Carg26738 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26738
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionFiber protein fb11
LocationCarg_Chr17: 3596761 .. 3600063 (+)
RNA-Seq ExpressionCarg26738
SyntenyCarg26738
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAGATCAAAATCAGTTTGGTTCTATCGTTCTCTGGTCCGGTCCATCCAAAAACCGCAAATCTTTTCAGTCGTAAACTTTGGACTTCGAAGAATCAAGCCACGAACGTTCAGTTCAGGAAGCGAATCAGACGAAACCTTCAAGAAAATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCCGTAGTGGTTGCATCTTGTCTAATCGGAGGAATTGGTACTTGCTCTTTCCTCTTTAGAGCCCTAATTATCGTTCAATTTTTCATTTCTTTTGATCGATGGCATGAATCCATATGTTTTCTTTCAATTGTCGCTCATATCTATCTATTGGGAAGATCATATTTAAATGTTTTCTTTTCGGGTATTCTATATAGTTTCGGATGCGAAAAAACAATGTCGATTGAAAGCTCCTTTGTCTGACTAAATAGATTTTCGTATTTCAACCTTGTGTGTAGGATTCAGCTTTGCCTATATATATTCTGTTTCGGTGTTTCTAGTGACCGTAAATTTGTTAAGATGTTGGGATTTGTTCGTTTAAATGCTTATTAATGTTCGAGATGGGAGTTTTGGACCTTTGAGCCGGCTACCGAAGTGAGCTGCTAGCCCAAGACATACACACCTTTTCAATAGAAATGTACACGCAAGCCAAGATGGCTGAACTATCCCGAGACATAGGATGATATCATGATGCATAGGTTGCATTGTTGGGAACCAAGATGATCACTGAGATGCGATCTTGCACTTGAGAGACCTTGGCGTAGAATAGAGGCAAGGTCAAGCCAAATGACTAGGCCTAGTGTAGAGACAAGTTGACTAGGAGTCTGTGTGGTTGAACAAGCTTAGATGCCGCACGAGTTGTGTTCGGTTGATGAAGGAGAACCTCACCTAAGGTCCGATAAAGCCACGAAAACGGGTAAAAATATGAATGAGGCTTGAGCTCCCCTTAAGACTTGTCATGAGAGTGTCAAGATCATAACACTGCACAGTTGAAAATGTACAACCGATAGTCGAACTATGGTTCATATACTAAGAGTATAAGAATGAAATAGAGAAATTAAGGATTTACCATTAAAGACGAACTATGGTTCATATACTAAGAATCTACAAAATCTTACAGATAAAATTCAAATTACGTAACGAATATCCTAAGAATTGGGACATGTCTTCACTAAATAGGTTCTCATATCTATGTTGGCCATAACTAGTCATATGTGCTTCCTCTGCCTAATTTAACTGTAGTTATAAAAGAAAATGTTGCCCATCACTCAACAATATTAGATGCTCCACCTAGCTTTAGCATCAAGTGTGAACTATCTGGAACTTTTAAACAACACTGAAATGAGGGTTTGAAATAATTGCTAATATAGGTGGCAATGCAAGGGATAAGATTTTATGGAGTTTAGACTCTTGAGGTCTTTCTTCAGTTAAAACTGCTTGTATATTGGGTAATCAATTTCATAATAATTCTGAGGCTTCTTGCTCAGCTTATCAAATGTTGGAAAATTGTGGGGAAAAAGGGTGCTTGCTAAGTTGAAAACATTCTAATGGAAAGTTTACAATGTTATTATTCTATTCCTAGCAGTTTCAATTTGAGAAAGAAGGTTTTATGAGTTCATCCTTCACAGAGAAACTATGTCCTGTTCCATTTGGAGATGTTTTGCAAGATAGATTGCGGGAAATTTGTTCTCAGAATTGGATTTAAGTTCCACCGATAATTTAGCATCACTGAGAACTGGGCATCTTCAGCCAATTAGCCCTGTGCTCCCCAACACTCCTAGGATTAGCAACCTACCAGAGTTTGGAGCCACTTACCTGCATATGTTTATACCAACTAGTCACAGGTTGTTAAATGAAACACAATAGCAAATTGATAGGACCCCACTGGCCAGAAAATAACAAATAGAACTATAAAGCAATATGAAATTGATAATCGTGGACATGCATTTGATGAATCTCTGCAACCTTGACCTAAAGTTTCAAAGGTTTCTTTCTTCAACAAATAAGTATCCTTAGCTTTGTTCATCCTTCTTAAAAAGGTACTACATTTGGACTTTTTGTGTTTCTTACCACAATAACCAAAAACTGAACTAAAAGAAAAATGACTTATTTCTTCCCTACAACCAATAAACTCCATTGATTAATATCCATTTTCAACATCTTGATGAAGCAAGAGAGAATGAGAGGTGGAATTACCGCCTTACCTTCTTCATTTTTCATGATAAACTGATAAGTGAGATCAAGTCCAATTTTTACGCGCTTTTTCGGTTTGATTGGCTACCACATGGAACATATGTGTACATTTTGGTTTCTTACATATTACAAACCTTGTAGGTCTTTTCCTTCCTGCCGTCGTAAGACCAATTCTGGATTCATACGAAGCATCTAAGCAAGCTCCTCAGCCTGTATTAAGTGATGTAAGTACGGAATCTTGACAAGTTTTAGACATTCATTCTTTTCTGATGTGTGGTTTGGTTGGATCATTTGGGCCAAATGTAAACGTGAGTTTCTTTGCTTATGTCTTGAAGTTTATGTTTCTTTGGTACTTATTATCATTCTCAGCCTCTGGTAAGTGAGATTCCTTGCCACTTTCCAAAAACATATGCCAGCCAGTATCTAAGTGGGGAACAATCAATAAATCTACCCTAAAAAAACCAACAATTTCTTGTTTTTCCCTTTCTTTGATAGGAGGAAATTTTTTTACTTTTCTTACAATGTTCATTGTAAATTTCTGTATTGTCAAATTTGTAGGTGGTTGCGAGTATGACTGGAAAGAAATGAGGATGATTGGTATCGGTGACATAAGAAGGTTGTTCTTGATGGATCAATGATCATTCTCTTCTGCCATAAAATAAGTCTGTACAATCTTTTTAAACGTCATGGTTGATAGCAATAGTTATTGCTACACATTCACTTGTTTTATGCCCAATGCATAAGACTGATTTTCAAGATATTTCAGCTTTGAGCACTCCGTTTGAAGCCCTGTCAAAACTTGGTTTCACCATAAATTGAGTTCTAAAAACTCGGTTTGATTTTCTTTTCTTGTTTGTTTCAAATGTGGGATCGAACCGTTGACTTTTGGGATGGTAAGTTGATAATTGGCAAAAAGTCAAATTGAGCGTACCTCATTATATACATTATGAAAGAACTAAAACACGAATCACTTCATCCTTGTTTCTAATGTTCTTTCATTTTGGTTGTTTTTGTTTGAATTAATTATTTTATTCACATAGTTTTTTGGGTTCATTTATGAAGGTTGAAGGTTTAAGTTGCATTACGAATCATTATGATATGTAG

mRNA sequence

TAAAGATCAAAATCAGTTTGGTTCTATCGTTCTCTGGTCCGGTCCATCCAAAAACCGCAAATCTTTTCAGTCGTAAACTTTGGACTTCGAAGAATCAAGCCACGAACGTTCAGTTCAGGAAGCGAATCAGACGAAACCTTCAAGAAAATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCCGTAGTGGTTGCATCTTGTCTAATCGGAGGAATTGGTCTTTTCCTTCCTGCCGTCGTAAGACCAATTCTGGATTCATACGAAGCATCTAAGCAAGCTCCTCAGCCTGTATTAAGTGATGTTGAAGGTTTAAGTTGCATTACGAATCATTATGATATGTAG

Coding sequence (CDS)

ATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCCGTAGTGGTTGCATCTTGTCTAATCGGAGGAATTGGTCTTTTCCTTCCTGCCGTCGTAAGACCAATTCTGGATTCATACGAAGCATCTAAGCAAGCTCCTCAGCCTGTATTAAGTGATGTTGAAGGTTTAAGTTGCATTACGAATCATTATGATATGTAG

Protein sequence

MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVEGLSCITNHYDM
Homology
[Close]
BLAST of Carg26738 vs. NCBI nr
Match: KAG7013814.1 (hypothetical protein SDJN02_23983 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.2 bits (339), Expect = 2.1e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVEGLSC 60
          MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVEGLSC
Sbjct: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVEGLSC 60

Query: 61 ITNHYDM 68
          ITNHYDM
Sbjct: 61 ITNHYDM 67

[Close]
BLAST of Carg26738 vs. NCBI nr
Match: XP_022958795.1 (uncharacterized protein LOC111459960 [Cucurbita moschata] >XP_023547705.1 uncharacterized protein LOC111806568 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 55

[Close]
BLAST of Carg26738 vs. NCBI nr
Match: XP_023006679.1 (uncharacterized protein LOC111499335 [Cucurbita maxima] >XP_023006681.1 uncharacterized protein LOC111499335 [Cucurbita maxima])

HSP 1 Score: 107.5 bits (267), Expect = 4.7e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVVVASCLIGG+GLFLPAVVRPILDSYEASKQAPQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVVASCLIGGVGLFLPAVVRPILDSYEASKQAPQPVLSDV 55

[Close]
BLAST of Carg26738 vs. NCBI nr
Match: XP_038875998.1 (uncharacterized protein LOC120068338 [Benincasa hispida])

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASCLIGGIGLFLPA VRPILDSYEASKQ PQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAFVRPILDSYEASKQVPQPVLSDV 55

[Close]
BLAST of Carg26738 vs. NCBI nr
Match: XP_022959928.1 (uncharacterized protein LOC111460833 [Cucurbita moschata] >XP_022959929.1 uncharacterized protein LOC111460833 [Cucurbita moschata] >XP_023005103.1 uncharacterized protein LOC111498190 [Cucurbita maxima] >XP_023513591.1 uncharacterized protein LOC111778152 [Cucurbita pepo subsp. pepo] >KAG7025334.1 hypothetical protein SDJN02_11829 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.4 bits (254), Expect = 1.5e-18
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDS+EASKQ PQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDV 55

[Close]
BLAST of Carg26738 vs. ExPASy TrEMBL
Match: A0A6J1H4H1 (uncharacterized protein LOC111459960 OS=Cucurbita moschata OX=3662 GN=LOC111459960 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 55

[Close]
BLAST of Carg26738 vs. ExPASy TrEMBL
Match: A0A6J1L2U6 (uncharacterized protein LOC111499335 OS=Cucurbita maxima OX=3661 GN=LOC111499335 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.3e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVVVASCLIGG+GLFLPAVVRPILDSYEASKQAPQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVVASCLIGGVGLFLPAVVRPILDSYEASKQAPQPVLSDV 55

[Close]
BLAST of Carg26738 vs. ExPASy TrEMBL
Match: A0A6J1H9H3 (uncharacterized protein LOC111460833 OS=Cucurbita moschata OX=3662 GN=LOC111460833 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.3e-19
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDS+EASKQ PQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDV 55

[Close]
BLAST of Carg26738 vs. ExPASy TrEMBL
Match: A0A6J1L1A7 (uncharacterized protein LOC111498190 OS=Cucurbita maxima OX=3661 GN=LOC111498190 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.3e-19
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDS+EASKQ PQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDV 55

[Close]
BLAST of Carg26738 vs. ExPASy TrEMBL
Match: A0A068UM29 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00027698001 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.5e-19
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASCLIGGIGLFLPAVVRPILDS+E+SKQ PQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAVVRPILDSFESSKQVPQPVLSDV 55

[Close]
BLAST of Carg26738 vs. TAIR 10
Match: AT2G46540.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.7 bits (221), Expect = 9.4e-19
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKL+MFV QEPVV ASCLIGG+GLFLPAVVRPILDS EASKQ   P L+DV
Sbjct: 1  MPVMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDV 55

The following BLAST results are available for this feature:
BLAST of Carg26738 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013814.12.1e-28100.00hypothetical protein SDJN02_23983 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022958795.13.6e-20100.00uncharacterized protein LOC111459960 [Cucurbita moschata] >XP_023547705.1 unchar... [more]
XP_023006679.14.7e-2098.18uncharacterized protein LOC111499335 [Cucurbita maxima] >XP_023006681.1 uncharac... [more]
XP_038875998.11.2e-1894.55uncharacterized protein LOC120068338 [Benincasa hispida][more]
XP_022959928.11.5e-1892.73uncharacterized protein LOC111460833 [Cucurbita moschata] >XP_022959929.1 unchar... [more]
BLAST of Carg26738 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26738 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H4H11.7e-20100.00uncharacterized protein LOC111459960 OS=Cucurbita moschata OX=3662 GN=LOC1114599... [more]
A0A6J1L2U62.3e-2098.18uncharacterized protein LOC111499335 OS=Cucurbita maxima OX=3661 GN=LOC111499335... [more]
A0A6J1H9H37.3e-1992.73uncharacterized protein LOC111460833 OS=Cucurbita moschata OX=3662 GN=LOC1114608... [more]
A0A6J1L1A77.3e-1992.73uncharacterized protein LOC111498190 OS=Cucurbita maxima OX=3661 GN=LOC111498190... [more]
A0A068UM299.5e-1992.73Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00027698001 PE=4 ... [more]
BLAST of Carg26738 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G46540.19.4e-1981.82unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36026OS05G0542100 PROTEINcoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26738-RACarg26738-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane