CcUC06G118880 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G118880
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr06: 14382178 .. 14383954 (+)
RNA-Seq ExpressionCcUC06G118880
SyntenyCcUC06G118880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGGTTTGACTTTCCTTTACTTTCTTTATCCGACCCTGGAACTAGATCTGTTGAAGGTAAGGTTTCGTCTACTAGATCAACTAAGACAGCAACAGCTTCCGTTTATGAGTGCGAGACTAAAGAGGTAATCAATAAGACCAAATTGGATCGAGATTTGTTGACCTTCGCAATAGCTACGAAATCAAGGTATAGGTGCTTTTCTTCTCCTATTCGAAGACCCTTGGCTGAAAGAGAAATCGAGGATCAAGAAAGATATAAAGAAGAGGTCTCAACTCCACTACAAGAAGATTGGTTGCTCTCTACTTCCTCATTCTCATCCTCGGATTCTTCCTATAACCCGTGCTCAGGAATTTCATCTTCGCATACCTCGTCTCGTTCTTTCCAATCAAAGAACTTTTCCACGCTACTTTTTCAATCAAGAAAGTCCTCGGGATGCAATCGGCCATGGAAATTTTGAACGTCCACTTTGATCCCACGATCTCCTTTTTATTGAAGCCCTTCTCAATTAGAAATAAGGCCCACATTCAAAAAATCTCAATCGAAATTGGCTGGAACTTCTTCTTCATGAATAGTTCCTTGATCATGTGATCGGATCTAGTCGATCGGATTTGAATCGGAGGTCTTGAACTCGAGTTTGTGAAAGACTCTTGCCGCCCCTTTCATTTAAGCCCTTTTTTTTATTGCCCTAAAAAGAAGACCCGGCTTCTTCTTCTTTCTTTTACGAATCCGGCAAGCAAAAATCCTTTCTTCTCTTGAGTGATTGCTTGAGTTAAGCCTTCTTGACTCGTTTTGAGTCCCGATTTTCAGTCCTTGGATGATCTTTCGGGTCTGAGTACAATGGATTCCATAGGCGTTTCCCGTGCTCTTCCGAAAGAAGCATCTGGAAATGACTTGTCATGGGCTTATGCGATGAAGAATGATTTGCTCGGGAAAAAATTTTGTGCTTATGTGGATGGGTCGCTTCAATTTCCCAAGACTCGAGAAGGATATTTTCCTACAAAAGATGAAAAGTGCTTAGCTTCAAATGAGATGACTTGTGTACTTCCTTTGAGCCCCATATACACCGTCACCTCTTTTGCGACCGCTAAAGATATTTGGGAAACCATAAGTCATCTTGATTCTCAGGATGATTCTCCACCTTTCTATCAGTTGCAACATGAAGAACATGCCTTAGCTTATGGGTAAAATCAAGAAAGAAGTTTGCTATACTATTTATTACCGAAGGCTTAGGCTTCTATGGGACCAGCTGAACATGAGGGACTCCTTTCAAAGATAGGGGCACCGATCGATTCGAATTCTAAAGGCTCTTGTCGGGAAGAATTTCATCTAACATAGAATAGCCTTCTAGAGTATAGAGTATAAAGGGGCTCTCTAAGTTTTTGATGGGCTTGAGGCCTGAGTTCGAGAATGTTAGATCCTCAATTCAACATCGAGTTACTCCACCAGACATTGAGAGAGCTGTTTCTGATGTGAGATCCGAGGAGACTCGACTTGAGCCCCAAAACTAGGTTGGGTGCAGGGGGTCGATCTTGATTTTATTACTCAGGGTGCTTCAGATCAGGTTCTTGCAGCTGAACATGCTTCGGGACATCGACCCTATGGTCAGAATCTTCAATCTGGAAGCTCCGCTGGTGCATCAAGCCAACAAGACATGTCCAAGATCATATGCCAGTAAGAAAACTAGGTATGTAAATACCTCTGCGGGTGGTGCTTTACCTGGAACAGCGTCTGAATCGACTGGCGATATCCCTGCTACTGATGATACCCCCTGA

mRNA sequence

ATGGAAAGGTTTGACTTTCCTTTACTTTCTTTATCCGACCCTGGAACTAGATCTGTTGAAGGTAAGGTTTCGTCTACTAGATCAACTAAGACAGCAACAGCTTCCGTTTATGAGTGCGAGACTAAAGAGGTAATCAATAAGACCAAATTGGATCGAGATTTGTTGACCTTCGCAATAGCTACGAAATCAAGGTATAGGTGCTTTTCTTCTCCTATTCGAAGACCCTTGGCTGAAAGAGAAATCGAGGATCAAGAAAGATATAAAGAAGAGTCCTTGGATGATCTTTCGGGTCTGAGTACAATGGATTCCATAGGCGTTTCCCGTGCTCTTCCGAAAGAAGCATCTGGAAATGACTTGTCATGGGCTTATGCGATGAAGAATGATTTGCTCGGGAAAAAATTTTGTGCTTATGTGGATGGGTCGCTTCAATTTCCCAAGACTCGAGAAGGATATTTTCCTACAAAAGATGAAAAGTGCTTAGCTTCAAATGAGATGACTTGTGTACTTCCTTTGAGCCCCATATACACCGTCACCTCTTTTGCGACCGCTAAAGATATTTGGGAAACCATAAGTCATCTTGATTCTCAGGATGATTCTCCACCTTTCTATCAGTTGCAACATGAAGAACATGCCTTAGCTTATGGGGTGCTTCAGATCAGGTTCTTGCAGCTGAACATGCTTCGGGACATCGACCCTATGGTCAGAATCTTCAATCTGGAAGCTCCGCTGGTGCATCAAGCCAACAAGACATGTCCAAGATCATATGCCAGTAAGAAAACTAGGTATGTAAATACCTCTGCGGGTGGTGCTTTACCTGGAACAGCGTCTGAATCGACTGGCGATATCCCTGCTACTGATGATACCCCCTGA

Coding sequence (CDS)

ATGGAAAGGTTTGACTTTCCTTTACTTTCTTTATCCGACCCTGGAACTAGATCTGTTGAAGGTAAGGTTTCGTCTACTAGATCAACTAAGACAGCAACAGCTTCCGTTTATGAGTGCGAGACTAAAGAGGTAATCAATAAGACCAAATTGGATCGAGATTTGTTGACCTTCGCAATAGCTACGAAATCAAGGTATAGGTGCTTTTCTTCTCCTATTCGAAGACCCTTGGCTGAAAGAGAAATCGAGGATCAAGAAAGATATAAAGAAGAGTCCTTGGATGATCTTTCGGGTCTGAGTACAATGGATTCCATAGGCGTTTCCCGTGCTCTTCCGAAAGAAGCATCTGGAAATGACTTGTCATGGGCTTATGCGATGAAGAATGATTTGCTCGGGAAAAAATTTTGTGCTTATGTGGATGGGTCGCTTCAATTTCCCAAGACTCGAGAAGGATATTTTCCTACAAAAGATGAAAAGTGCTTAGCTTCAAATGAGATGACTTGTGTACTTCCTTTGAGCCCCATATACACCGTCACCTCTTTTGCGACCGCTAAAGATATTTGGGAAACCATAAGTCATCTTGATTCTCAGGATGATTCTCCACCTTTCTATCAGTTGCAACATGAAGAACATGCCTTAGCTTATGGGGTGCTTCAGATCAGGTTCTTGCAGCTGAACATGCTTCGGGACATCGACCCTATGGTCAGAATCTTCAATCTGGAAGCTCCGCTGGTGCATCAAGCCAACAAGACATGTCCAAGATCATATGCCAGTAAGAAAACTAGGTATGTAAATACCTCTGCGGGTGGTGCTTTACCTGGAACAGCGTCTGAATCGACTGGCGATATCCCTGCTACTGATGATACCCCCTGA

Protein sequence

MERFDFPLLSLSDPGTRSVEGKVSSTRSTKTATASVYECETKEVINKTKLDRDLLTFAIATKSRYRCFSSPIRRPLAEREIEDQERYKEESLDDLSGLSTMDSIGVSRALPKEASGNDLSWAYAMKNDLLGKKFCAYVDGSLQFPKTREGYFPTKDEKCLASNEMTCVLPLSPIYTVTSFATAKDIWETISHLDSQDDSPPFYQLQHEEHALAYGVLQIRFLQLNMLRDIDPMVRIFNLEAPLVHQANKTCPRSYASKKTRYVNTSAGGALPGTASESTGDIPATDDTP
Homology
BLAST of CcUC06G118880 vs. NCBI nr
Match: WP_131767158.1 (hypothetical protein [Candidatus Frankia datiscae])

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-51
Identity = 102/115 (88.70%), Postives = 107/115 (93.04%), Query Frame = 0

Query: 101 MDSIGVSRALPKEASGNDLSWAYAMKNDLLGKKFCAYVDGSLQFPKTREGYFPTKDEKCL 160
           MDSIG SRALPKE SGNDLSW YAMKNDLLGK F AYVDGSLQFPKTREG FPTKDEKCL
Sbjct: 1   MDSIGFSRALPKEVSGNDLSWTYAMKNDLLGKPFFAYVDGSLQFPKTREGDFPTKDEKCL 60

Query: 161 ASNEMTCVLPLSPIYTVTSFATAKDIWETISHLDSQDDSPPFYQLQHEEHALAYG 216
           ASN +TCVLPLSPIYTVTSFATAKD+++ ISHLDSQ+DSPPFYQLQHEEHALAYG
Sbjct: 61  ASNGITCVLPLSPIYTVTSFATAKDLFDYISHLDSQEDSPPFYQLQHEEHALAYG 115

BLAST of CcUC06G118880 vs. NCBI nr
Match: TQE08519.1 (hypothetical protein C1H46_005825 [Malus baccata])

HSP 1 Score: 149.4 bits (376), Expect = 4.6e-32
Identity = 77/99 (77.78%), Postives = 78/99 (78.79%), Query Frame = 0

Query: 92  LDDLSGLSTMDSIGVSRALPKEASGNDLSWAYAMKNDLLGKK-FCAYVDGSLQFPKTREG 151
           L +  GLSTMDSIG S ALPKEASGN LSWAYAMKNDLLGKK  CAYVDGSLQFPKTREG
Sbjct: 120 LTETRGLSTMDSIGFSCALPKEASGNYLSWAYAMKNDLLGKKESCAYVDGSLQFPKTREG 179

Query: 152 YFPTKDEKCLASNEMTCVLPLSPIYTVTSFATAKDIWET 190
            FPTKDEKCLASN MTCVLPLSPIYT          W T
Sbjct: 180 DFPTKDEKCLASNGMTCVLPLSPIYTSPLLRLLNIFWIT 218

BLAST of CcUC06G118880 vs. NCBI nr
Match: KAF3452199.1 (hypothetical protein FNV43_RR08297 [Rhamnella rubrinervis])

HSP 1 Score: 106.7 bits (265), Expect = 3.4e-19
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 90  ESLDDLSGLSTMDSIGVSRALPKEASGNDLSWAYAMKNDLLGKKFCAYVDGSLQFPKTRE 149
           +SLDDL+GLSTMDSIG SRALPKEASGN L WAYAMKN  LGKK CAYVDGSLQFPKTRE
Sbjct: 558 KSLDDLAGLSTMDSIGFSRALPKEASGNYLPWAYAMKNYFLGKKSCAYVDGSLQFPKTRE 617

BLAST of CcUC06G118880 vs. NCBI nr
Match: KJB09756.1 (hypothetical protein B456_001G162300 [Gossypium raimondii])

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-10
Identity = 64/175 (36.57%), Postives = 73/175 (41.71%), Query Frame = 0

Query: 106 VSRALPKEASGNDLSWAYAMKNDLLGKKFCAYVDGSLQFPKTREGYFPTKDEKCLASNEM 165
           +SRALPKEASGNDLSWAYAMKNDL GK  CAYVDGSL                       
Sbjct: 647 LSRALPKEASGNDLSWAYAMKNDLRGKNSCAYVDGSL----------------------- 706

Query: 166 TCVLPLSPIYTVTSFATAKDIWETISHLDSQDDSPPFYQLQHEEHALAYGVLQIRFLQLN 225
                               +W+                                  Q N
Sbjct: 707 --------------------LWD----------------------------------QPN 743

Query: 226 MLRDIDPMVRIFNLEAPLV--HQANKTCPRSYASKKTRYVNTSAGGALPGTASES 279
           MLRDIDPMVRIFNLEA L   H    +  R  A+ + R  +T+   ALP T +ES
Sbjct: 767 MLRDIDPMVRIFNLEALLKPGHMIADSRKRQNANSR-RQSDTAHLAALPETPTES 743

BLAST of CcUC06G118880 vs. NCBI nr
Match: PHU02075.1 (hypothetical protein BC332_27326 [Capsicum chinense])

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-06
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 101 MDSIGVSRALPKEASGNDLSWAYAMKNDLLGKK 134
           MDSIG SRAL KEASGNDLSWAYAMKNDLLGKK
Sbjct: 1   MDSIGFSRALLKEASGNDLSWAYAMKNDLLGKK 33

BLAST of CcUC06G118880 vs. ExPASy TrEMBL
Match: A0A2N9G8J8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26859 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 8.5e-56
Identity = 111/126 (88.10%), Postives = 115/126 (91.27%), Query Frame = 0

Query: 90  ESLDDLSGLSTMDSIGVSRALPKEASGNDLSWAYAMKNDLLGKKFCAYVDGSLQFPKTRE 149
           + LDDLSGLSTMDSIG SRALPKEASGNDLSWAYAMKNDLLGKK CAYV GSLQF KTRE
Sbjct: 294 QPLDDLSGLSTMDSIGFSRALPKEASGNDLSWAYAMKNDLLGKKSCAYVGGSLQFSKTRE 353

Query: 150 GYFPTKDEKCLASNEMTCVLPLSPIYTVTSFATAKDIWETISHLDSQDDSPPFYQLQHEE 209
           G FPTKDEKCLA N M CVLPLSPIYTVTSFATAK+IW+ IS+L SQDDSPPFYQLQHEE
Sbjct: 354 GDFPTKDEKCLALNGMPCVLPLSPIYTVTSFATAKEIWDYISNLYSQDDSPPFYQLQHEE 413

Query: 210 HALAYG 216
           HALAYG
Sbjct: 414 HALAYG 419

BLAST of CcUC06G118880 vs. ExPASy TrEMBL
Match: A0A540NBV2 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_005825 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.2e-32
Identity = 77/99 (77.78%), Postives = 78/99 (78.79%), Query Frame = 0

Query: 92  LDDLSGLSTMDSIGVSRALPKEASGNDLSWAYAMKNDLLGKK-FCAYVDGSLQFPKTREG 151
           L +  GLSTMDSIG S ALPKEASGN LSWAYAMKNDLLGKK  CAYVDGSLQFPKTREG
Sbjct: 120 LTETRGLSTMDSIGFSCALPKEASGNYLSWAYAMKNDLLGKKESCAYVDGSLQFPKTREG 179

Query: 152 YFPTKDEKCLASNEMTCVLPLSPIYTVTSFATAKDIWET 190
            FPTKDEKCLASN MTCVLPLSPIYT          W T
Sbjct: 180 DFPTKDEKCLASNGMTCVLPLSPIYTSPLLRLLNIFWIT 218

BLAST of CcUC06G118880 vs. ExPASy TrEMBL
Match: A0A0D2PZN2 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G162300 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-10
Identity = 64/175 (36.57%), Postives = 73/175 (41.71%), Query Frame = 0

Query: 106 VSRALPKEASGNDLSWAYAMKNDLLGKKFCAYVDGSLQFPKTREGYFPTKDEKCLASNEM 165
           +SRALPKEASGNDLSWAYAMKNDL GK  CAYVDGSL                       
Sbjct: 647 LSRALPKEASGNDLSWAYAMKNDLRGKNSCAYVDGSL----------------------- 706

Query: 166 TCVLPLSPIYTVTSFATAKDIWETISHLDSQDDSPPFYQLQHEEHALAYGVLQIRFLQLN 225
                               +W+                                  Q N
Sbjct: 707 --------------------LWD----------------------------------QPN 743

Query: 226 MLRDIDPMVRIFNLEAPLV--HQANKTCPRSYASKKTRYVNTSAGGALPGTASES 279
           MLRDIDPMVRIFNLEA L   H    +  R  A+ + R  +T+   ALP T +ES
Sbjct: 767 MLRDIDPMVRIFNLEALLKPGHMIADSRKRQNANSR-RQSDTAHLAALPETPTES 743

BLAST of CcUC06G118880 vs. ExPASy TrEMBL
Match: A0A2G3B6G0 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_27326 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.5e-07
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 101 MDSIGVSRALPKEASGNDLSWAYAMKNDLLGKK 134
           MDSIG SRAL KEASGNDLSWAYAMKNDLLGKK
Sbjct: 1   MDSIGFSRALLKEASGNDLSWAYAMKNDLLGKK 33

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
WP_131767158.11.2e-5188.70hypothetical protein [Candidatus Frankia datiscae][more]
TQE08519.14.6e-3277.78hypothetical protein C1H46_005825 [Malus baccata][more]
KAF3452199.13.4e-1986.67hypothetical protein FNV43_RR08297 [Rhamnella rubrinervis][more]
KJB09756.12.9e-1036.57hypothetical protein B456_001G162300 [Gossypium raimondii][more]
PHU02075.12.0e-0693.94hypothetical protein BC332_27326 [Capsicum chinense][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9G8J88.5e-5688.10Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26859 PE=4 SV=1[more]
A0A540NBV22.2e-3277.78Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_005825 PE=3 SV=1[more]
A0A0D2PZN21.4e-1036.57Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G162300 PE=4 ... [more]
A0A2G3B6G09.5e-0793.94Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_27326 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 266..289

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G118880.1CcUC06G118880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane