CcUC05G107010 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G107010
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RRM domain-containing protein
Location	CicolChr05: 34055153 .. 34056876 (+)
RNA-Seq Expression	CcUC05G107010
Synteny	CcUC05G107010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCGGAGGTGGAATTGGGGCATAAAGCAAAATCATCATCTTTATTGGCGCCGCCCATTCTTTGCCGCCGCACCACCGAGAAGCCATGGGTCGCAAGAGAGATAAACCCTACCCTTCCCCCCACCTCTCTACCTCCGTCTCTAAGAGACGACGCCCTCCGCCGCCCACGGAGGACGATGATATAGACAAGCCCTTGTCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTACCTTCACACTGTTCGGTCCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCACTTATCGCACCAAAGACTCCGCCGATGCTGCCATGGCCGCCGCCCTTGATCCCTCCTTCGCCTTCACCATTGATTCCAAAAAGGTACCTTCTGCCCTCTGCCCTTCTGAAGTAGAAAGAACTCTTGGCGAAAAGGGAGAGTAAATTGAAGCTCTTACTCTGATCATTGTTGAGTGGAGATTTATGTACCAGATTTAGTTTAATTTCTACTGTTTGCTACAATTCTCGCATTCTTGAACTTAGGATTTGGAACTATTCTTTCTTCTGTTTGCTTCCGAACAAAGAATCTCAACACCCATCTGAATTTAGGTCCTGATTTTGCGTGCAAATATCTATTTGTATAGAGCTTGAGACTGCATTGGATTTGCTGCTCTGATATTTGTCATTCTGAATGATGAAATTGAGGACATTTCCACAGGTTCAGGTGCTATGGGCGAATGATCCTCAAGTCCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAATAAGGAATTGTCTTCAAAGCTCTTGCGGGCGGAAGTGCCGCTGAGCAGACATGGAAGAAGCAATAAGCTTGCTTCAACCATTGTCAACTCCAGTAGAAGCGACAGTTCTTCAAGGTCGGATGTGCCTTTCAGGGGCAGGGAAGTTGTTGCCTACGATGATCTTCTCTAAGTTCATAGATTGTTTCATTTGATAGTTTGGCTGCCCTTTTGTTTTCTCCTTTTCTTTTGGTGTGGTATAGTGTAGTATAGATTGAGTTCTTAAGTGTATAACTGTTTTATGCTAGTTGCCTCCCATTCCCCTTGATTCTTGTTGATTCAAGCTTCTTTATGATCCCAAATCCAAGTTTGTGTTAATGTATATCTATACCATTTATTGAAGGAAACTCAAGCTTCTCACCAAAGCTTTGCTGCTTACTTAATTACTGTGTTCTCTTAATTATGCTTTGACCTTCCCTTGCTATACGAGCTTCTTCAAGAGCATAGAACTTCCTCTAAGAAGACGGCGTCTATGATCGTTTGGGAGAAGTTGTAGTAGCTATGAGAACTTGACTAACATTAAGTAAGAACTTTAATGGAGTGATCAACTGTATAACTTTTATTGAATTCTGATCTTGAATATCCTTGGGATAAGCAGGAACTGTTTATCTTGCTTGTTCTTGTTCTTGCTCCACTTGTTCTATATGTTTTGGTGAGTTCTATTTGTTAATATATATATATATATATATATATATATATATATAATAAGTTGTGGGCGTTTTATGCTTGGTTTAAACTTTATGAGCTTGTCTCGGGATTTTTTTTTTCCCATCGTTAGAATGTTGAAGTTTGGATTTGTATCATTTGGAGTTTTGCGTCTTAAATGTAGGTTGCGCAGAGAAAGCATGCAATTTCACCAACCTAA

mRNA sequence

GGCCGGAGGTGGAATTGGGGCATAAAGCAAAATCATCATCTTTATTGGCGCCGCCCATTCTTTGCCGCCGCACCACCGAGAAGCCATGGGTCGCAAGAGAGATAAACCCTACCCTTCCCCCCACCTCTCTACCTCCGTCTCTAAGAGACGACGCCCTCCGCCGCCCACGGAGGACGATGATATAGACAAGCCCTTGTCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTACCTTCACACTGTTCGGTCCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCACTTATCGCACCAAAGACTCCGCCGATGCTGCCATGGCCGCCGCCCTTGATCCCTCCTTCGCCTTCACCATTGATTCCAAAAAGGTTCAGGTGCTATGGGCGAATGATCCTCAAGTCCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAATAAGGAATTGTCTTCAAAGCTCTTGCGGGCGGAAGTGCCGCTGAGCAGACATGGAAGAAGCAATAAGCTTGCTTCAACCATTGTCAACTCCAGTAGAAGCGACAGTTCTTCAAGGTCGGATGTGCCTTTCAGGGGCAGGGAAGTTGCGCAGAGAAAGCATGCAATTTCACCAACCTAA

Coding sequence (CDS)

ATGGGTCGCAAGAGAGATAAACCCTACCCTTCCCCCCACCTCTCTACCTCCGTCTCTAAGAGACGACGCCCTCCGCCGCCCACGGAGGACGATGATATAGACAAGCCCTTGTCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTACCTTCACACTGTTCGGTCCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCACTTATCGCACCAAAGACTCCGCCGATGCTGCCATGGCCGCCGCCCTTGATCCCTCCTTCGCCTTCACCATTGATTCCAAAAAGGTTCAGGTGCTATGGGCGAATGATCCTCAAGTCCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAATAAGGAATTGTCTTCAAAGCTCTTGCGGGCGGAAGTGCCGCTGAGCAGACATGGAAGAAGCAATAAGCTTGCTTCAACCATTGTCAACTCCAGTAGAAGCGACAGTTCTTCAAGGTCGGATGTGCCTTTCAGGGGCAGGGAAGTTGCGCAGAGAAAGCATGCAATTTCACCAACCTAA

Protein sequence

MGRKRDKPYPSPHLSTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNSSRSDSSSRSDVPFRGREVAQRKHAISPT

Homology

[Close]

BLAST of CcUC05G107010 vs. NCBI nr
Match: XP_038892024.1 (uncharacterized protein At1g27050 [Benincasa hispida])

HSP 1 Score: 335.1 bits (858), Expect = 4.0e-88
Identity = 174/187 (93.05%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHLSTSVSKRRRPPP----PTEDDDIDKPLSKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS HL TSV+KRRRPPP    PTED+D+DKPLSKPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSSHLPTSVAKRRRPPPPAPSPTEDEDMDKPLSKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNSSRSDSSSRSDV 180
           ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLASTIVN  RS+SSSRSDV
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSNSSSRSDV 180

Query: 181 PFRGREV 184
           PFRGREV
Sbjct: 181 PFRGREV 187

[Close]

BLAST of CcUC05G107010 vs. NCBI nr
Match: XP_011655662.1 (uncharacterized protein At1g27050 [Cucumis sativus] >KGN51877.1 hypothetical protein Csa_008956 [Cucumis sativus])

HSP 1 Score: 330.9 bits (847), Expect = 7.5e-87
Identity = 169/183 (92.35%), Postives = 174/183 (95.08%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHLSTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVVVDLPSHCSVLDL 60
           MGRKRDKPYPS HL TS  KRRRPPP TE+DD++KP+SKPAPPLALVVVDLPSHCSVLDL
Sbjct: 1   MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDL 60

Query: 61  KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLWANDP 120
           KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM AALDPSFAFTIDSKKVQVLWANDP
Sbjct: 61  KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLWANDP 120

Query: 121 QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNSSRSDSSSRSDVPFRG 180
           QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLAS IVN  RS+SSSRSDVPFRG
Sbjct: 121 QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRG 180

Query: 181 REV 184
           REV
Sbjct: 181 REV 183

[Close]

BLAST of CcUC05G107010 vs. NCBI nr
Match: TYK15537.1 (thaumatin-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 329.7 bits (844), Expect = 1.7e-86
Identity = 169/183 (92.35%), Postives = 174/183 (95.08%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHLSTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVVVDLPSHCSVLDL 60
           MGRKRDKPYPS HL TS +KRRRPPP T DDD++KP+SKPAPPLALVVVDLPS CSVLDL
Sbjct: 265 MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDL 324

Query: 61  KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLWANDP 120
           KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM AALDPSFAFTIDSKKVQVLWANDP
Sbjct: 325 KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLWANDP 384

Query: 121 QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNSSRSDSSSRSDVPFRG 180
           QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVN  RS+SSSRSDVPFRG
Sbjct: 385 QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRG 444

Query: 181 REV 184
           REV
Sbjct: 445 REV 447

[Close]

BLAST of CcUC05G107010 vs. NCBI nr
Match: XP_008446301.1 (PREDICTED: uncharacterized protein At1g27050 [Cucumis melo] >KAA0034382.1 Homeobox-leucine zipper protein ATHB-54 [Cucumis melo var. makuwa])

HSP 1 Score: 329.7 bits (844), Expect = 1.7e-86
Identity = 169/183 (92.35%), Postives = 174/183 (95.08%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHLSTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVVVDLPSHCSVLDL 60
           MGRKRDKPYPS HL TS +KRRRPPP T DDD++KP+SKPAPPLALVVVDLPS CSVLDL
Sbjct: 1   MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDL 60

Query: 61  KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLWANDP 120
           KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM AALDPSFAFTIDSKKVQVLWANDP
Sbjct: 61  KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLWANDP 120

Query: 121 QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNSSRSDSSSRSDVPFRG 180
           QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVN  RS+SSSRSDVPFRG
Sbjct: 121 QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRG 180

Query: 181 REV 184
           REV
Sbjct: 181 REV 183

[Close]

BLAST of CcUC05G107010 vs. NCBI nr
Match: XP_023537967.1 (uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.9 bits (816), Expect = 2.9e-83
Identity = 165/187 (88.24%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHLSTSVSKRRRPPP----PTEDDDIDKPLSKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPSPH STS +KRRR  P    P EDDD+DKPL KPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMAAALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNSSRSDSSSRSDV 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLAST+VN  +S+SSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKSNSSSRSDE 180

Query: 181 PFRGREV 184
           PFRGREV
Sbjct: 181 PFRGREV 187

[Close]

BLAST of CcUC05G107010 vs. ExPASy Swiss-Prot
Match: P0CJ66 (Uncharacterized protein At1g27050 OS=Arabidopsis thaliana OX=3702 GN=At1g27050 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.9e-47
Identity = 100/176 (56.82%), Postives = 134/176 (76.14%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHLSTSVSKRRRPPPPT---EDDDIDKPLSKPAPPLALVVVDLPSHCSV 60
           M RKRDKPY + H    +SKRRRP  P+    D+ IDKP++KP PP ALVV+ LP++CSV
Sbjct: 1   MSRKRDKPYTNRHTPARISKRRRPWAPSSSEHDEIIDKPITKPPPPPALVVMGLPANCSV 60

Query: 61  LDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLWA 120
           L+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A + +PSF  +IDSKK++V+WA
Sbjct: 61  LELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVWA 120

Query: 121 NDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASTIVNSSRSDSS 172
            DP V+W++G+  G  K +    SSKLLR  +PL +HGRS++LAS IVN  RSD++
Sbjct: 121 TDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVN-PRSDNT 175

[Close]

BLAST of CcUC05G107010 vs. ExPASy TrEMBL
Match: A0A0A0KTW9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604220 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.6e-87
Identity = 169/183 (92.35%), Postives = 174/183 (95.08%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHLSTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVVVDLPSHCSVLDL 60
           MGRKRDKPYPS HL TS  KRRRPPP TE+DD++KP+SKPAPPLALVVVDLPSHCSVLDL
Sbjct: 1   MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDL 60

Query: 61  KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLWANDP 120
           KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM AALDPSFAFTIDSKKVQVLWANDP
Sbjct: 61  KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLWANDP 120

Query: 121 QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNSSRSDSSSRSDVPFRG 180
           QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLAS IVN  RS+SSSRSDVPFRG
Sbjct: 121 QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRG 180

Query: 181 REV 184
           REV
Sbjct: 181 REV 183

[Close]

BLAST of CcUC05G107010 vs. ExPASy TrEMBL
Match: A0A5A7STE1 (Homeobox-leucine zipper protein ATHB-54 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G003870 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.1e-87
Identity = 169/183 (92.35%), Postives = 174/183 (95.08%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHLSTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVVVDLPSHCSVLDL 60
           MGRKRDKPYPS HL TS +KRRRPPP T DDD++KP+SKPAPPLALVVVDLPS CSVLDL
Sbjct: 1   MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDL 60

Query: 61  KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLWANDP 120
           KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM AALDPSFAFTIDSKKVQVLWANDP
Sbjct: 61  KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLWANDP 120

Query: 121 QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNSSRSDSSSRSDVPFRG 180
           QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVN  RS+SSSRSDVPFRG
Sbjct: 121 QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRG 180

Query: 181 REV 184
           REV
Sbjct: 181 REV 183

[Close]

BLAST of CcUC05G107010 vs. ExPASy TrEMBL
Match: A0A5D3CUC0 (Thaumatin-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00290 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.1e-87
Identity = 169/183 (92.35%), Postives = 174/183 (95.08%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHLSTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVVVDLPSHCSVLDL 60
           MGRKRDKPYPS HL TS +KRRRPPP T DDD++KP+SKPAPPLALVVVDLPS CSVLDL
Sbjct: 265 MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDL 324

Query: 61  KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLWANDP 120
           KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM AALDPSFAFTIDSKKVQVLWANDP
Sbjct: 325 KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLWANDP 384

Query: 121 QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNSSRSDSSSRSDVPFRG 180
           QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVN  RS+SSSRSDVPFRG
Sbjct: 385 QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRG 444

Query: 181 REV 184
           REV
Sbjct: 445 REV 447

[Close]

BLAST of CcUC05G107010 vs. ExPASy TrEMBL
Match: A0A1S3BE88 (uncharacterized protein At1g27050 OS=Cucumis melo OX=3656 GN=LOC103489077 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.1e-87
Identity = 169/183 (92.35%), Postives = 174/183 (95.08%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHLSTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVVVDLPSHCSVLDL 60
           MGRKRDKPYPS HL TS +KRRRPPP T DDD++KP+SKPAPPLALVVVDLPS CSVLDL
Sbjct: 1   MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDL 60

Query: 61  KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLWANDP 120
           KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM AALDPSFAFTIDSKKVQVLWANDP
Sbjct: 61  KSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLWANDP 120

Query: 121 QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNSSRSDSSSRSDVPFRG 180
           QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVN  RS+SSSRSDVPFRG
Sbjct: 121 QVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRG 180

Query: 181 REV 184
           REV
Sbjct: 181 REV 183

[Close]

BLAST of CcUC05G107010 vs. ExPASy TrEMBL
Match: A0A6J1GYQ1 (uncharacterized protein At1g27050 OS=Cucurbita moschata OX=3662 GN=LOC111458691 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.9e-83
Identity = 165/187 (88.24%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHLSTSVSKRRRPPP----PTEDDDIDKPLSKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPSPH STS +KRRR  P    P EDDD+DKPL KPAPP+ALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMAAALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNSSRSDSSSRSDV 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVN  +S+SSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREV 184
           PFRGREV
Sbjct: 181 PFRGREV 187

[Close]

BLAST of CcUC05G107010 vs. TAIR 10
Match: AT1G27050.1 (homeobox protein 54 )

HSP 1 Score: 188.3 bits (477), Expect = 5.6e-48
Identity = 100/176 (56.82%), Postives = 134/176 (76.14%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHLSTSVSKRRRPPPPT---EDDDIDKPLSKPAPPLALVVVDLPSHCSV 60
           M RKRDKPY + H    +SKRRRP  P+    D+ IDKP++KP PP ALVV+ LP++CSV
Sbjct: 1   MSRKRDKPYTNRHTPARISKRRRPWAPSSSEHDEIIDKPITKPPPPPALVVMGLPANCSV 60

Query: 61  LDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLWA 120
           L+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A + +PSF  +IDSKK++V+WA
Sbjct: 61  LELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVWA 120

Query: 121 NDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASTIVNSSRSDSS 172
            DP V+W++G+  G  K +    SSKLLR  +PL +HGRS++LAS IVN  RSD++
Sbjct: 121 TDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVN-PRSDNT 175

The following BLAST results are available for this feature:

BLAST of CcUC05G107010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892024.1	4.0e-88	93.05	uncharacterized protein At1g27050 [Benincasa hispida]	[more]
XP_011655662.1	7.5e-87	92.35	uncharacterized protein At1g27050 [Cucumis sativus] >KGN51877.1 hypothetical pro...	[more]
TYK15537.1	1.7e-86	92.35	thaumatin-like protein 1 [Cucumis melo var. makuwa]	[more]
XP_008446301.1	1.7e-86	92.35	PREDICTED: uncharacterized protein At1g27050 [Cucumis melo] >KAA0034382.1 Homeob...	[more]
XP_023537967.1	2.9e-83	88.24	uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CcUC05G107010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CJ66	7.9e-47	56.82	Uncharacterized protein At1g27050 OS=Arabidopsis thaliana OX=3702 GN=At1g27050 P...	[more]

BLAST of CcUC05G107010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTW9	3.6e-87	92.35	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604220 PE=4 SV...	[more]
A0A5A7STE1	8.1e-87	92.35	Homeobox-leucine zipper protein ATHB-54 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CUC0	8.1e-87	92.35	Thaumatin-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BE88	8.1e-87	92.35	uncharacterized protein At1g27050 OS=Cucumis melo OX=3656 GN=LOC103489077 PE=4 S...	[more]
A0A6J1GYQ1	1.9e-83	88.24	uncharacterized protein At1g27050 OS=Cucurbita moschata OX=3662 GN=LOC111458691 ...	[more]

BLAST of CcUC05G107010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27050.1	5.6e-48	56.82	homeobox protein 54	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 45..115 e-value: 1.4E-4 score: 31.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 46..97 e-value: 6.2E-7 score: 29.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 44..119 score: 10.974183
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..125 e-value: 3.2E-9 score: 38.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..193
None	No IPR available	CDD	cd00590	RRM_SF	coord: 46..90 e-value: 4.79364E-6 score: 41.1365
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 22..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G107010.1	CcUC05G107010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding