CcUC02G023600 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G023600
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ribonuclease H
Location	CicolChr02: 6543756 .. 6544753 (+)
RNA-Seq Expression	CcUC02G023600
Synteny	CcUC02G023600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTATTACTGGCCCACAATGGTGCATGACTCCATGCAGTATGCAAAGCGATGCGAAGCTTGTCAATTCCATGCAAATTTTATACATCAGCCGCCGGAGCCTCTTCACCCGACAGTAGCTTCATGGCCGTTTGAAGCTTGGGGACTTGATCTAGTAGGACCTATAACACCTAAGTCGTCGAGCAGAAACTCTTATATTCTTGCTGGAACAGATTACTTTTCAAGGTGGGCTGAAGCTGTGCCTTTGAGGGAAGCAAAAAAATACAAGAGATCGTAAGTTTTGTTCGTACGCACATCATTGAATACGGGATCCCTCATCGTATTGTCACAGATAATGGAAGACAGTTTGTCAACAGTGTGATAGACAAGTTGTGCGAGAAGTTTAAATTTAAGCAGTACAAGTCTTTTATGTACAATGCCGCAGCGAATGGACTGGCAGAAGCATTCAATAAGACTTTATGTAATCTGCTAAAAAAGGTAGTCTATAAAACAAAAAGAGATTGGCAGGAAAAGATCGGGGAAGTCCTATGGGCTTATCGAACTACCCATCGCACTCCCACAGGAGTCACACCATACTCTCTGGTTTATGGAGTAGAAGCCGTTCTCCCATTAGAGAGGAAAATACCATGGCTGAGAATGACGATTCAAGAAGGACTAACTACTGAAGACAATGCCCAATTACGTCTTCAAGAGCTAGAAGCACTTGACGAGAAGAGACTCGAGACTCAACAGGCATTGAAATGTTATCAAGCACGAATGTCTAAAGCTTTCGACAAACATGTGAAGCCTCGATCGTTTCAGATTGGCGATTTAGTACTTGCTGTAAGAAGACCTATTATCACAACGAGACATACAGGGAATAAGTTCACACATAAATGGGATGGACCTTATGTTGTTAAAGAAGTCTATACAAACAGAGCATACAAGATCGTTGACCAAGATGGATTAAGAATCGGCCCAATCAATGGCAAGTTCCTTAAAAGATTTTATGCGTAA

mRNA sequence

ATGGGCTATTACTGGCCCACAATGGTGCATGACTCCATGCAGTATGCAAAGCGATGCGAAGCTTGTCAATTCCATGCAAATTTTATACATCAGCCGCCGGAGCCTCTTCACCCGACAGTAGCTTCATGGCCGTTTGAAGCTTGGGGACTTGATAATGGAAGACAGTTTGTCAACAGTGTGATAGACAAGTTGTGCGAGAAGTTTAAATTTAAGCAGTACAAGTCTTTTATGTACAATGCCGCAGCGAATGGACTGGCAGAAGCATTCAATAAGACTTTATGTAATCTGCTAAAAAAGGTAGTCTATAAAACAAAAAGAGATTGGCAGGAAAAGATCGGGGAAGTCCTATGGGCTTATCGAACTACCCATCGCACTCCCACAGGAGTCACACCATACTCTCTGGTTTATGGAGTAGAAGCCGTTCTCCCATTAGAGAGGAAAATACCATGGCTGAGAATGACGATTCAAGAAGGACTAACTACTGAAGACAATGCCCAATTACGTCTTCAAGAGCTAGAAGCACTTGACGAGAAGAGACTCGAGACTCAACAGGCATTGAAATGTTATCAAGCACGAATGTCTAAAGCTTTCGACAAACATGTGAAGCCTCGATCGTTTCAGATTGGCGATTTAGTACTTGCTGTAAGAAGACCTATTATCACAACGAGACATACAGGGAATAAGTTCACACATAAATGGGATGGACCTTATGTTGTTAAAGAAGTCTATACAAACAGAGCATACAAGATCGTTGACCAAGATGGATTAAGAATCGGCCCAATCAATGGCAAGTTCCTTAAAAGATTTTATGCGTAA

Coding sequence (CDS)

ATGGGCTATTACTGGCCCACAATGGTGCATGACTCCATGCAGTATGCAAAGCGATGCGAAGCTTGTCAATTCCATGCAAATTTTATACATCAGCCGCCGGAGCCTCTTCACCCGACAGTAGCTTCATGGCCGTTTGAAGCTTGGGGACTTGATAATGGAAGACAGTTTGTCAACAGTGTGATAGACAAGTTGTGCGAGAAGTTTAAATTTAAGCAGTACAAGTCTTTTATGTACAATGCCGCAGCGAATGGACTGGCAGAAGCATTCAATAAGACTTTATGTAATCTGCTAAAAAAGGTAGTCTATAAAACAAAAAGAGATTGGCAGGAAAAGATCGGGGAAGTCCTATGGGCTTATCGAACTACCCATCGCACTCCCACAGGAGTCACACCATACTCTCTGGTTTATGGAGTAGAAGCCGTTCTCCCATTAGAGAGGAAAATACCATGGCTGAGAATGACGATTCAAGAAGGACTAACTACTGAAGACAATGCCCAATTACGTCTTCAAGAGCTAGAAGCACTTGACGAGAAGAGACTCGAGACTCAACAGGCATTGAAATGTTATCAAGCACGAATGTCTAAAGCTTTCGACAAACATGTGAAGCCTCGATCGTTTCAGATTGGCGATTTAGTACTTGCTGTAAGAAGACCTATTATCACAACGAGACATACAGGGAATAAGTTCACACATAAATGGGATGGACCTTATGTTGTTAAAGAAGTCTATACAAACAGAGCATACAAGATCGTTGACCAAGATGGATTAAGAATCGGCCCAATCAATGGCAAGTTCCTTAAAAGATTTTATGCGTAA

Protein sequence

MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPEPLHPTVASWPFEAWGLDNGRQFVNSVIDKLCEKFKFKQYKSFMYNAAANGLAEAFNKTLCNLLKKVVYKTKRDWQEKIGEVLWAYRTTHRTPTGVTPYSLVYGVEAVLPLERKIPWLRMTIQEGLTTEDNAQLRLQELEALDEKRLETQQALKCYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTHKWDGPYVVKEVYTNRAYKIVDQDGLRIGPINGKFLKRFYA

Homology

[Close]

BLAST of CcUC02G023600 vs. NCBI nr
Match: TYK18071.1 (uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa])

HSP 1 Score: 490.0 bits (1260), Expect = 1.4e-134
Identity = 240/332 (72.29%), Postives = 258/332 (77.71%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPEPLHPTVASWPFEAWGL---------- 60
            MGYYWPTM+HDSM +AK CEACQFHANFIHQPPEPLHPT+ASWPFEAWGL          
Sbjct: 1987 MGYYWPTMIHDSMHFAKHCEACQFHANFIHQPPEPLHPTIASWPFEAWGLDLVGPITPKS 2046

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNGRQF N+
Sbjct: 2047 TAGHSYILAGTDYFSKWAEAVPLREAKKENIVNFVQTHIIYRYGIPHRIVTDNGRQFANT 2106

Query: 121  VIDKLCEKFKFKQYKSFMYNAAANGLAEAFNKTLCNLLKKVVYKTKRDWQEKIGEVLWAY 180
            ++DKLCEKF FKQ+KS MYNAAANGLAEAFNKTLC+LLKKVV KTKRDWQEKIGE LWAY
Sbjct: 2107 LMDKLCEKFNFKQFKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAY 2166

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLERKIPWLRMTIQEGLTTEDNAQLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLER+IP LRM IQEGLTTEDNA+LRLQELEALDEKR
Sbjct: 2167 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAIQEGLTTEDNARLRLQELEALDEKR 2226

Query: 241  LETQQALKCYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTHKWDGPYVV 272
            LE QQAL+CYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFT KWDGPY+V
Sbjct: 2227 LEAQQALECYQARMSKAFDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2286

[Close]

BLAST of CcUC02G023600 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 489.6 bits (1259), Expect = 1.8e-134
Identity = 240/332 (72.29%), Postives = 256/332 (77.11%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPEPLHPTVASWPFEAWGL---------- 60
            MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPPEPLHPTVASWPFEAWGL          
Sbjct: 2100 MGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKS 2159

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNG+QF NS
Sbjct: 2160 SAGHSYILAATDYFSKWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNS 2219

Query: 121  VIDKLCEKFKFKQYKSFMYNAAANGLAEAFNKTLCNLLKKVVYKTKRDWQEKIGEVLWAY 180
            ++DKLCEKFKFKQYKS MYNAAANGLAEAFNKTLCNLLKK+V K+KRDWQEKIGE LWAY
Sbjct: 2220 MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAY 2279

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLERKIPWLRMTIQEGLTTEDNAQLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLER+IP LRM +QEGLTTEDN +LRLQELEALDEKR
Sbjct: 2280 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKR 2339

Query: 241  LETQQALKCYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTHKWDGPYVV 272
            LE QQAL+CYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFT KWDGPY+V
Sbjct: 2340 LEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2399

[Close]

BLAST of CcUC02G023600 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 489.6 bits (1259), Expect = 1.8e-134
Identity = 240/332 (72.29%), Postives = 256/332 (77.11%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPEPLHPTVASWPFEAWGL---------- 60
            MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPPEPLHPTVASWPFEAWGL          
Sbjct: 2100 MGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKS 2159

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNG+QF NS
Sbjct: 2160 SAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNS 2219

Query: 121  VIDKLCEKFKFKQYKSFMYNAAANGLAEAFNKTLCNLLKKVVYKTKRDWQEKIGEVLWAY 180
            ++DKLCEKFKFKQYKS MYNAAANGLAEAFNKTLCNLLKK+V K+KRDWQEKIGE LWAY
Sbjct: 2220 MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAY 2279

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLERKIPWLRMTIQEGLTTEDNAQLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLER+IP LRM +QEGLTTEDN +LRLQELEALDEKR
Sbjct: 2280 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKR 2339

Query: 241  LETQQALKCYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTHKWDGPYVV 272
            LE QQAL+CYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFT KWDGPY+V
Sbjct: 2340 LEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2399

[Close]

BLAST of CcUC02G023600 vs. NCBI nr
Match: XP_031737372.1 (uncharacterized protein LOC116402244 [Cucumis sativus])

HSP 1 Score: 489.6 bits (1259), Expect = 1.8e-134
Identity = 240/332 (72.29%), Postives = 256/332 (77.11%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPEPLHPTVASWPFEAWGL---------- 60
            MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPPEPLHPTVASWPFEAWGL          
Sbjct: 1475 MGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKS 1534

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNG+QF NS
Sbjct: 1535 SAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNS 1594

Query: 121  VIDKLCEKFKFKQYKSFMYNAAANGLAEAFNKTLCNLLKKVVYKTKRDWQEKIGEVLWAY 180
            ++DKLCEKFKFKQYKS MYNAAANGLAEAFNKTLCNLLKK+V K+KRDWQEKIGE LWAY
Sbjct: 1595 MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAY 1654

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLERKIPWLRMTIQEGLTTEDNAQLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLER+IP LRM +QEGLTTEDN +LRLQELEALDEKR
Sbjct: 1655 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKR 1714

Query: 241  LETQQALKCYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTHKWDGPYVV 272
            LE QQAL+CYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFT KWDGPY+V
Sbjct: 1715 LEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 1774

[Close]

BLAST of CcUC02G023600 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 489.6 bits (1259), Expect = 1.8e-134
Identity = 240/332 (72.29%), Postives = 256/332 (77.11%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPEPLHPTVASWPFEAWGL---------- 60
            MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPPEPLHPTVASWPFEAWGL          
Sbjct: 1959 MGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKS 2018

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNG+QF NS
Sbjct: 2019 SAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNS 2078

Query: 121  VIDKLCEKFKFKQYKSFMYNAAANGLAEAFNKTLCNLLKKVVYKTKRDWQEKIGEVLWAY 180
            ++DKLCEKFKFKQYKS MYNAAANGLAEAFNKTLCNLLKK+V K+KRDWQEKIGE LWAY
Sbjct: 2079 MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAY 2138

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLERKIPWLRMTIQEGLTTEDNAQLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLER+IP LRM +QEGLTTEDN +LRLQELEALDEKR
Sbjct: 2139 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKR 2198

Query: 241  LETQQALKCYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTHKWDGPYVV 272
            LE QQAL+CYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFT KWDGPY+V
Sbjct: 2199 LEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2258

[Close]

BLAST of CcUC02G023600 vs. ExPASy Swiss-Prot
Match: A4FUB7 (Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus OX=9913 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-06
Identity = 56/234 (23.93%), Postives = 92/234 (39.32%), Query Frame = 0


Query: 50  LDNGRQFVNSVIDKLCEKFKFKQYKSFMYNAAANGLAEAFNKTLCNLLKKVVYKTKRDWQ 109
           +D   +F++ +  +LCE F  KQ      +   N  AE+   T+   L K       DW 
Sbjct: 182 MDQRDEFIHQINVELCELFGTKQIVISHASQTINP-AESTPSTIKTFLSKHCVDYPNDWD 241

Query: 110 EKIGEVLWAYRTTHRTPTGVTPYSLVYGVEAVLPLERKIPWLRMTIQEGLTTEDNAQLRL 169
           + +  V +A+  TH  PT  TPY  ++     +P    I  +           DN  +  
Sbjct: 242 DHLPAVSFAFNVTHLEPTKNTPYFQMFNRNPYMPESSDIREV---------DGDNTSMFA 301

Query: 170 QELEALDE--KRLETQ-------QALKCYQARMSKAF----DKHVKPRSFQIGDLVLAVR 229
           + L+A+ E  K +E +       +   C++   SK       K   P   ++G  VL  R
Sbjct: 302 KILDAIKEADKIMENKTTSVGQMENNNCHELNKSKIIVKKKPKQQNPFHLKVGHEVLRQR 361

Query: 230 RPIITTRHTGNKFTHKWDGPYVVKEVYTNRAYKIVDQDGLRI-GPINGKFLKRF 270
           +          +F  +W GP V+  +  N    + D  G R+  PI    LK +
Sbjct: 362 K----NWWKDGRFRSEWVGPCVIDYITENGGAVLRDSSGARLKRPIKMSHLKPY 401

[Close]

BLAST of CcUC02G023600 vs. ExPASy TrEMBL
Match: A0A5D3D1E5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004020 PE=4 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 6.6e-135
Identity = 240/332 (72.29%), Postives = 258/332 (77.71%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPEPLHPTVASWPFEAWGL---------- 60
            MGYYWPTM+HDSM +AK CEACQFHANFIHQPPEPLHPT+ASWPFEAWGL          
Sbjct: 1987 MGYYWPTMIHDSMHFAKHCEACQFHANFIHQPPEPLHPTIASWPFEAWGLDLVGPITPKS 2046

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNGRQF N+
Sbjct: 2047 TAGHSYILAGTDYFSKWAEAVPLREAKKENIVNFVQTHIIYRYGIPHRIVTDNGRQFANT 2106

Query: 121  VIDKLCEKFKFKQYKSFMYNAAANGLAEAFNKTLCNLLKKVVYKTKRDWQEKIGEVLWAY 180
            ++DKLCEKF FKQ+KS MYNAAANGLAEAFNKTLC+LLKKVV KTKRDWQEKIGE LWAY
Sbjct: 2107 LMDKLCEKFNFKQFKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAY 2166

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLERKIPWLRMTIQEGLTTEDNAQLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLER+IP LRM IQEGLTTEDNA+LRLQELEALDEKR
Sbjct: 2167 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAIQEGLTTEDNARLRLQELEALDEKR 2226

Query: 241  LETQQALKCYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTHKWDGPYVV 272
            LE QQAL+CYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFT KWDGPY+V
Sbjct: 2227 LEAQQALECYQARMSKAFDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2286

[Close]

BLAST of CcUC02G023600 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 1.1e-134
Identity = 239/332 (71.99%), Postives = 258/332 (77.71%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPEPLHPTVASWPFEAWGL---------- 60
            MGYYWPTM+HDSM +AK CEACQFHANFIHQPPEPLHPT+ASWPFEAWGL          
Sbjct: 2057 MGYYWPTMIHDSMHFAKHCEACQFHANFIHQPPEPLHPTIASWPFEAWGLDLVGPITPKS 2116

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNGRQF N+
Sbjct: 2117 TAGHSYILAGTDYFSKWAEAVPLREAKKENIVNFVQTHIIYRYGIPHRIVTDNGRQFANT 2176

Query: 121  VIDKLCEKFKFKQYKSFMYNAAANGLAEAFNKTLCNLLKKVVYKTKRDWQEKIGEVLWAY 180
            ++DKLCEKF FKQ+KS MYNAAANGLAEAFNKTLC+LLKKVV KTKRDWQEKIGE LWAY
Sbjct: 2177 LMDKLCEKFNFKQFKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAY 2236

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLERKIPWLRMTIQEGLTTEDNAQLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLER+IP LRM IQEGLTTEDNA+LRL+ELEALDEKR
Sbjct: 2237 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAIQEGLTTEDNARLRLEELEALDEKR 2296

Query: 241  LETQQALKCYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTHKWDGPYVV 272
            LE QQAL+CYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFT KWDGPY+V
Sbjct: 2297 LEAQQALECYQARMSKAFDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2356

[Close]

BLAST of CcUC02G023600 vs. ExPASy TrEMBL
Match: A0A5D3C379 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002940 PE=4 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 1.2e-133
Identity = 235/305 (77.05%), Postives = 251/305 (82.30%), Query Frame = 0


Query: 1   MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPEPLHPTVASWPFEAWGL---------- 60
           MGYYWP MV DSM YAK+CEACQ+HANFIHQPPEPLHPTVASWPFEAWGL          
Sbjct: 1   MGYYWPKMVQDSMDYAKKCEACQYHANFIHQPPEPLHPTVASWPFEAWGLDLVIPLREAK 60

Query: 61  ------------------------DNGRQFVNSVIDKLCEKFKFKQYKSFMYNAAANGLA 120
                                   DNGRQF NS+IDKLCEKFKFKQYKS MYNAAANGLA
Sbjct: 61  KENVVNFIRTHIIYRYGISHKIVTDNGRQFSNSMIDKLCEKFKFKQYKSSMYNAAANGLA 120

Query: 121 EAFNKTLCNLLKKVVYKTKRDWQEKIGEVLWAYRTTHRTPTGVTPYSLVYGVEAVLPLER 180
           EAFNKTLCNLLKK+V K+KRDWQ++IGE LW YRTTHRTP GVTPYSLVYGVE VLPLER
Sbjct: 121 EAFNKTLCNLLKKIVSKSKRDWQKRIGEALWTYRTTHRTPIGVTPYSLVYGVEVVLPLER 180

Query: 181 KIPWLRMTIQEGLTTEDNAQLRLQELEALDEKRLETQQALKCYQARMSKAFDKHVKPRSF 240
           +IP LRM +QEGLTTEDN +LRLQELEALDEKRLE QQAL+CYQARMSKAF KHVKPRSF
Sbjct: 181 EIPSLRMAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFHKHVKPRSF 240

Query: 241 QIGDLVLAVRRPIITTRHTGNKFTHKWDGPYVVKEVYTNRAYKIVDQDGLRIGPINGKFL 272
           Q+GDLVLAVRRPIITTRHTGNKFT KWDG Y+VKEVYTN AYKIV++DG +IGPINGKFL
Sbjct: 241 QVGDLVLAVRRPIITTRHTGNKFTPKWDGLYIVKEVYTNGAYKIVERDGSKIGPINGKFL 300

[Close]

BLAST of CcUC02G023600 vs. ExPASy TrEMBL
Match: A0A5D3BTY1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 PE=4 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.6e-133
Identity = 238/332 (71.69%), Postives = 257/332 (77.41%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPEPLHPTVASWPFEAWGL---------- 60
            MGYYWPTM+HDSM +AK CEACQFHANFIHQPPEPLHPT+ASWPFE WGL          
Sbjct: 1411 MGYYWPTMIHDSMHFAKYCEACQFHANFIHQPPEPLHPTIASWPFEVWGLDLVGPITPKS 1470

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNGRQF N+
Sbjct: 1471 SAGHSYILARTDYFSRWAEAVPLREAKKENIVNFVQTYIIYRYGIPHRIVTDNGRQFANT 1530

Query: 121  VIDKLCEKFKFKQYKSFMYNAAANGLAEAFNKTLCNLLKKVVYKTKRDWQEKIGEVLWAY 180
            ++DKLCEKF FKQYKS MYNAAANGLAEAFNKTLC+LLKKVV KTKRDWQEKIGE LWAY
Sbjct: 1531 LMDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAY 1590

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLERKIPWLRMTIQEGLTTEDNAQLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLE++IP LRM+IQEGLTT+DNA+L LQELEALDEKR
Sbjct: 1591 RTTHRTPTGVTPYSLVYGVEAVLPLEKEIPSLRMSIQEGLTTKDNARLCLQELEALDEKR 1650

Query: 241  LETQQALKCYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTHKWDGPYVV 272
            LE QQAL+CYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFT KWDGPY+V
Sbjct: 1651 LEAQQALECYQARMSKAFDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 1710

[Close]

BLAST of CcUC02G023600 vs. ExPASy TrEMBL
Match: A0A5A7UZS6 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004880 PE=4 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.6e-133
Identity = 238/332 (71.69%), Postives = 257/332 (77.41%), Query Frame = 0


Query: 1   MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPEPLHPTVASWPFEAWGL---------- 60
           MGYYWPTM+HDSM +AK CEACQFHANFIHQPPEPLHPT+ASWPFE WGL          
Sbjct: 306 MGYYWPTMIHDSMHFAKYCEACQFHANFIHQPPEPLHPTIASWPFEVWGLDLVGPITPKS 365

Query: 61  ---------------------------------------------------DNGRQFVNS 120
                                                              DNGRQF N+
Sbjct: 366 SAGHSYILARTDYFSRWAEAVPLREAKKENIVNFVQTYIIYRYGIPHRIVTDNGRQFANT 425

Query: 121 VIDKLCEKFKFKQYKSFMYNAAANGLAEAFNKTLCNLLKKVVYKTKRDWQEKIGEVLWAY 180
           ++DKLCEKF FKQYKS MYNAAANGLAEAFNKTLC+LLKKVV KTKRDWQEKIGE LWAY
Sbjct: 426 LMDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAY 485

Query: 181 RTTHRTPTGVTPYSLVYGVEAVLPLERKIPWLRMTIQEGLTTEDNAQLRLQELEALDEKR 240
           RTTHRTPTGVTPYSLVYGVEAVLPLE++IP LRM+IQEGLTT+DNA+L LQELEALDEKR
Sbjct: 486 RTTHRTPTGVTPYSLVYGVEAVLPLEKEIPSLRMSIQEGLTTKDNARLCLQELEALDEKR 545

Query: 241 LETQQALKCYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTHKWDGPYVV 272
           LE QQAL+CYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFT KWDGPY+V
Sbjct: 546 LEAQQALECYQARMSKAFDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 605

The following BLAST results are available for this feature:

BLAST of CcUC02G023600 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18071.1	1.4e-134	72.29	uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]	[more]
XP_031739134.1	1.8e-134	72.29	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	1.8e-134	72.29	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031737372.1	1.8e-134	72.29	uncharacterized protein LOC116402244 [Cucumis sativus]	[more]
XP_031742199.1	1.8e-134	72.29	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]

BLAST of CcUC02G023600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FUB7	2.5e-06	23.93	Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus OX=9913 GN=GIN1 PE=...	[more]

BLAST of CcUC02G023600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D1E5	6.6e-135	72.29	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00402...	[more]
A0A5A7TZU9	1.1e-134	71.99	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5D3C379	1.2e-133	77.05	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BTY1	1.6e-133	71.69	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 ...	[more]
A0A5A7UZS6	1.6e-133	71.69	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004880...	[more]

BLAST of CcUC02G023600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 172..192
None	No IPR available	PANTHER	PTHR24559:SF342	SUBFAMILY NOT NAMED	coord: 51..225
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 51..225
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 17..189 e-value: 6.8E-26 score: 92.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 51..139 score: 10.574646
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 41..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G023600.1	CcUC02G023600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding