Carg27380 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg27380
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmalignant T-cell-amplified sequence 1 homolog
LocationCarg_Chr10: 9286323 .. 9288374 (+)
RNA-Seq ExpressionCarg27380
SyntenyCarg27380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCTCTCGACGTCTGCGTACTCTCTTCCCATTTCCACACCGATCCTCTGGTGGGATCCGAGCAATTGTCTCCTATCGTTCTGGAGTCCTCTTCAAATTCAATCTAACAATCTGTATTTTCTGAAATTTTTATTAGGATTCTCTTCATATAACTCTGCGGCATCATGTTCAAAAAGTGAGTTCTCTCTATATTGCTCGTTATTCGGCTATGATTTCATGTCTTTGCTTGATGATTGTGGAAAATGATATCTAGGTTTTGTTTTTCGGGGATTAAAATATGAGGAAATGGTTTGATTTCTTCACTTTTTGTTACTGGTCTCTGGATTTTGCTCGATTAGTGTCTTCTCTCTCGTTCTACGCTGGGGATTTGTTTGTAGGGTTGATTCTTCTCATAGGAAAAGAGGATTGTTTTGCTTCTGTTTTTCGATTGATTGTTTTGCCCTAGATTTCTACTTGCCGAGAGTCGTTATCGTTGTCGTAATGTGTCATAATGTGCGGAAATAATCATTTGAAACTTCGATATAAGACATAAACTTCATCTTAAAACACTGTCATGAGCTTACTTGTTCGAAAACATCTTTAAACCGACACAACGAAATACTAAATGCAATAAATAAATATTAGAATTAATGCAACTATCCTATGCACGTGTCATGGTTTCGAATTGCGATGTCGTCGTTAGCCGTAGAGGCCTTGCCTTTACTTGAAAATGATTGTTTTGCTTCTATTTTTCGTTTGATTGTTTGCCCTAGATTTCTATTTGTCGAGAGTTGCTATCGTCGTCATAATGTGCAGAAATAATCATTTGAAACTTTGACATAAGACATAAACTTCATCTTAAAACACTGTCATGGACTTACATGTTCGAAAACATCTTTAAAACGACTCAACGAAATACTAAATGAAATAAATAGACATTAGAATTAAAAACATCTTATCCTAACCTAAGACTAAGGAAATAAATGCAACTGCCCTATGCATGTGTCATGGTCTCGAGTTGCGATATCATTGTTACCCGTACAGGGATGCCTTGCCTTTCCCTGAACAAATGATTATTTTGCTTCTATTTTTTCGTTTGATTCTTTTGGGCAGCTGTGGATAAATCATTGTTGCTGAATTTGAACATTGAATTGAAATGATAGTTTTGGAGTTGGGATGTTTTCTTGTGGAGTTGAGTGAGTGTGTTGTTTGTACAAATCTTTCAATTGTGTTCTTTTTGCTGTCTTATTGTAGGTTTTCTACTGAAGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAAGTAAGCATTGGTTTAACCGTTCGAATCTCGGAATCATGTTCATTAGATAGCAACTGATATCTACCTGTTTTTTGTCTTTTGATTGCAGTATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTGTAACTAAGTGGTTAGAACTTCTGTTTGCTTCTATTTTTGCAGAAAATGATGGATGTTCTTTGTTTTTCTTTGTTAATTTGATCATATGAGGCTTATGTTGGATTTTGTTTTTGGATTTATAGTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATGTAATGTTCTTCTGATAACCCTTTTAACTTCTGTTGCAATATGTATCATTTTTGTGGATCTTTTTTCTTAAACATGTAAGCCCATTGCATTGTTTTGTGAAGATGTTTTAAATGAATATTTCCGCACAAGATGTTATGTCATGCATGTAGTAGTGACATTAGATTAGTAGAAAACTAGGGTCGTTACAATATTCTTCTGACAACCCTTGTAACTTCTATTGCAATACATATCGTAGGTGTTGAGGATTGTTGGGAGGGAGTCCCACATTGACTAATTAAGAGGACAATCCTTGGTTTGTAAGTAAGGAATATATCTCCATTGGTGGGGGAGGCCTTTTGGGGAAACCAAAAGCAAAACCACGAGAGTTAT

mRNA sequence

TCTTCTCTCGACGTCTGCGTACTCTCTTCCCATTTCCACACCGATCCTCTGGTGGGATCCGAGCAATTGTCTCCTATCGTTCTGGAGTCCTCTTCAAATTCAATCTAACAATCTGTATTTTCTGAAATTTTTATTAGGATTCTCTTCATATAACTCTGCGGCATCATGTTCAAAAAGTTTTCTACTGAAGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATGTAATGTTCTTCTGATAACCCTTTTAACTTCTGTTGCAATATGTATCATTTTTGTGGATCTTTTTTCTTAAACATGTAAGCCCATTGCATTGTTTTGTGAAGATGTTTTAAATGAATATTTCCGCACAAGATGTTATGTCATGCATGTAGTAGTGACATTAGATTAGTAGAAAACTAGGGTCGTTACAATATTCTTCTGACAACCCTTGTAACTTCTATTGCAATACATATCGTAGGTGTTGAGGATTGTTGGGAGGGAGTCCCACATTGACTAATTAAGAGGACAATCCTTGGTTTGTAAGTAAGGAATATATCTCCATTGGTGGGGGAGGCCTTTTGGGGAAACCAAAAGCAAAACCACGAGAGTTAT

Coding sequence (CDS)

ATGTTCAAAAAGTTTTCTACTGAAGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGA

Protein sequence

MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQSGCCEQCATLFQYP
Homology
BLAST of Carg27380 vs. NCBI nr
Match: KAG7023988.1 (TMA20 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.4 bits (355), Expect = 3.0e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQSGCCE 60
          MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQSGCCE
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQSGCCE 60

Query: 61 QCATLFQYP 70
          QCATLFQYP
Sbjct: 61 QCATLFQYP 69

BLAST of Carg27380 vs. NCBI nr
Match: KAG2256652.1 (hypothetical protein Bca52824_075946 [Brassica carinata])

HSP 1 Score: 99.8 bits (247), Expect = 1.0e-17
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI-----SKPSQ 60
          MFKKFS E+VS+QNQVK SVQRRIRQSI +EYPGLE V+DDLLPKK+PLI      KPS 
Sbjct: 1  MFKKFSLEEVSSQNQVKTSVQRRIRQSIQDEYPGLETVMDDLLPKKSPLIVVKWFPKPSY 60

Query: 61 SGCCEQCATLF 67
            CC+QCA  F
Sbjct: 61 PSCCQQCALFF 71

BLAST of Carg27380 vs. NCBI nr
Match: XP_022968801.1 (malignant T-cell-amplified sequence 1 homolog [Cucurbita maxima])

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-17
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. NCBI nr
Match: XP_023515958.1 (malignant T-cell-amplified sequence 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-17
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. NCBI nr
Match: XP_022961538.1 (malignant T-cell-amplified sequence 1 homolog [Cucurbita moschata] >KAG6590453.1 Malignant T-cell-amplified sequence 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-17
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. ExPASy Swiss-Prot
Match: Q75AA8 (Translation machinery-associated protein 20 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=TMA20 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.4e-08
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL 50
          MFKKFS ED+  + +VK SVQR ++  + E++P LE V+D+LLPKK  L
Sbjct: 1  MFKKFSKEDIHTRTKVKTSVQRSLKSKLVEQFPKLEEVIDELLPKKTEL 49

BLAST of Carg27380 vs. ExPASy Swiss-Prot
Match: P89886 (Translation machinery-associated protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TMA20 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-07
Identity = 22/49 (44.90%), Postives = 40/49 (81.63%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL 50
          MFKKF+ EDV ++++VK+S+QR ++  + ++YP +E V+D+L+PKK+ +
Sbjct: 1  MFKKFTREDVHSRSKVKSSIQRTLKAKLVKQYPKIEDVIDELIPKKSQI 49

BLAST of Carg27380 vs. ExPASy Swiss-Prot
Match: Q86KL4 (Malignant T-cell-amplified sequence 1 homolog OS=Dictyostelium discoideum OX=44689 GN=mcts1 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 1  MFKKFSTEDVS-AQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKK S +  S   NQ+K+S+QR I+ SI  +YP L+ + +D+ PKK P++    Q+
Sbjct: 1  MFKKLSLKGSSNTNNQIKSSLQRNIKNSILAQYPKLKDIEEDVFPKKVPIVQVKCQN 57

BLAST of Carg27380 vs. ExPASy Swiss-Prot
Match: P87313 (Translation machinery-associated protein 20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tma20 PE=3 SV=5)

HSP 1 Score: 48.9 bits (115), Expect = 2.7e-05
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 1  MFKKF-STEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL 50
          MFK+F S ED+     +K+S+QR I+  + + YP L+ V+D+L+PKK+ L
Sbjct: 1  MFKRFNSREDIKGTTPIKSSIQRGIKAKLVQAYPNLKQVIDELIPKKSQL 50

BLAST of Carg27380 vs. ExPASy Swiss-Prot
Match: Q2KIE4 (Malignant T-cell-amplified sequence 1 OS=Bos taurus OX=9913 GN=MCTS1 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 1  MFKKF-STEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL 50
          MFKKF   E+VS   Q+K SV + I+  + E++PG+EP L+ ++PKK P+
Sbjct: 1  MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPV 50

BLAST of Carg27380 vs. ExPASy TrEMBL
Match: A0A6J1HVW2 (malignant T-cell-amplified sequence 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467930 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.3e-18
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. ExPASy TrEMBL
Match: A0A6J1HC33 (malignant T-cell-amplified sequence 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111462086 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.3e-18
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. ExPASy TrEMBL
Match: A0A0A0LYF6 (PUA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569260 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. ExPASy TrEMBL
Match: B3TLK5 (Pseudouridine synthase and archaeosine transglycosylase-like protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. ExPASy TrEMBL
Match: A0A6J1C273 (malignant T-cell-amplified sequence 1 homolog OS=Momordica charantia OX=3673 GN=LOC111007697 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. TAIR 10
Match: AT1G09150.1 (pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein )

HSP 1 Score: 80.9 bits (198), Expect = 4.5e-16
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI 51
          MFKKF  E++S+QNQVKASVQRRIRQSI +EYPGLE V++DLLPKK PLI
Sbjct: 1  MFKKFCLEEISSQNQVKASVQRRIRQSIQDEYPGLESVMEDLLPKKIPLI 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7023988.13.0e-30100.00TMA20 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG2256652.11.0e-1770.42hypothetical protein Bca52824_075946 [Brassica carinata][more]
XP_022968801.11.7e-1791.07malignant T-cell-amplified sequence 1 homolog [Cucurbita maxima][more]
XP_023515958.11.7e-1791.07malignant T-cell-amplified sequence 1 homolog [Cucurbita pepo subsp. pepo][more]
XP_022961538.11.7e-1791.07malignant T-cell-amplified sequence 1 homolog [Cucurbita moschata] >KAG6590453.1... [more]
Match NameE-valueIdentityDescription
Q75AA84.4e-0853.06Translation machinery-associated protein 20 OS=Ashbya gossypii (strain ATCC 1089... [more]
P898862.2e-0744.90Translation machinery-associated protein 20 OS=Saccharomyces cerevisiae (strain ... [more]
Q86KL42.0e-0542.11Malignant T-cell-amplified sequence 1 homolog OS=Dictyostelium discoideum OX=446... [more]
P873132.7e-0544.00Translation machinery-associated protein 20 OS=Schizosaccharomyces pombe (strain... [more]
Q2KIE42.9e-0446.00Malignant T-cell-amplified sequence 1 OS=Bos taurus OX=9913 GN=MCTS1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1HVW28.3e-1891.07malignant T-cell-amplified sequence 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1HC338.3e-1891.07malignant T-cell-amplified sequence 1 homolog OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A0A0LYF61.8e-1789.29PUA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569260 PE=4 SV... [more]
B3TLK51.8e-1789.29Pseudouridine synthase and archaeosine transglycosylase-like protein OS=Cucumis ... [more]
A0A6J1C2731.8e-1789.29malignant T-cell-amplified sequence 1 homolog OS=Momordica charantia OX=3673 GN=... [more]
Match NameE-valueIdentityDescription
AT1G09150.14.5e-1678.00pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing ... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041366Pre-PUA domainPFAMPF17832Pre-PUAcoord: 7..50
e-value: 8.8E-11
score: 42.3
NoneNo IPR availableGENE3D3.10.400.20coord: 1..66
e-value: 2.7E-7
score: 32.4
NoneNo IPR availablePANTHERPTHR22798:SF9BNACNNG06600D PROTEINcoord: 1..51
IPR016437MCT-1/Tma20PANTHERPTHR22798MCT-1 PROTEINcoord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27380-RACarg27380-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001731 formation of translation preinitiation complex
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003723 RNA binding