CcUC01G000820 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G000820
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Pyruvate kinase
Location	CicolChr01: 535406 .. 536271 (+)
RNA-Seq Expression	CcUC01G000820
Synteny	CcUC01G000820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGCTGTAGCCATTGTCAAACGCCTTGCTCCATAACATAACTCCTCCATAGTTGGAAGAAGTTTTGATGGTCGGAAGAACTTGAGAAATAAGCACATCCGCCGGAATAAAGCCGCCGCTCGGCGCCGCCTCAGGGGCCGCCGGCAGCCCCATGAAGAGACTGGCAGCTGGAAACGTCGTCCACTGACTCCAAGAATTCAGGAGATTGTCGGCGTTATCTGCAAACATGCATGGCGGGTTGTTGTAGAATTGAACCCAAACGAAATCAAACAAACCCGTTTTAATGGCCGCGTCTAGGTGTGCGTCGGGGATTGGACACTGCGGCGCGGCGGAGAGAAGGACTTGACCGAAGCCCTTCAGCTGCCGAGCTAGTTCGTCCCACCACTGCCCTGAGCCAGATTCGATATCGAAATCAATGCCGTCCAAAACGGCGTCGCCGAGTGGCCTTGAACTCGACTGCCCGCCGAGGAAGTTGTTCCAAAGGAAGTTTGCGACGTCTCTTGCATCGTCGGTGGAGGAGAGTGAATAGCTCCCTGCGCCGCCGCCGATAGAGAGGAGGACTTTGATGCCTTGACTTTTGCAAGAATTTATTTCGTCGCTCAAAAAAGCGCAACCGTTGTTGTCAGGGTTGCAGTGACCGGCAAGGTTGAGGACCGGGGTTTGACCATTGCCGAAGGAGGAGAGAAATGCTATGTTGACGAACTTGTAGTTTCCGGTGGCACAGGTGGAGGCAAGAGAGCCTTCGTTGCCGTTTTGGCCCCAGTAGATGGCGATTCCGGCCGCATCGGAAGATCGAAATATGGAGGAGAGGAGGAAGATGATAGAAAGAGTTGTAGTTATTTTGTGGGAAGCCATTTCTAA

mRNA sequence

ATGGCAAGTTTTGATGGTCGGAAGAACTTGAGAAATAAGCACATCCGCCGGAATAAAGCCGCCGCTCGGCGCCGCCTCAGGGGCCGCCGGCAGCCCCATGAAGAGACTGGCAGCTGGAAACGTCGTCCACTGACTCCAAGAATTCAGGAGATTGTCGGCGTTATCTGCAAACATGCATGGCGGGTTGTTGTAGAATTGAACCCAAACGAAATCAAACAAACCCGTGTGCGTCGGGGATTGGACACTGCGGCGCGGCGGAGAGAAGGACTTGACCGAAGCCCTTCAGCTGCCGAGCTAGTTCGTCCCACCACTGCCCTGAGCCAGATTCGATATCGAAATCAATGCCGTCCAAAACGGCGTCGCCGAGTGGCCTTGAACTCGACTGCCCGCCGAGGAAGTTGTTCCAAAGGAACTCCCTGCGCCGCCGCCGATAGAGAGGAGGACTTTGATGCCTTGACTTTTGCAAGAATTTATTTCGTCGCTCAAAAAAGCGCAACCGTTGTTGTCAGGGTTGCAGTGACCGGCAAGGTTGAGGACCGGGGTTTGACCATTGCCGAAGGAGGAGAGAAATGCTATGTTGACGAACTTGTAGTTTCCGGTGGCACAGGTGGAGGCAAGAGAGCCTTCGTTGCCGTTTTGGCCCCAGTAGATGGCGATTCCGGCCGCATCGGAAGATCGAAATATGGAGGAGAGGAGGAAGATGATAGAAAGAGTTGTAGTTATTTTGTGGGAAGCCATTTCTAA

Coding sequence (CDS)

ATGGCAAGTTTTGATGGTCGGAAGAACTTGAGAAATAAGCACATCCGCCGGAATAAAGCCGCCGCTCGGCGCCGCCTCAGGGGCCGCCGGCAGCCCCATGAAGAGACTGGCAGCTGGAAACGTCGTCCACTGACTCCAAGAATTCAGGAGATTGTCGGCGTTATCTGCAAACATGCATGGCGGGTTGTTGTAGAATTGAACCCAAACGAAATCAAACAAACCCGTGTGCGTCGGGGATTGGACACTGCGGCGCGGCGGAGAGAAGGACTTGACCGAAGCCCTTCAGCTGCCGAGCTAGTTCGTCCCACCACTGCCCTGAGCCAGATTCGATATCGAAATCAATGCCGTCCAAAACGGCGTCGCCGAGTGGCCTTGAACTCGACTGCCCGCCGAGGAAGTTGTTCCAAAGGAACTCCCTGCGCCGCCGCCGATAGAGAGGAGGACTTTGATGCCTTGACTTTTGCAAGAATTTATTTCGTCGCTCAAAAAAGCGCAACCGTTGTTGTCAGGGTTGCAGTGACCGGCAAGGTTGAGGACCGGGGTTTGACCATTGCCGAAGGAGGAGAGAAATGCTATGTTGACGAACTTGTAGTTTCCGGTGGCACAGGTGGAGGCAAGAGAGCCTTCGTTGCCGTTTTGGCCCCAGTAGATGGCGATTCCGGCCGCATCGGAAGATCGAAATATGGAGGAGAGGAGGAAGATGATAGAAAGAGTTGTAGTTATTTTGTGGGAAGCCATTTCTAA

Protein sequence

MASFDGRKNLRNKHIRRNKAAARRRLRGRRQPHEETGSWKRRPLTPRIQEIVGVICKHAWRVVVELNPNEIKQTRVRRGLDTAARRREGLDRSPSAAELVRPTTALSQIRYRNQCRPKRRRRVALNSTARRGSCSKGTPCAAADREEDFDALTFARIYFVAQKSATVVVRVAVTGKVEDRGLTIAEGGEKCYVDELVVSGGTGGGKRAFVAVLAPVDGDSGRIGRSKYGGEEEDDRKSCSYFVGSHF

Homology

[Close]

BLAST of CcUC01G000820 vs. NCBI nr
Match: CAB3474883.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-07
Identity = 43/76 (56.58%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 144 DREEDFDALTFARIYFVAQKSATVVVRVAVTGKVEDRGLTIAEGGEKCYVDELVVSGGTG 203
           D EE  DA   AR+   A   A V  RVAV G+VE R L +AE GE+ YVDELV SGG  
Sbjct: 157 DGEEHLDAHALARLDVRAHARAPVGGRVAVAGEVEHRRLALAERGEERYVDELVESGGAC 216

Query: 204 GGKRAFVAVLAPVDGD 220
             +RA V VLAPVDGD
Sbjct: 217 LFQRALVTVLAPVDGD 232

[Close]

BLAST of CcUC01G000820 vs. NCBI nr
Match: ACN33775.1 (unknown [Zea mays])

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-05
Identity = 79/249 (31.73%), Postives = 107/249 (42.97%), Query Frame = 0


Query: 5   DGRKNLRNKHIRRNKAAARRRLRGRRQPHEETGSWKRRPLTPRIQEI--VGVICKHAWRV 64
           D R++LR++  RR++ AA    RG  +  E       RPL PR+++    G     A RV
Sbjct: 52  DHRQHLRHEVARRHEPAASGLGRG-GEAEEHPPRPDGRPLRPRLRQAAHAGARAVLARRV 111

Query: 65  VVELNPNEIKQTRVRRGLDTAAR----RREGLDRSPSAAELVRPTTALSQIRYRNQCRPK 124
           VVEL+P+ ++Q R  RG     R    RR      P  A    P   L +          
Sbjct: 112 VVELHPHVVEQPRGERGAQRRVRERALRRRRQVHGPPRAPAPAPGVGLEEPGQVVPVHAP 171

Query: 125 RRRRVALNST---------------------ARRGSCSKG------TPCAAADREEDFDA 184
               V +++                       RR +   G         A AD E+D DA
Sbjct: 172 AALDVEVDAVEDGVAEGPGLGPAAAEVVVPEVRRDAPGVGPGREAVAADAPADGEQDLDA 231

Query: 185 LTFARIYFVAQKSATVVVRVAVTGKVEDRGLTIAEGGEKCYVDELVVSGGTGGGKRAFVA 221
              AR+   A   A    RVAV  +V+ R L  AE  E+ +VDE VV+ G G  +R  VA
Sbjct: 232 HALARLDVRAHARAPAARRVAVARQVQRRRLAPAERREEGHVDEPVVARGAGLRQRPLVA 291

[Close]

BLAST of CcUC01G000820 vs. NCBI nr
Match: KZV36454.1 (pyruvate kinase [Dorcoceras hygrometricum])

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-04
Identity = 42/97 (43.30%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 139 PCAAADREEDFDALTFARIY-FVAQKSATVVVRVAVTGKVEDRGLTIAEGGEKCYVDELV 198
           P A+AD EE+ DA   A  Y F  + +     RVAV  +VE  GL  AE  EKC VD   
Sbjct: 523 PDASADGEENPDAPLLAGTYSFADEVAGASDRRVAVASEVESGGLAAAEYVEKCNVDVRE 582

Query: 199 VSGGTGGGKRAFVAVLAPVDGDSGRIGRSKYGGEEED 235
            +GG G  + +F+AVL PV+GD   +G    GG EE+
Sbjct: 583 SAGGAGFCQGSFIAVLTPVNGDPSAVGG---GGVEEE 616

[Close]

BLAST of CcUC01G000820 vs. ExPASy TrEMBL
Match: C0PF09 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.0e-06
Identity = 79/249 (31.73%), Postives = 107/249 (42.97%), Query Frame = 0


Query: 5   DGRKNLRNKHIRRNKAAARRRLRGRRQPHEETGSWKRRPLTPRIQEI--VGVICKHAWRV 64
           D R++LR++  RR++ AA    RG  +  E       RPL PR+++    G     A RV
Sbjct: 52  DHRQHLRHEVARRHEPAASGLGRG-GEAEEHPPRPDGRPLRPRLRQAAHAGARAVLARRV 111

Query: 65  VVELNPNEIKQTRVRRGLDTAAR----RREGLDRSPSAAELVRPTTALSQIRYRNQCRPK 124
           VVEL+P+ ++Q R  RG     R    RR      P  A    P   L +          
Sbjct: 112 VVELHPHVVEQPRGERGAQRRVRERALRRRRQVHGPPRAPAPAPGVGLEEPGQVVPVHAP 171

Query: 125 RRRRVALNST---------------------ARRGSCSKG------TPCAAADREEDFDA 184
               V +++                       RR +   G         A AD E+D DA
Sbjct: 172 AALDVEVDAVEDGVAEGPGLGPAAAEVVVPEVRRDAPGVGPGREAVAADAPADGEQDLDA 231

Query: 185 LTFARIYFVAQKSATVVVRVAVTGKVEDRGLTIAEGGEKCYVDELVVSGGTGGGKRAFVA 221
              AR+   A   A    RVAV  +V+ R L  AE  E+ +VDE VV+ G G  +R  VA
Sbjct: 232 HALARLDVRAHARAPAARRVAVARQVQRRRLAPAERREEGHVDEPVVARGAGLRQRPLVA 291

[Close]

BLAST of CcUC01G000820 vs. ExPASy TrEMBL
Match: A0A2Z7BQ13 (Pyruvate kinase OS=Dorcoceras hygrometricum OX=472368 GN=F511_15959 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.9e-05
Identity = 42/97 (43.30%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 139 PCAAADREEDFDALTFARIY-FVAQKSATVVVRVAVTGKVEDRGLTIAEGGEKCYVDELV 198
           P A+AD EE+ DA   A  Y F  + +     RVAV  +VE  GL  AE  EKC VD   
Sbjct: 523 PDASADGEENPDAPLLAGTYSFADEVAGASDRRVAVASEVESGGLAAAEYVEKCNVDVRE 582

Query: 199 VSGGTGGGKRAFVAVLAPVDGDSGRIGRSKYGGEEED 235
            +GG G  + +F+AVL PV+GD   +G    GG EE+
Sbjct: 583 SAGGAGFCQGSFIAVLTPVNGDPSAVGG---GGVEEE 616

The following BLAST results are available for this feature:

BLAST of CcUC01G000820 vs. NCBI nr


Match Name	E-value	Identity	Description
CAB3474883.1	1.2e-07	56.58	unnamed protein product [Digitaria exilis]	[more]
ACN33775.1	1.9e-05	31.73	unknown [Zea mays]	[more]
KZV36454.1	2.0e-04	43.30	pyruvate kinase [Dorcoceras hygrometricum]	[more]

BLAST of CcUC01G000820 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC01G000820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
C0PF09	9.0e-06	31.73	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]
A0A2Z7BQ13	9.9e-05	43.30	Pyruvate kinase OS=Dorcoceras hygrometricum OX=472368 GN=F511_15959 PE=3 SV=1	[more]

BLAST of CcUC01G000820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G000820.1	CcUC01G000820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding