Carg27380 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTTCTCTCGACGTCTGCGTACTCTCTTCCCATTTCCACACCGATCCTCTGGTGGGATCCGAGCAATTGTCTCCTATCGTTCTGGAGTCCTCTTCAAATTCAATCTAACAATCTGTATTTTCTGAAATTTTTATTAGGATTCTCTTCATATAACTCTGCGGCATCATGTTCAAAAAGTGAGTTCTCTCTATATTGCTCGTTATTCGGCTATGATTTCATGTCTTTGCTTGATGATTGTGGAAAATGATATCTAGGTTTTGTTTTTCGGGGATTAAAATATGAGGAAATGGTTTGATTTCTTCACTTTTTGTTACTGGTCTCTGGATTTTGCTCGATTAGTGTCTTCTCTCTCGTTCTACGCTGGGGATTTGTTTGTAGGGTTGATTCTTCTCATAGGAAAAGAGGATTGTTTTGCTTCTGTTTTTCGATTGATTGTTTTGCCCTAGATTTCTACTTGCCGAGAGTCGTTATCGTTGTCGTAATGTGTCATAATGTGCGGAAATAATCATTTGAAACTTCGATATAAGACATAAACTTCATCTTAAAACACTGTCATGAGCTTACTTGTTCGAAAACATCTTTAAACCGACACAACGAAATACTAAATGCAATAAATAAATATTAGAATTAATGCAACTATCCTATGCACGTGTCATGGTTTCGAATTGCGATGTCGTCGTTAGCCGTAGAGGCCTTGCCTTTACTTGAAAATGATTGTTTTGCTTCTATTTTTCGTTTGATTGTTTGCCCTAGATTTCTATTTGTCGAGAGTTGCTATCGTCGTCATAATGTGCAGAAATAATCATTTGAAACTTTGACATAAGACATAAACTTCATCTTAAAACACTGTCATGGACTTACATGTTCGAAAACATCTTTAAAACGACTCAACGAAATACTAAATGAAATAAATAGACATTAGAATTAAAAACATCTTATCCTAACCTAAGACTAAGGAAATAAATGCAACTGCCCTATGCATGTGTCATGGTCTCGAGTTGCGATATCATTGTTACCCGTACAGGGATGCCTTGCCTTTCCCTGAACAAATGATTATTTTGCTTCTATTTTTTCGTTTGATTCTTTTGGGCAGCTGTGGATAAATCATTGTTGCTGAATTTGAACATTGAATTGAAATGATAGTTTTGGAGTTGGGATGTTTTCTTGTGGAGTTGAGTGAGTGTGTTGTTTGTACAAATCTTTCAATTGTGTTCTTTTTGCTGTCTTATTGTAGGTTTTCTACTGAAGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAAGTAAGCATTGGTTTAACCGTTCGAATCTCGGAATCATGTTCATTAGATAGCAACTGATATCTACCTGTTTTTTGTCTTTTGATTGCAGTATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTGTAACTAAGTGGTTAGAACTTCTGTTTGCTTCTATTTTTGCAGAAAATGATGGATGTTCTTTGTTTTTCTTTGTTAATTTGATCATATGAGGCTTATGTTGGATTTTGTTTTTGGATTTATAGTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATGTAATGTTCTTCTGATAACCCTTTTAACTTCTGTTGCAATATGTATCATTTTTGTGGATCTTTTTTCTTAAACATGTAAGCCCATTGCATTGTTTTGTGAAGATGTTTTAAATGAATATTTCCGCACAAGATGTTATGTCATGCATGTAGTAGTGACATTAGATTAGTAGAAAACTAGGGTCGTTACAATATTCTTCTGACAACCCTTGTAACTTCTATTGCAATACATATCGTAGGTGTTGAGGATTGTTGGGAGGGAGTCCCACATTGACTAATTAAGAGGACAATCCTTGGTTTGTAAGTAAGGAATATATCTCCATTGGTGGGGGAGGCCTTTTGGGGAAACCAAAAGCAAAACCACGAGAGTTAT TCTTCTCTCGACGTCTGCGTACTCTCTTCCCATTTCCACACCGATCCTCTGGTGGGATCCGAGCAATTGTCTCCTATCGTTCTGGAGTCCTCTTCAAATTCAATCTAACAATCTGTATTTTCTGAAATTTTTATTAGGATTCTCTTCATATAACTCTGCGGCATCATGTTCAAAAAGTTTTCTACTGAAGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATGTAATGTTCTTCTGATAACCCTTTTAACTTCTGTTGCAATATGTATCATTTTTGTGGATCTTTTTTCTTAAACATGTAAGCCCATTGCATTGTTTTGTGAAGATGTTTTAAATGAATATTTCCGCACAAGATGTTATGTCATGCATGTAGTAGTGACATTAGATTAGTAGAAAACTAGGGTCGTTACAATATTCTTCTGACAACCCTTGTAACTTCTATTGCAATACATATCGTAGGTGTTGAGGATTGTTGGGAGGGAGTCCCACATTGACTAATTAAGAGGACAATCCTTGGTTTGTAAGTAAGGAATATATCTCCATTGGTGGGGGAGGCCTTTTGGGGAAACCAAAAGCAAAACCACGAGAGTTAT ATGTTCAAAAAGTTTTCTACTGAAGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGA MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQSGCCEQCATLFQYP Homology
BLAST of Carg27380 vs. NCBI nr
Match: KAG7023988.1 (TMA20 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 141.4 bits (355), Expect = 3.0e-30 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
BLAST of Carg27380 vs. NCBI nr
Match: KAG2256652.1 (hypothetical protein Bca52824_075946 [Brassica carinata]) HSP 1 Score: 99.8 bits (247), Expect = 1.0e-17 Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 0
BLAST of Carg27380 vs. NCBI nr
Match: XP_022968801.1 (malignant T-cell-amplified sequence 1 homolog [Cucurbita maxima]) HSP 1 Score: 99.0 bits (245), Expect = 1.7e-17 Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. NCBI nr
Match: XP_023515958.1 (malignant T-cell-amplified sequence 1 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 99.0 bits (245), Expect = 1.7e-17 Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. NCBI nr
Match: XP_022961538.1 (malignant T-cell-amplified sequence 1 homolog [Cucurbita moschata] >KAG6590453.1 Malignant T-cell-amplified sequence 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 99.0 bits (245), Expect = 1.7e-17 Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. ExPASy Swiss-Prot
Match: Q75AA8 (Translation machinery-associated protein 20 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=TMA20 PE=3 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 4.4e-08 Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0
BLAST of Carg27380 vs. ExPASy Swiss-Prot
Match: P89886 (Translation machinery-associated protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TMA20 PE=1 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 2.2e-07 Identity = 22/49 (44.90%), Postives = 40/49 (81.63%), Query Frame = 0
BLAST of Carg27380 vs. ExPASy Swiss-Prot
Match: Q86KL4 (Malignant T-cell-amplified sequence 1 homolog OS=Dictyostelium discoideum OX=44689 GN=mcts1 PE=3 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05 Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 0
BLAST of Carg27380 vs. ExPASy Swiss-Prot
Match: P87313 (Translation machinery-associated protein 20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tma20 PE=3 SV=5) HSP 1 Score: 48.9 bits (115), Expect = 2.7e-05 Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of Carg27380 vs. ExPASy Swiss-Prot
Match: Q2KIE4 (Malignant T-cell-amplified sequence 1 OS=Bos taurus OX=9913 GN=MCTS1 PE=2 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04 Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of Carg27380 vs. ExPASy TrEMBL
Match: A0A6J1HVW2 (malignant T-cell-amplified sequence 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467930 PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 8.3e-18 Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. ExPASy TrEMBL
Match: A0A6J1HC33 (malignant T-cell-amplified sequence 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111462086 PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 8.3e-18 Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. ExPASy TrEMBL
Match: A0A0A0LYF6 (PUA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569260 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17 Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. ExPASy TrEMBL
Match: B3TLK5 (Pseudouridine synthase and archaeosine transglycosylase-like protein OS=Cucumis sativus OX=3659 PE=2 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17 Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. ExPASy TrEMBL
Match: A0A6J1C273 (malignant T-cell-amplified sequence 1 homolog OS=Momordica charantia OX=3673 GN=LOC111007697 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17 Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. TAIR 10
Match: AT1G09150.1 (pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein ) HSP 1 Score: 80.9 bits (198), Expect = 4.5e-16 Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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