Carg28298 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28298
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	sigma factor binding protein 2, chloroplastic-like
Location	Carg_Chr03: 2124894 .. 2125406 (+)
RNA-Seq Expression	Carg28298
Synteny	Carg28298

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGCAGCGCCGGCACCGGCACCGGAAACAGCCACAGACTCCTCGACGGCGTCCACCGGCGAAAGCCCACAAAGAAAAACCACATACAACGAACCCAACACAAACAACAAAACCCATCAAATCTGAGAATGGTACATATCCACCCCATGAAGCGTTCAACATCAGCGCATGGAGTTCATAATTGGCTTTGGTTTCGCACAACAACTCACCGCCAAGGACGCACGGACACTTCTTCCAGGACCCTCTACCTTCCCACCCGGCCGCTCCTCTACGGCGACACGGCCGCCGCCTTCCCCGACATCCACAACACCACGGCGGATGCTAATCTGATGAACAATAACAACCCTTCACTTACTGTTGAGATTCCGATGGAGGATGACCCCTTTCTTGGCTCTTTCTATGATGACATTGACGATCTGATTTTCCCCCCTCCGGTGATCGGAAACTACCCTGCGCTGCTTCCGGCGGCGGCGGCAACGGCGGTTTTGTATGAATCTTATGCAAGGTGA

mRNA sequence

ATGGACGGCAGCGCCGGCACCGGCACCGGAAACAGCCACAGACTCCTCGACGGCGTCCACCGGCGAAAGCCCACAAAGAAAAACCACATACAACGAACCCAACACAAACAACAAAACCCATCAAATCTGAGAATGGTACATATCCACCCCATGAAGCGTTCAACATCAGCGCATGGAGTTCATAATTGGCTTTGGTTTCGCACAACAACTCACCGCCAAGGACGCACGGACACTTCTTCCAGGACCCTCTACCTTCCCACCCGGCCGCTCCTCTACGGCGACACGGCCGCCGCCTTCCCCGACATCCACAACACCACGGCGGATGCTAATCTGATGAACAATAACAACCCTTCACTTACTGTTGAGATTCCGATGGAGGATGACCCCTTTCTTGGCTCTTTCTATGATGACATTGACGATCTGATTTTCCCCCCTCCGGTGATCGGAAACTACCCTGCGCTGCTTCCGGCGGCGGCGGCAACGGCGGTTTTGTATGAATCTTATGCAAGGTGA

Coding sequence (CDS)

ATGGACGGCAGCGCCGGCACCGGCACCGGAAACAGCCACAGACTCCTCGACGGCGTCCACCGGCGAAAGCCCACAAAGAAAAACCACATACAACGAACCCAACACAAACAACAAAACCCATCAAATCTGAGAATGGTACATATCCACCCCATGAAGCGTTCAACATCAGCGCATGGAGTTCATAATTGGCTTTGGTTTCGCACAACAACTCACCGCCAAGGACGCACGGACACTTCTTCCAGGACCCTCTACCTTCCCACCCGGCCGCTCCTCTACGGCGACACGGCCGCCGCCTTCCCCGACATCCACAACACCACGGCGGATGCTAATCTGATGAACAATAACAACCCTTCACTTACTGTTGAGATTCCGATGGAGGATGACCCCTTTCTTGGCTCTTTCTATGATGACATTGACGATCTGATTTTCCCCCCTCCGGTGATCGGAAACTACCCTGCGCTGCTTCCGGCGGCGGCGGCAACGGCGGTTTTGTATGAATCTTATGCAAGGTGA

Protein sequence

MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSNLRMVHIHPMKRSTSAHGVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPDIHNTTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR

Homology

[Close]

BLAST of Carg28298 vs. NCBI nr
Match: KAG7033592.1 (hypothetical protein SDJN02_03316, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 348.6 bits (893), Expect = 3.1e-92
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSNLRMVHIHPMKRSTSAHGV 60
           MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSNLRMVHIHPMKRSTSAHGV
Sbjct: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSNLRMVHIHPMKRSTSAHGV 60

Query: 61  HNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPDIHNTTADANLMNNNNPSLT 120
           HNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPDIHNTTADANLMNNNNPSLT
Sbjct: 61  HNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPDIHNTTADANLMNNNNPSLT 120

Query: 121 VEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 171
           VEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Sbjct: 121 VEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 170

[Close]

BLAST of Carg28298 vs. NCBI nr
Match: XP_022932879.1 (sigma factor binding protein 2, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 195.7 bits (496), Expect = 3.3e-46
Identity = 119/172 (69.19%), Postives = 126/172 (73.26%), Query Frame = 0


Query: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAH 60
           MDGSAGTGTGNSHRLLDGVHRRKPTKK        KQ N +  +++V+I +PMK   SA 
Sbjct: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKT-------KQPNKNKPIKVVYISNPMKVQISAS 60

Query: 61  GVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPDIHNTTADANLMNNNNPS 120
           G    L  + T       D S       T P      AAAFPDIHNTTADANLMNNNNPS
Sbjct: 61  GFMA-LVQQLTGQDADFPDPS-------TFPPAAVRDAAAFPDIHNTTADANLMNNNNPS 120

Query: 121 LTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 171
           LTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Sbjct: 121 LTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 157

[Close]

BLAST of Carg28298 vs. NCBI nr
Match: KAG6603312.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.9 bits (494), Expect = 5.7e-46
Identity = 116/172 (67.44%), Postives = 125/172 (72.67%), Query Frame = 0


Query: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAH 60
           MDGSAGTGTGNSHRLLDGVHRRKPTKK        KQ N +  +++V+I +PMK   SA 
Sbjct: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKT-------KQPNKNKPIKVVYISNPMKVQISAS 60

Query: 61  GVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPDIHNTTADANLMNNNNPS 120
           G     +        G+          P  P    D AAAFPDIHNTTADANLMNNNNPS
Sbjct: 61  G-----FMALVQQLTGQDADFPDPSNFP--PAAVRD-AAAFPDIHNTTADANLMNNNNPS 120

Query: 121 LTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 171
           LTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPAL+PAAAATAVLYESYAR
Sbjct: 121 LTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALIPAAAATAVLYESYAR 157

[Close]

BLAST of Carg28298 vs. NCBI nr
Match: XP_022967903.1 (sigma factor binding protein 2, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 184.9 bits (468), Expect = 5.9e-43
Identity = 111/172 (64.53%), Postives = 122/172 (70.93%), Query Frame = 0


Query: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAH 60
           MDGSAGTGTGNSHRLLDGVHRRKPTKK        KQ N +  +++V+I +PMK   SA 
Sbjct: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKT-------KQPNKNKPIKVVYISNPMKVQISAS 60

Query: 61  GVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPDIHNTTADANLMNNNNPS 120
           G       +  T +      SS+              AAAFPDIH+TTADANLM NNNPS
Sbjct: 61  GF--MALVQQLTGQDAEFPDSSKF-----------PPAAAFPDIHDTTADANLMMNNNPS 120

Query: 121 LTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 171
           LTVE PMEDDP LG+FYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Sbjct: 121 LTVEPPMEDDPLLGTFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 152

[Close]

BLAST of Carg28298 vs. NCBI nr
Match: XP_022967902.1 (sigma factor binding protein 2, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 184.9 bits (468), Expect = 5.9e-43
Identity = 111/172 (64.53%), Postives = 122/172 (70.93%), Query Frame = 0


Query: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAH 60
           MDGSAGTGTGNSHRLLDGVHRRKPTKK        KQ N +  +++V+I +PMK   SA 
Sbjct: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKT-------KQPNKNKPIKVVYISNPMKVQISAS 60

Query: 61  GVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPDIHNTTADANLMNNNNPS 120
           G       +  T +      SS+              AAAFPDIH+TTADANLM NNNPS
Sbjct: 61  GF--MALVQQLTGQDAEFPDSSKF-----------PPAAAFPDIHDTTADANLMMNNNPS 120

Query: 121 LTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 171
           LTVE PMEDDP LG+FYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Sbjct: 121 LTVEPPMEDDPLLGTFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 152

[Close]

BLAST of Carg28298 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.6e-46
Identity = 119/172 (69.19%), Postives = 126/172 (73.26%), Query Frame = 0


Query: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAH 60
           MDGSAGTGTGNSHRLLDGVHRRKPTKK        KQ N +  +++V+I +PMK   SA 
Sbjct: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKT-------KQPNKNKPIKVVYISNPMKVQISAS 60

Query: 61  GVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPDIHNTTADANLMNNNNPS 120
           G    L  + T       D S       T P      AAAFPDIHNTTADANLMNNNNPS
Sbjct: 61  GFMA-LVQQLTGQDADFPDPS-------TFPPAAVRDAAAFPDIHNTTADANLMNNNNPS 120

Query: 121 LTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 171
           LTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Sbjct: 121 LTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 157

[Close]

BLAST of Carg28298 vs. ExPASy TrEMBL
Match: A0A6J1HS32 (sigma factor binding protein 2, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467277 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.8e-43
Identity = 111/172 (64.53%), Postives = 122/172 (70.93%), Query Frame = 0


Query: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAH 60
           MDGSAGTGTGNSHRLLDGVHRRKPTKK        KQ N +  +++V+I +PMK   SA 
Sbjct: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKT-------KQPNKNKPIKVVYISNPMKVQISAS 60

Query: 61  GVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPDIHNTTADANLMNNNNPS 120
           G       +  T +      SS+              AAAFPDIH+TTADANLM NNNPS
Sbjct: 61  GF--MALVQQLTGQDAEFPDSSKF-----------PPAAAFPDIHDTTADANLMMNNNPS 120

Query: 121 LTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 171
           LTVE PMEDDP LG+FYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Sbjct: 121 LTVEPPMEDDPLLGTFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 152

[Close]

BLAST of Carg28298 vs. ExPASy TrEMBL
Match: A0A6J1HWH9 (sigma factor binding protein 2, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467277 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.8e-43
Identity = 111/172 (64.53%), Postives = 122/172 (70.93%), Query Frame = 0


Query: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSN-LRMVHI-HPMKRSTSAH 60
           MDGSAGTGTGNSHRLLDGVHRRKPTKK        KQ N +  +++V+I +PMK   SA 
Sbjct: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKT-------KQPNKNKPIKVVYISNPMKVQISAS 60

Query: 61  GVHNWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPDIHNTTADANLMNNNNPS 120
           G       +  T +      SS+              AAAFPDIH+TTADANLM NNNPS
Sbjct: 61  GF--MALVQQLTGQDAEFPDSSKF-----------PPAAAFPDIHDTTADANLMMNNNPS 120

Query: 121 LTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 171
           LTVE PMEDDP LG+FYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Sbjct: 121 LTVEPPMEDDPLLGTFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 152

[Close]

BLAST of Carg28298 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.2e-18
Identity = 76/175 (43.43%), Postives = 96/175 (54.86%), Query Frame = 0


Query: 5   AGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSNLRMVHI-HPMKRSTSAHGVHNW 64
           AGT TG+ HR LD V+RRKPTKK      Q K +    +++V+I +PMK  TSA G    
Sbjct: 3   AGTATGSDHRTLDAVYRRKPTKKT----KQPKNRLKKPIKVVYISNPMKVQTSASG---- 62

Query: 65  LWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPDIHNTTADAN--------LMNNN 124
            +        G+          P  P    D AA+   ++NT +           ++N+N
Sbjct: 63  -FMALVQELTGQDADFPDPSKFP--PSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSN 122

Query: 125 NPSLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 171
           N SL  E+P EDD  LGSFYDD DDLIFP PVIGN+  LLPA  A AV+YES AR
Sbjct: 123 NSSLVDEVPAEDD-ILGSFYDDFDDLIFPSPVIGNFSGLLPAPVA-AVVYESNAR 164

[Close]

BLAST of Carg28298 vs. ExPASy TrEMBL
Match: A0A6J1F0S9 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111438200 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.8e-17
Identity = 75/175 (42.86%), Postives = 94/175 (53.71%), Query Frame = 0


Query: 3   GSAGTGTGNSHRLLDGVHRRKPTKKNHIQRTQHKQQNPSNLRMVHI-HPMKRSTSAHGVH 62
           G  G G  N H  L GV RRKPTKK     T+        +++V+I +PMK  TSA    
Sbjct: 4   GGGGGGNRNDHTSLGGVRRRKPTKK-----TKQPNNKKKPIKVVYISNPMKVKTSASK-- 63

Query: 63  NWLWFRTTTHRQGRTDTSSRTLYLPTRPLLYGDTAAAFPD-IHNTTA-----DANLMNNN 122
               F          D        P++     + A A PD +H+TTA     D+ +MNNN
Sbjct: 64  ----FMALVQELTGQDADFPD---PSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNN 123

Query: 123 NP-SLTVEIPMEDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYA 170
            P +L VE+P E D  +GSFYDD DDLI PPP+IGN+   LPAA A AV+YESYA
Sbjct: 124 IPTTLGVELPAE-DYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYA 163

The following BLAST results are available for this feature:

BLAST of Carg28298 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033592.1	3.1e-92	100.00	hypothetical protein SDJN02_03316, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022932879.1	3.3e-46	69.19	sigma factor binding protein 2, chloroplastic-like [Cucurbita moschata]	[more]
KAG6603312.1	5.7e-46	67.44	Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
XP_022967903.1	5.9e-43	64.53	sigma factor binding protein 2, chloroplastic-like isoform X2 [Cucurbita maxima]	[more]
XP_022967902.1	5.9e-43	64.53	sigma factor binding protein 2, chloroplastic-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg28298 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg28298 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EY87	1.6e-46	69.19	sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HS32	2.8e-43	64.53	sigma factor binding protein 2, chloroplastic-like isoform X1 OS=Cucurbita maxim...	[more]
A0A6J1HWH9	2.8e-43	64.53	sigma factor binding protein 2, chloroplastic-like isoform X2 OS=Cucurbita maxim...	[more]
A0A0A0L3J8	3.2e-18	43.43	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=...	[more]
A0A6J1F0S9	7.8e-17	42.86	sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of Carg28298 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28298-RA	Carg28298-RA	mRNA