Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAGGATTCATTCAAACCCGATGCCATGCAAAGCCACACAAATAACAACCAAACACTGGCCCAGAAACAAGGAGTAATCATCACTGTCTACGTTGAATCTCCAAAATTACAAAACAATAACTCCAATAAAACCTCCATTATTCCCCACAACAACATCAATCCAAACGCTACCCTTCCCCAAACCCACAATTCCAAAGGCTACGATCGTCGAGCTCAGCTTCTCGCCTACTCTCGCCACCTCAGAAATGTCGATTCCTCTCTCTCCCAATCGCCCAAACCCAAATCCAAGGCAACTTTTTCCTTTACTCTTTTGTTCTTTTTTGTCTTGTGATTAGTGAAATTTTAGAATGAAAGAAAAAAATTGAATCGTCTGTTGCTTGCTGACAGAAATGGAAATGGAAGCTCCGACTGGAGGCACCGGGGCGGCTGCCGTCGAGACGGGCAATGCAGCGGTGGAAATATGAACGTGTTGGGATGATGAGAGAAGAGAGAAGAGAGGTGGTGGATCAGCCATGCCGGCCCAAGTGCTTGGGTGGAAGAAGCAACAAGAAAAGCACTGGCAAATCGAGTTCTTCCATATTTGTAAAATTCTAATTGCATTCAATATGATTCTATATGAATACCCATTTGAACCTTTTTAATTACATATTCTTTGTTAGTATGGTGATTAATGTGTGTCCTGTTTTCAGAGGAAATTGAAGAGTTTGTTGGGAGAATTATCAAAGGGCTTCAAACACTAGTGGGTGAGATCATCTCATCAGATCCGCGA
mRNA sequence
AAAAAAAGGATTCATTCAAACCCGATGCCATGCAAAGCCACACAAATAACAACCAAACACTGGCCCAGAAACAAGGAGTAATCATCACTGTCTACGTTGAATCTCCAAAATTACAAAACAATAACTCCAATAAAACCTCCATTATTCCCCACAACAACATCAATCCAAACGCTACCCTTCCCCAAACCCACAATTCCAAAGGCTACGATCGTCGAGCTCAGCTTCTCGCCTACTCTCGCCACCTCAGAAATGTCGATTCCTCTCTCTCCCAATCGCCCAAACCCAAATCCAAGGCAACTTTTTCCTTTACTCTTTTGTTCTTTTTTAAATGGAAATGGAAGCTCCGACTGGAGGCACCGGGGCGGCTGCCGTCGAGACGGGCAATGCAGCGGTGGAAATATGAACGTGTTGGGATGATGAGAGAAGAGAGAAGAGAGGTGGTGGATCAGCCATGCCGGCCCAAGTGCTTGGGTGGAAGAAGCAACAAGAAAAGCACTGGCAAATCGAAGGAAATTGAAGAGTTTGTTGGGAGAATTATCAAAGGGCTTCAAACACTAGTGGGTGAGATCATCTCATCAGATCCGCGA
Coding sequence (CDS)
ATGCAAAGCCACACAAATAACAACCAAACACTGGCCCAGAAACAAGGAGTAATCATCACTGTCTACGTTGAATCTCCAAAATTACAAAACAATAACTCCAATAAAACCTCCATTATTCCCCACAACAACATCAATCCAAACGCTACCCTTCCCCAAACCCACAATTCCAAAGGCTACGATCGTCGAGCTCAGCTTCTCGCCTACTCTCGCCACCTCAGAAATGTCGATTCCTCTCTCTCCCAATCGCCCAAACCCAAATCCAAGGCAACTTTTTCCTTTACTCTTTTGTTCTTTTTTAAATGGAAATGGAAGCTCCGACTGGAGGCACCGGGGCGGCTGCCGTCGAGACGGGCAATGCAGCGGTGGAAATATGAACGTGTTGGGATGATGAGAGAAGAGAGAAGAGAGGTGGTGGATCAGCCATGCCGGCCCAAGTGCTTGGGTGGAAGAAGCAACAAGAAAAGCACTGGCAAATCGAAGGAAATTGAAGAGTTTGTTGGGAGAATTATCAAAGGGCTTCAAACACTAGTGGGTGAGATCATCTCATCAGATCCGCGA
Protein sequence
MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKGYDRRAQLLAYSRHLRNVDSSLSQSPKPKSKATFSFTLLFFFKWKWKLRLEAPGRLPSRRAMQRWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSKEIEEFVGRIIKGLQTLVGEIISSDPR
Homology
BLAST of CcUC03G051580 vs. NCBI nr
Match:
XP_008460454.1 (PREDICTED: uncharacterized protein LOC103499268 [Cucumis melo])
HSP 1 Score: 229.9 bits (585), Expect = 1.7e-56
Identity = 127/185 (68.65%), Postives = 144/185 (77.84%), Query Frame = 0
Query: 1 MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNN---INPNATLPQTHNSK 60
MQSHTNN QTL +KQ VIITVYVESPKLQN+NS+KT IIPHNN INP +LP+T NS
Sbjct: 43 MQSHTNNYQTLPKKQEVIITVYVESPKLQNSNSHKTQIIPHNNNNHINPKPSLPKTPNST 102
Query: 61 GYDRRAQLLAYSRHLRNVDSSLSQSPKPKSKATFSFTLLFFFKWKWKLRLEAP--GRLPS 120
GYDRRAQLLAYSRHLRNV SS +QSP+PKSK KWKWK+R EAP R+PS
Sbjct: 103 GYDRRAQLLAYSRHLRNVHSSNTQSPQPKSK-----------KWKWKVRSEAPTVRRMPS 162
Query: 121 RRAMQRWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSKEIEEFVGRIIKGLQT 180
RRA+QRW+YERVGMMREER EVVDQPCRPKCLGGRSNKKST +S I + L++
Sbjct: 163 RRALQRWRYERVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSG------SSIFRKLKS 210
BLAST of CcUC03G051580 vs. NCBI nr
Match:
XP_038874461.1 (uncharacterized protein LOC120067113 [Benincasa hispida])
HSP 1 Score: 225.3 bits (573), Expect = 4.3e-55
Identity = 123/183 (67.21%), Postives = 143/183 (78.14%), Query Frame = 0
Query: 1 MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNI-NPNATLPQTHNSKGY 60
MQ+HTNNNQT+ QKQGVIITVYVESPKLQ+NNS+K IIPHNNI NPN+ LP+T NS GY
Sbjct: 57 MQTHTNNNQTIPQKQGVIITVYVESPKLQDNNSHKPPIIPHNNINNPNSALPKTPNSTGY 116
Query: 61 DRRAQLLAYSRHLRNVDSSLSQSPKPKSKATFSFTLLFFFKWKWKLRLEAPG--RLPSRR 120
DRRAQLLAYSRHLRN +SSLSQS K +SK KWKW++R EAP R+PSRR
Sbjct: 117 DRRAQLLAYSRHLRNQNSSLSQSSKTESK-----------KWKWRVRSEAPAVRRMPSRR 176
Query: 121 AMQRWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSKEIEEFVGRIIKGLQTLV 180
A+QRW+YERVGMMREE EVVDQPCRPKC GG+S+KKST KS I + L++L+
Sbjct: 177 ALQRWRYERVGMMREETTEVVDQPCRPKCFGGKSSKKSTVKSG------SSIFRKLKSLL 222
BLAST of CcUC03G051580 vs. NCBI nr
Match:
XP_004140323.1 (uncharacterized protein LOC101218772 [Cucumis sativus] >KGN50983.1 hypothetical protein Csa_008362 [Cucumis sativus])
HSP 1 Score: 223.0 bits (567), Expect = 2.1e-54
Identity = 124/185 (67.03%), Postives = 141/185 (76.22%), Query Frame = 0
Query: 1 MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPH---NNINPNATLPQTHNSK 60
MQSHTNN QTL +KQ VIITVYVESPKLQN+N +KT I+PH NN NP +L +T NS
Sbjct: 6 MQSHTNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNNNNNSNPKPSLRKTPNST 65
Query: 61 GYDRRAQLLAYSRHLRNVDSSLSQSPKPKSKATFSFTLLFFFKWKWKLRLEAP--GRLPS 120
GYDRRAQLLAYSRHLRNV SS +QSPKPKSK KWKWK+R EAP R+PS
Sbjct: 66 GYDRRAQLLAYSRHLRNVHSSNTQSPKPKSK-----------KWKWKVRSEAPTVRRMPS 125
Query: 121 RRAMQRWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSKEIEEFVGRIIKGLQT 180
RRA+QRW+YERVGMMREER EVVDQPCRPKCLGGRSNKKST +S I + L++
Sbjct: 126 RRALQRWRYERVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSG------SSIFRKLKS 173
BLAST of CcUC03G051580 vs. NCBI nr
Match:
XP_022990178.1 (uncharacterized protein LOC111487148 [Cucurbita maxima])
HSP 1 Score: 134.4 bits (337), Expect = 9.9e-28
Identity = 82/179 (45.81%), Postives = 114/179 (63.69%), Query Frame = 0
Query: 1 MQSHTNNNQ--TLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKG 60
M+ TN N+ + K+ VIITVYVESP+ Q+N S++ I + N +PNA P+ S+G
Sbjct: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAP-PKATKSRG 60
Query: 61 YDRRAQLLAYSRHLRNVDSSLSQSPKPKSKATFSFTLLFFFKWKWKLRLEAPGRLPSRRA 120
YDRRA+LLAYSR LRNVDS+ + PK KS KW+ K A R+PSRR
Sbjct: 61 YDRRAELLAYSRELRNVDSATTHLPKTKS------------KWRVKSETAAVRRIPSRRG 120
Query: 121 MQRWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGK-----SKEIEEFVGRIIKG 173
+++ +YERVGMMREER EVV+Q C PKC G +K+S+G+ ++++ +G + KG
Sbjct: 121 LRQGRYERVGMMREERTEVVEQRCLPKCFNG-DDKRSSGRLGSSILRKLKSLMGGLSKG 165
BLAST of CcUC03G051580 vs. NCBI nr
Match:
XP_022962296.1 (uncharacterized protein LOC111462789 [Cucurbita moschata])
HSP 1 Score: 133.3 bits (334), Expect = 2.2e-27
Identity = 84/180 (46.67%), Postives = 113/180 (62.78%), Query Frame = 0
Query: 1 MQSHTNNNQ--TLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKG 60
M+ TN N+ + K+ VIITVYVESP+ Q+N S++ I + N +PNA P+ S+G
Sbjct: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAH-PKAPKSRG 60
Query: 61 YDRRAQLLAYSRHLRNVDSSLSQSPKPKSKATFSFTLLFFFKWKWKLRLEAPGRLPSRRA 120
YDRRA+LLAYSR LRNVDS+ + PK KS KW+ K A RLPSRR
Sbjct: 61 YDRRAELLAYSRELRNVDSATTHLPKTKS------------KWRVKSETAAVRRLPSRRG 120
Query: 121 MQRWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSKEIEEFVGRIIKGLQTLVG 179
+++ +YERVGMMREER EVV+Q C PKC G K+S+G+ I++ L++L+G
Sbjct: 121 LRQGRYERVGMMREERTEVVEQRCLPKCFNG-DYKRSSGR------LGSSILRKLKSLMG 160
BLAST of CcUC03G051580 vs. ExPASy TrEMBL
Match:
A0A1S3CDS3 (uncharacterized protein LOC103499268 OS=Cucumis melo OX=3656 GN=LOC103499268 PE=4 SV=1)
HSP 1 Score: 229.9 bits (585), Expect = 8.4e-57
Identity = 127/185 (68.65%), Postives = 144/185 (77.84%), Query Frame = 0
Query: 1 MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNN---INPNATLPQTHNSK 60
MQSHTNN QTL +KQ VIITVYVESPKLQN+NS+KT IIPHNN INP +LP+T NS
Sbjct: 43 MQSHTNNYQTLPKKQEVIITVYVESPKLQNSNSHKTQIIPHNNNNHINPKPSLPKTPNST 102
Query: 61 GYDRRAQLLAYSRHLRNVDSSLSQSPKPKSKATFSFTLLFFFKWKWKLRLEAP--GRLPS 120
GYDRRAQLLAYSRHLRNV SS +QSP+PKSK KWKWK+R EAP R+PS
Sbjct: 103 GYDRRAQLLAYSRHLRNVHSSNTQSPQPKSK-----------KWKWKVRSEAPTVRRMPS 162
Query: 121 RRAMQRWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSKEIEEFVGRIIKGLQT 180
RRA+QRW+YERVGMMREER EVVDQPCRPKCLGGRSNKKST +S I + L++
Sbjct: 163 RRALQRWRYERVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSG------SSIFRKLKS 210
BLAST of CcUC03G051580 vs. ExPASy TrEMBL
Match:
A0A0A0KN34 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385350 PE=4 SV=1)
HSP 1 Score: 223.0 bits (567), Expect = 1.0e-54
Identity = 124/185 (67.03%), Postives = 141/185 (76.22%), Query Frame = 0
Query: 1 MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPH---NNINPNATLPQTHNSK 60
MQSHTNN QTL +KQ VIITVYVESPKLQN+N +KT I+PH NN NP +L +T NS
Sbjct: 6 MQSHTNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNNNNNSNPKPSLRKTPNST 65
Query: 61 GYDRRAQLLAYSRHLRNVDSSLSQSPKPKSKATFSFTLLFFFKWKWKLRLEAP--GRLPS 120
GYDRRAQLLAYSRHLRNV SS +QSPKPKSK KWKWK+R EAP R+PS
Sbjct: 66 GYDRRAQLLAYSRHLRNVHSSNTQSPKPKSK-----------KWKWKVRSEAPTVRRMPS 125
Query: 121 RRAMQRWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSKEIEEFVGRIIKGLQT 180
RRA+QRW+YERVGMMREER EVVDQPCRPKCLGGRSNKKST +S I + L++
Sbjct: 126 RRALQRWRYERVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSG------SSIFRKLKS 173
BLAST of CcUC03G051580 vs. ExPASy TrEMBL
Match:
A0A6J1JSH9 (uncharacterized protein LOC111487148 OS=Cucurbita maxima OX=3661 GN=LOC111487148 PE=4 SV=1)
HSP 1 Score: 134.4 bits (337), Expect = 4.8e-28
Identity = 82/179 (45.81%), Postives = 114/179 (63.69%), Query Frame = 0
Query: 1 MQSHTNNNQ--TLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKG 60
M+ TN N+ + K+ VIITVYVESP+ Q+N S++ I + N +PNA P+ S+G
Sbjct: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAP-PKATKSRG 60
Query: 61 YDRRAQLLAYSRHLRNVDSSLSQSPKPKSKATFSFTLLFFFKWKWKLRLEAPGRLPSRRA 120
YDRRA+LLAYSR LRNVDS+ + PK KS KW+ K A R+PSRR
Sbjct: 61 YDRRAELLAYSRELRNVDSATTHLPKTKS------------KWRVKSETAAVRRIPSRRG 120
Query: 121 MQRWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGK-----SKEIEEFVGRIIKG 173
+++ +YERVGMMREER EVV+Q C PKC G +K+S+G+ ++++ +G + KG
Sbjct: 121 LRQGRYERVGMMREERTEVVEQRCLPKCFNG-DDKRSSGRLGSSILRKLKSLMGGLSKG 165
BLAST of CcUC03G051580 vs. ExPASy TrEMBL
Match:
A0A6J1HCQ4 (uncharacterized protein LOC111462789 OS=Cucurbita moschata OX=3662 GN=LOC111462789 PE=4 SV=1)
HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 84/180 (46.67%), Postives = 113/180 (62.78%), Query Frame = 0
Query: 1 MQSHTNNNQ--TLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKG 60
M+ TN N+ + K+ VIITVYVESP+ Q+N S++ I + N +PNA P+ S+G
Sbjct: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAH-PKAPKSRG 60
Query: 61 YDRRAQLLAYSRHLRNVDSSLSQSPKPKSKATFSFTLLFFFKWKWKLRLEAPGRLPSRRA 120
YDRRA+LLAYSR LRNVDS+ + PK KS KW+ K A RLPSRR
Sbjct: 61 YDRRAELLAYSRELRNVDSATTHLPKTKS------------KWRVKSETAAVRRLPSRRG 120
Query: 121 MQRWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSKEIEEFVGRIIKGLQTLVG 179
+++ +YERVGMMREER EVV+Q C PKC G K+S+G+ I++ L++L+G
Sbjct: 121 LRQGRYERVGMMREERTEVVEQRCLPKCFNG-DYKRSSGR------LGSSILRKLKSLMG 160
BLAST of CcUC03G051580 vs. ExPASy TrEMBL
Match:
A0A6J1CJQ0 (uncharacterized protein LOC111011926 OS=Momordica charantia OX=3673 GN=LOC111011926 PE=4 SV=1)
HSP 1 Score: 108.2 bits (269), Expect = 3.7e-20
Identity = 77/161 (47.83%), Postives = 91/161 (56.52%), Query Frame = 0
Query: 1 MQSH-TNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKGY 60
M+ H ++ N+T +K GVIITVYVESPK NN+ N INP + +GY
Sbjct: 53 MEGHKSDTNKTNPRKDGVIITVYVESPKSHNNSHQNRDANALNKINPKS------RGRGY 112
Query: 61 DRRAQLLAYSRHLRNVDSSLSQSPKPKSKATFSFTLLFFFKWKWKLRLEAPGRLPSRRAM 120
DRRAQLLAYSR LRN+DS L KPK KWK K+R E
Sbjct: 113 DRRAQLLAYSRDLRNLDSPL----KPK-------------KWKLKVRSET---------- 172
Query: 121 QRWKYERVGMMREERREVVDQPCRPKCLGGRS-NKKSTGKS 160
+YERVGM RE+R EVVDQ CRPKC +S KK+TGKS
Sbjct: 173 ---RYERVGMGREDRAEVVDQRCRPKCFCFQSRTKKATGKS 177
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_008460454.1 | 1.7e-56 | 68.65 | PREDICTED: uncharacterized protein LOC103499268 [Cucumis melo] | [more] |
| XP_038874461.1 | 4.3e-55 | 67.21 | uncharacterized protein LOC120067113 [Benincasa hispida] | [more] |
| XP_004140323.1 | 2.1e-54 | 67.03 | uncharacterized protein LOC101218772 [Cucumis sativus] >KGN50983.1 hypothetical ... | [more] |
| XP_022990178.1 | 9.9e-28 | 45.81 | uncharacterized protein LOC111487148 [Cucurbita maxima] | [more] |
| XP_022962296.1 | 2.2e-27 | 46.67 | uncharacterized protein LOC111462789 [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S3CDS3 | 8.4e-57 | 68.65 | uncharacterized protein LOC103499268 OS=Cucumis melo OX=3656 GN=LOC103499268 PE=... | [more] |
| A0A0A0KN34 | 1.0e-54 | 67.03 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385350 PE=4 SV=1 | [more] |
| A0A6J1JSH9 | 4.8e-28 | 45.81 | uncharacterized protein LOC111487148 OS=Cucurbita maxima OX=3661 GN=LOC111487148... | [more] |
| A0A6J1HCQ4 | 1.1e-27 | 46.67 | uncharacterized protein LOC111462789 OS=Cucurbita moschata OX=3662 GN=LOC1114627... | [more] |
| A0A6J1CJQ0 | 3.7e-20 | 47.83 | uncharacterized protein LOC111011926 OS=Momordica charantia OX=3673 GN=LOC111011... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
