CcUC03G054290 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC03G054290
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Photosystem II CP47 reaction center protein
Location	CicolChr03: 25048574 .. 25049407 (-)
RNA-Seq Expression	CcUC03G054290
Synteny	CcUC03G054290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGTATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCAATTCATGGGGGGGTTGGAGTATCACAGGAGGGACTATAACGAATCCGGGTATTTGGAGTTACGAAGGTGTGGCCGGAGCACATATTGTGTTTTCTGGATTGTGCTTCTTAGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCGAAGATTTTTGGAATTCATTTATTTCTCTCAGGGTTGGGTTGCTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCCGGGAATCTGGGTATCCGATCCTTATGGATTAACCGGAAGGGTACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCGCATCATATTGCAGCAGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTTCGTCCGCCCCAACGTCTATACAAAGGATTACGTATGGGAAATATTGAAACCGTCCTTTCGAGTAGTATCGCTGCTGTATTTTTTGCAGCTTTTGNAAACATATTTTCGAAAAGATGGTCATTTAATCTTACCCAAAACAAACAAAAGGTAAGTTTAGTATAACTTAAAATCAGTGATATTAATAGCGATCGTTAACAAGAGGCTAATGATCACTTACCAATGAATTGTTGATCATAGATAGACGATAGCTTACATGTAGTTGGCAACCGCCATGCTATATGTTAG

mRNA sequence

ATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGTATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCAATTCATGGGGGGGTTGGAGTATCACAGGAGGGACTATAACGAATCCGGGTATTTGGAGTTACGAAGGTGTGGCCGGAGCACATATTGTGTTTTCTGGATTGTGCTTCTTAGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCGAAGATTTTTGGAATTCATTTATTTCTCTCAGGGTTGGGTTGCTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCCGGGAATCTGGGTATCCGATCCTTATGGATTAACCGGAAGGGTACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCGCATCATATTGCAGCAGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTTCGTCCGCCCCAACGTCTATACAAAGGATTACGTATGGGAAATATTGAAACCGTCCTTTCGAGTAGTATCGCTGCTGTATTTTTTGCAGCTTTTGNAAACATATTTTCGAAAAGATGGTCATTTAATCTTACCCAAAACAAACAAAAGATAGACGATAGCTTACATGTAGTTGGCAACCGCCATGCTATATGTTAG

Coding sequence (CDS)

ATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGTATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCAATTCATGGGGGGGTTGGAGTATCACAGGAGGGACTATAACGAATCCGGGTATTTGGAGTTACGAAGGTGTGGCCGGAGCACATATTGTGTTTTCTGGATTGTGCTTCTTAGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCGAAGATTTTTGGAATTCATTTATTTCTCTCAGGGTTGGGTTGCTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCCGGGAATCTGGGTATCCGATCCTTATGGATTAACCGGAAGGGTACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCGCATCATATTGCAGCAGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTTCGTCCGCCCCAACGTCTATACAAAGGATTACGTATGGGAAATATTGAAACCGTCCTTTCGAGTAGTATCGCTGCTGTATTTTTTGCAGCTTTTGNAAACATATTTTCGAAAAGATGGTCATTTAATCTTACCCAAAACAAACAAAAGATAGACGATAGCTTACATGTAGTTGGCAACCGCCATGCTATATGTTAG

Protein sequence

MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFXNIFSKRWSFNLTQNKQKIDDSLHVVGNRHAIC

Homology

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BLAST of CcUC03G054290 vs. NCBI nr
Match: ALO21850.1 (PsbB [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 458.4 bits (1178), Expect = 4.0e-125
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF
Sbjct: 97  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

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BLAST of CcUC03G054290 vs. NCBI nr
Match: YP_009752607.1 (photosystem II 47 kDa protein [Trichosanthes homophylla] >QIT05088.1 photosystem II 47 kDa protein [Trichosanthes kirilowii] >QJD26496.1 PsbB [Trichosanthes kirilowii var. japonica] >QJD26670.1 PsbB [Trichosanthes rosthornii] >QIT05003.1 photosystem II 47 kDa protein [Trichosanthes homophylla] >QJD26321.1 PsbB [Trichosanthes kirilowii])

HSP 1 Score: 458.4 bits (1178), Expect = 4.0e-125
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF
Sbjct: 97  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

[Close]

BLAST of CcUC03G054290 vs. NCBI nr
Match: YP_009751764.1 (photosystem II 47 kDa protein [Herpetospermum pedunculosum] >QIT04497.1 photosystem II 47 kDa protein [Herpetospermum pedunculosum] >QJR52983.1 photosystem II CP47 chlorophyll apoprotein [Herpetospermum pedunculosum])

HSP 1 Score: 458.4 bits (1178), Expect = 4.0e-125
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF
Sbjct: 97  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

[Close]

BLAST of CcUC03G054290 vs. NCBI nr
Match: YP_009752522.1 (photosystem II 47 kDa protein [Trichosanthes tubiflora] >QIT04918.1 photosystem II 47 kDa protein [Trichosanthes tubiflora])

HSP 1 Score: 458.4 bits (1178), Expect = 4.0e-125
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF
Sbjct: 97  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

[Close]

BLAST of CcUC03G054290 vs. NCBI nr
Match: YP_009674417.1 (photosystem II 47 kDa protein [Siraitia grosvenorii] >QDK59416.1 photosystem II 47 kDa protein [Siraitia grosvenorii] >QDK99972.1 PsbB [Siraitia grosvenorii] >QIB71532.1 photosystem II 47 kDa protein [Siraitia grosvenorii] >QJA16170.1 photosystem II 47 kDa protein [Siraitia grosvenorii])

HSP 1 Score: 458.4 bits (1178), Expect = 4.0e-125
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF
Sbjct: 97  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

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BLAST of CcUC03G054290 vs. ExPASy Swiss-Prot
Match: Q09WZ1 (Photosystem II CP47 reaction center protein OS=Morus indica OX=248361 GN=psbB PE=3 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 5.8e-127
Identity = 212/214 (99.07%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSG+ CFGFGAF
Sbjct: 97  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGVACFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

[Close]

BLAST of CcUC03G054290 vs. ExPASy Swiss-Prot
Match: Q0ZIZ3 (Photosystem II CP47 reaction center protein OS=Vitis vinifera OX=29760 GN=psbB PE=3 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 1.3e-126
Identity = 211/214 (98.60%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGL CFGFGAF
Sbjct: 97  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLACFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTG+VQ+VNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

[Close]

BLAST of CcUC03G054290 vs. ExPASy Swiss-Prot
Match: Q2QD63 (Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 1.7e-126
Identity = 212/214 (99.07%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHI+FSGLCFLAAIWHWVYWDLEIF DERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF
Sbjct: 97  AGAHILFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

[Close]

BLAST of CcUC03G054290 vs. ExPASy Swiss-Prot
Match: A6MM62 (Photosystem II CP47 reaction center protein OS=Buxus microphylla OX=153571 GN=psbB PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 2.9e-126
Identity = 210/214 (98.13%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSG+ CFGFGAF
Sbjct: 97  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGVACFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTG+VQ+VNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

[Close]

BLAST of CcUC03G054290 vs. ExPASy Swiss-Prot
Match: A7Y3H4 (Photosystem II CP47 reaction center protein OS=Ipomoea purpurea OX=4121 GN=psbB PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 2.9e-126
Identity = 210/214 (98.13%), Postives = 212/214 (99.07%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGT+TNPGIWSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTVTNPGIWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGL CFGFGAF
Sbjct: 97  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLACFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTG+VQ VNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGKVQPVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

[Close]

BLAST of CcUC03G054290 vs. ExPASy TrEMBL
Match: A0A6H0ERV3 (Photosystem II CP47 reaction center protein OS=Trichosanthes kirilowii OX=3677 GN=psbB PE=3 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 1.9e-125
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF
Sbjct: 97  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

[Close]

BLAST of CcUC03G054290 vs. ExPASy TrEMBL
Match: G3ETS3 (Photosystem II CP47 reaction center protein OS=Cucumis melo subsp. melo OX=412675 GN=psbB PE=3 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 1.9e-125
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF
Sbjct: 97  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

[Close]

BLAST of CcUC03G054290 vs. ExPASy TrEMBL
Match: A0A1S4EU40 (Photosystem II CP47 reaction center protein OS=Cucumis melo OX=3656 GN=psbB PE=3 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 1.9e-125
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF
Sbjct: 97  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

[Close]

BLAST of CcUC03G054290 vs. ExPASy TrEMBL
Match: A0A249RZY7 (Photosystem II CP47 reaction center protein OS=Cucumis melo var. cantalupensis OX=3658 GN=psbB PE=3 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 1.9e-125
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF
Sbjct: 97  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

[Close]

BLAST of CcUC03G054290 vs. ExPASy TrEMBL
Match: A0A1P8LE33 (Photosystem II CP47 reaction center protein OS=Citrullus mucosospermus OX=519315 GN=psbB PE=3 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 1.9e-125
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF
Sbjct: 97  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

[Close]

BLAST of CcUC03G054290 vs. TAIR 10
Match: ATCG00680.1 (photosystem II reaction center protein B )

HSP 1 Score: 449.9 bits (1156), Expect = 1.3e-126
Identity = 208/214 (97.20%), Postives = 212/214 (99.07%), Query Frame = 0


Query: 1   MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGV 60
           MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGW+ITGGTITNPG+WSYEGV
Sbjct: 37  MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWNITGGTITNPGLWSYEGV 96

Query: 61  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAF 120
           AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSG+ CFGFGAF
Sbjct: 97  AGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGVACFGFGAF 156

Query: 121 HVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 180
           HVTGLYGPGIWVSDPYGLTG+VQ VNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH
Sbjct: 157 HVTGLYGPGIWVSDPYGLTGKVQPVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFH 216

Query: 181 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 215
           LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 217 LSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

The following BLAST results are available for this feature:

BLAST of CcUC03G054290 vs. NCBI nr


Match Name	E-value	Identity	Description
ALO21850.1	4.0e-125	100.00	PsbB [Cucurbita argyrosperma subsp. sororia]	[more]
YP_009752607.1	4.0e-125	100.00	photosystem II 47 kDa protein [Trichosanthes homophylla] >QIT05088.1 photosystem...	[more]
YP_009751764.1	4.0e-125	100.00	photosystem II 47 kDa protein [Herpetospermum pedunculosum] >QIT04497.1 photosys...	[more]
YP_009752522.1	4.0e-125	100.00	photosystem II 47 kDa protein [Trichosanthes tubiflora] >QIT04918.1 photosystem ...	[more]
YP_009674417.1	4.0e-125	100.00	photosystem II 47 kDa protein [Siraitia grosvenorii] >QDK59416.1 photosystem II ...	[more]

BLAST of CcUC03G054290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09WZ1	5.8e-127	99.07	Photosystem II CP47 reaction center protein OS=Morus indica OX=248361 GN=psbB PE...	[more]
Q0ZIZ3	1.3e-126	98.60	Photosystem II CP47 reaction center protein OS=Vitis vinifera OX=29760 GN=psbB P...	[more]
Q2QD63	1.7e-126	99.07	Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB P...	[more]
A6MM62	2.9e-126	98.13	Photosystem II CP47 reaction center protein OS=Buxus microphylla OX=153571 GN=ps...	[more]
A7Y3H4	2.9e-126	98.13	Photosystem II CP47 reaction center protein OS=Ipomoea purpurea OX=4121 GN=psbB ...	[more]

BLAST of CcUC03G054290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0ERV3	1.9e-125	100.00	Photosystem II CP47 reaction center protein OS=Trichosanthes kirilowii OX=3677 G...	[more]
G3ETS3	1.9e-125	100.00	Photosystem II CP47 reaction center protein OS=Cucumis melo subsp. melo OX=41267...	[more]
A0A1S4EU40	1.9e-125	100.00	Photosystem II CP47 reaction center protein OS=Cucumis melo OX=3656 GN=psbB PE=3...	[more]
A0A249RZY7	1.9e-125	100.00	Photosystem II CP47 reaction center protein OS=Cucumis melo var. cantalupensis O...	[more]
A0A1P8LE33	1.9e-125	100.00	Photosystem II CP47 reaction center protein OS=Citrullus mucosospermus OX=519315...	[more]

BLAST of CcUC03G054290 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00680.1	1.3e-126	97.20	photosystem II reaction center protein B	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 1..215 e-value: 3.5E-108 score: 362.5
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..215
None	No IPR available	PANTHER	PTHR33180:SF14	PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN	coord: 1..215
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 1..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC03G054290.1	CcUC03G054290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity