATTATGCAAGTGGGAGTCGGACCCAATTGACCCGAGATGAGCATCTGCTTGAGAAGTGGCTTGGTGACGGATTTCAAACTGTGGATCAAGTCGGAGAACTTGCCGATGGGGCGGTTTTCGGGCGGAAGGCCGTCGGTGATGGTTTGGAATTGGAAATTGGGAAAGCGAGAGAAACGAGATTGGATGTCAGCGTGGAGAGTGAGTTTGTGGTGAATTCGATGGATGTTGAGGAAGGTGATACGGAGTCGGGAGAGGGAAAGAAGCTCCGCGAGTTTGAGCATGGAGTTGACATGGCCCTGAGCTGGGAAGGGGAAGATCAGAACATGAGGCTCTGTTCCTTCTTGCTCCATTGTTTTTCTACAGTATATTGCGCCCTGTTTCTTTATCAAGCCAATTTAAGTTCATAA

mRNA sequence

ATGATTCGGTTCAGCGTCAACATCGACGATGAAATTGAAAAGCCCATCAAGAATTATGCAAGTGGGAGTCGGACCCAATTGACCCGAGATGAGCATCTGCTTGAGAAGTGGCTTGGTGACGGATTTCAAACTGTGGATCAAGTCGGAGAACTTGCCGATGGGGCGGTTTTCGGGCGGAAGGCCGTCGGTGATGGTTTGGAATTGGAAATTGGGAAAGCGAGAGAAACGAGATTGGATGTCAGCGTGGAGAGTGAGTTTGTGGTGAATTCGATGGATGTTGAGGAAGGTGATACGGAGTCGGGAGAGGGAAAGAAGCTCCGCGAGTTTGAGCATGGAGTTGACATGGCCCTGAGCTGGGAAGGGGAAGATCAGAACATGAGGCTCTGTTCCTTCTTGCTCCATTGTTTTTCTACAGTATATTGCGCCCTGTTTCTTTATCAAGCCAATTTAAGTTCATAA

Coding sequence (CDS)

ATGATTCGGTTCAGCGTCAACATCGACGATGAAATTGAAAAGCCCATCAAGAATTATGCAAGTGGGAGTCGGACCCAATTGACCCGAGATGAGCATCTGCTTGAGAAGTGGCTTGGTGACGGATTTCAAACTGTGGATCAAGTCGGAGAACTTGCCGATGGGGCGGTTTTCGGGCGGAAGGCCGTCGGTGATGGTTTGGAATTGGAAATTGGGAAAGCGAGAGAAACGAGATTGGATGTCAGCGTGGAGAGTGAGTTTGTGGTGAATTCGATGGATGTTGAGGAAGGTGATACGGAGTCGGGAGAGGGAAAGAAGCTCCGCGAGTTTGAGCATGGAGTTGACATGGCCCTGAGCTGGGAAGGGGAAGATCAGAACATGAGGCTCTGTTCCTTCTTGCTCCATTGTTTTTCTACAGTATATTGCGCCCTGTTTCTTTATCAAGCCAATTTAAGTTCATAA

Protein sequence

MIRFSVNIDDEIEKPIKNYASGSRTQLTRDEHLLEKWLGDGFQTVDQVGELADGAVFGRKAVGDGLELEIGKARETRLDVSVESEFVVNSMDVEEGDTESGEGKKLREFEHGVDMALSWEGEDQNMRLCSFLLHCFSTVYCALFLYQANLSS

Homology

[Close]

BLAST of CcUC07G132410 vs. NCBI nr
Match: KAG6600964.1 (hypothetical protein SDJN03_06197, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.8 bits (312), Expect = 6.4e-25
Identity = 68/118 (57.63%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 20  ASGSRTQLTRD--EHLLEKWLGDGFQTVDQVGELADGA-VFGRKAVGDGLELEIGKARET 79
           ++G + +  R+  +HL EK LG GF  V Q  EL   A V   KAVGDGLE E GKARET
Sbjct: 172 SAGLQIEANRELGQHLSEKGLGYGFHAVSQFRELGQAAGVVRGKAVGDGLESEFGKARET 231

Query: 80  RLDVSVESEFVVNSMDVEEGDTESGEGKKLREFEHGVDMALSWEGEDQNMRLCSFLLH 135
           RL+V V++E +V+++DVEEGD+E+GEGKKL EFEH VDM   W+G+ QNM LC FLLH
Sbjct: 232 RLEVCVKNEGLVDTVDVEEGDSEAGEGKKLGEFEHWVDMPQGWKGKHQNMGLCFFLLH 289

[Close]

BLAST of CcUC07G132410 vs. NCBI nr
Match: PON87601.1 (hypothetical protein TorRG33x02_165940 [Trema orientale])

HSP 1 Score: 82.0 bits (201), Expect = 4.8e-12
Identity = 51/141 (36.17%), Postives = 80/141 (56.74%), Query Frame = 0


Query: 4   FSVNIDDEIEKPIKNYASGSRTQLTRDEHLLEKWLGDGFQTVDQVGELADGA-VFGRKAV 63
           +S    D +     N  + + T+ TR++HL + WL    Q ++ + +   G+ V   KAV
Sbjct: 13  YSKPTKDPVRYDESNPRTVTSTKFTRNQHLSQNWLCLLIQGINDIHKPVTGSRVVLLKAV 72

Query: 64  GDGLELEIGKARETRLDVSVESEFVVNSMDVEEGDTESGEGKKLREFEHGVDMALSWEGE 123
            DG E +    RE   D+ V  + +V+ + VE+GD E+ +GKKL E EHGVDM+LS +G+
Sbjct: 73  RDGPEKKTRVFREPGFDIGVPDKTIVDVIGVEKGDVEACQGKKLGELEHGVDMSLSCQGK 132

Query: 124 DQNMRLCSFLLHCFSTVYCAL 144
           D+N R+ S+L      +YC L
Sbjct: 133 DENSRM-SYLWSSMFHLYCFL 152

[Close]

BLAST of CcUC07G132410 vs. NCBI nr
Match: PON56502.1 (hypothetical protein PanWU01x14_180700, partial [Parasponia andersonii])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-10
Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 4   FSVNIDDEIEKPIKNYASGSRTQLTRDEHLLEKWLGDGFQTVDQVGELADGA-VFGRKAV 63
           +S    D I     N  + +RT+ TR++HL +  L    Q ++ + +   G+ V   KAV
Sbjct: 35  YSKPTKDPIRYDESNTRTVTRTKFTRNQHLSQNRLRLLIQGINDIHKQVTGSRVVLLKAV 94

Query: 64  GDGLELEIGKARETRLDVSVESEFVVNSMDVEEGDTESGEGKKLREFEHGVDMALSWEGE 123
            DG E +    RE   D+ V  + +V+ + VE+GD E+ +GKKL E EHGVDM+LS +G+
Sbjct: 95  RDGPEKKTRVFREPGFDIGVPDKTIVDVICVEKGDVEACQGKKLGELEHGVDMSLSCQGK 154

Query: 124 DQNMRLCSFL------LHCF 137
           D+N    S+L      L CF
Sbjct: 155 DENSSWMSYLWSSVFHLECF 174

[Close]

BLAST of CcUC07G132410 vs. NCBI nr
Match: KAA0051524.1 (hypothetical protein E6C27_scaffold174G00480 [Cucumis melo var. makuwa] >TYK24142.1 hypothetical protein E5676_scaffold610G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-07
Identity = 44/90 (48.89%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 53  DGAVFG-RKAVGDGLELEIGKARETRLDVSVESEFVVNSMDVEEGDTESGEGKKLREFEH 112
           +GA  G RKA+GDG ELE GK  E   DV VE E  V     EE DT  GEGK+L E EH
Sbjct: 18  EGARVGYRKAIGDGSELEGGKKGEAVEDVGVEGELAVGVFGSEECDTNGGEGKELGELEH 77

Query: 113 GVDMALSWEGEDQNM-RLCSFLLHCFSTVY 141
            VD+ L   G+++NM R   + LH   TV+
Sbjct: 78  DVDVTLGRGGKEKNMGRGYLWFLHGRVTVF 107

[Close]

BLAST of CcUC07G132410 vs. NCBI nr
Match: CAN68539.1 (hypothetical protein VITISV_039647 [Vitis vinifera])

HSP 1 Score: 65.1 bits (157), Expect = 6.0e-07
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 59  RKAVGDGLELEIGKARETRLDVSVESEFVVNSMDVEEGDTESGEGKKLREFEHGVDMALS 118
           R+ +G  LE +   ARE+  +V V  E  V  + VEEGD E+GEGKK  EFEHG+DMAL+
Sbjct: 4   RQPIGYRLETKASIARESVQNVGVTEEAAVGVVGVEEGDAEAGEGKKFGEFEHGIDMALN 63

Query: 119 WEGEDQNM 127
            + ED++M
Sbjct: 64  GKREDKDM 71

[Close]

BLAST of CcUC07G132410 vs. ExPASy TrEMBL
Match: A0A2P5EPW6 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_165940 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 51/141 (36.17%), Postives = 80/141 (56.74%), Query Frame = 0


Query: 4   FSVNIDDEIEKPIKNYASGSRTQLTRDEHLLEKWLGDGFQTVDQVGELADGA-VFGRKAV 63
           +S    D +     N  + + T+ TR++HL + WL    Q ++ + +   G+ V   KAV
Sbjct: 13  YSKPTKDPVRYDESNPRTVTSTKFTRNQHLSQNWLCLLIQGINDIHKPVTGSRVVLLKAV 72

Query: 64  GDGLELEIGKARETRLDVSVESEFVVNSMDVEEGDTESGEGKKLREFEHGVDMALSWEGE 123
            DG E +    RE   D+ V  + +V+ + VE+GD E+ +GKKL E EHGVDM+LS +G+
Sbjct: 73  RDGPEKKTRVFREPGFDIGVPDKTIVDVIGVEKGDVEACQGKKLGELEHGVDMSLSCQGK 132

Query: 124 DQNMRLCSFLLHCFSTVYCAL 144
           D+N R+ S+L      +YC L
Sbjct: 133 DENSRM-SYLWSSMFHLYCFL 152

[Close]

BLAST of CcUC07G132410 vs. ExPASy TrEMBL
Match: A0A2P5C604 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_180700 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.7e-11
Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 4   FSVNIDDEIEKPIKNYASGSRTQLTRDEHLLEKWLGDGFQTVDQVGELADGA-VFGRKAV 63
           +S    D I     N  + +RT+ TR++HL +  L    Q ++ + +   G+ V   KAV
Sbjct: 35  YSKPTKDPIRYDESNTRTVTRTKFTRNQHLSQNRLRLLIQGINDIHKQVTGSRVVLLKAV 94

Query: 64  GDGLELEIGKARETRLDVSVESEFVVNSMDVEEGDTESGEGKKLREFEHGVDMALSWEGE 123
            DG E +    RE   D+ V  + +V+ + VE+GD E+ +GKKL E EHGVDM+LS +G+
Sbjct: 95  RDGPEKKTRVFREPGFDIGVPDKTIVDVICVEKGDVEACQGKKLGELEHGVDMSLSCQGK 154

Query: 124 DQNMRLCSFL------LHCF 137
           D+N    S+L      L CF
Sbjct: 155 DENSSWMSYLWSSVFHLECF 174

[Close]

BLAST of CcUC07G132410 vs. ExPASy TrEMBL
Match: A0A5A7U886 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold610G00450 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 44/90 (48.89%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 53  DGAVFG-RKAVGDGLELEIGKARETRLDVSVESEFVVNSMDVEEGDTESGEGKKLREFEH 112
           +GA  G RKA+GDG ELE GK  E   DV VE E  V     EE DT  GEGK+L E EH
Sbjct: 18  EGARVGYRKAIGDGSELEGGKKGEAVEDVGVEGELAVGVFGSEECDTNGGEGKELGELEH 77

Query: 113 GVDMALSWEGEDQNM-RLCSFLLHCFSTVY 141
            VD+ L   G+++NM R   + LH   TV+
Sbjct: 78  DVDVTLGRGGKEKNMGRGYLWFLHGRVTVF 107

[Close]

BLAST of CcUC07G132410 vs. ExPASy TrEMBL
Match: A5C1L2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_039647 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.9e-07
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 59  RKAVGDGLELEIGKARETRLDVSVESEFVVNSMDVEEGDTESGEGKKLREFEHGVDMALS 118
           R+ +G  LE +   ARE+  +V V  E  V  + VEEGD E+GEGKK  EFEHG+DMAL+
Sbjct: 4   RQPIGYRLETKASIARESVQNVGVTEEAAVGVVGVEEGDAEAGEGKKFGEFEHGIDMALN 63

Query: 119 WEGEDQNM 127
            + ED++M
Sbjct: 64  GKREDKDM 71

The following BLAST results are available for this feature:

BLAST of CcUC07G132410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600964.1	6.4e-25	57.63	hypothetical protein SDJN03_06197, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PON87601.1	4.8e-12	36.17	hypothetical protein TorRG33x02_165940 [Trema orientale]	[more]
PON56502.1	2.0e-10	36.43	hypothetical protein PanWU01x14_180700, partial [Parasponia andersonii]	[more]
KAA0051524.1	2.7e-07	48.89	hypothetical protein E6C27_scaffold174G00480 [Cucumis melo var. makuwa] >TYK2414...	[more]
CAN68539.1	6.0e-07	50.00	hypothetical protein VITISV_039647 [Vitis vinifera]	[more]

BLAST of CcUC07G132410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC07G132410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5EPW6	2.3e-12	36.17	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_165940 PE=4 SV...	[more]
A0A2P5C604	9.7e-11	36.43	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A5A7U886	1.3e-07	48.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A5C1L2	2.9e-07	50.00	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_039647 PE=4 SV=1	[more]

BLAST of CcUC07G132410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC07G132410.1	CcUC07G132410.1	mRNA