Carg25568 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25568
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 4705210 .. 4706046 (-)
RNA-Seq ExpressionCarg25568
SyntenyCarg25568
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAATGAAAGAAGAGAGAAATTACAAAAAATGAGCTGATCGTGAGAAGAGAGCAAGTAAAATCGAAAGTTTAAGGGAGTAAACACTAGAAGAAGACTTGAAATGCACGTGAGCCAAATTTCCTCCCTTGATATGTTAAAACCGTAAGATTTAGGTGTTAGTGGTGGTTGCTATTACAAACAATTGTGAGAATTCTGATCACTAAATTTCTATGGTATTTAATTGCCATACAATTTAGCATGTTTTTGTATGATAGAGGTGAATTGGCAAAATATGTGCTTCGTTGACAAGATGAATCTCGAATGTCTTAGGAATGCAAAGACACCATTGGTTTCAACTTAGCAGCAATGGATCATCTCAAGGTTTGTATTTCAGTTTACAATCCTTTCCAATCGATTGCCGTGATGTGAACCTTCATCATTTCTTATAATTTCGGATAATTTCTTTTGTCCATTTCAGCAACTACTTTCCATGAGATCTGACGCACTATTTCAAGATGCTAAATTGAAGTTACAAGAAATTCGATCCCAGAATTCAAAGCGTTTGGAGACGAGGACAGATATGAGACAAGGAAAGAGAAAGAAGAAGAACAAGTAAATCCACTGATCCACCTGATTGGGTATAAGCTAACTCCTACTTGTTACCTGGCACTTTGTGTGGAATGGTTGCAGTTCTGCAGGAAGATACAGAGATTGTAAGATTATATAGCTCACTAAGATCACAATGTATTTGGTATCTGCCAATGGACGAGTGCGTTCAAGCTCTTACTATATTGCAGCTGCGAGGTTCGAGAGGTTCGAAAGGTTCGAAATGGCCATACGCATACCCAAAATCGACA

mRNA sequence

ATAATGAAAGAAGAGAGAAATTACAAAAAATGAGCTGATCGTGAGAAGAGAGCAAGTAAAATCGAAAGTTTAAGGGAGTAAACACTAGAAGAAGACTTGAAATGCACAATTCTGATCACTAAATTTCTATGGTATTTAATTGCCATACAATTTAGCATGTTTTTGTATGATAGAGGTGAATTGGCAAAATATGTGCTTCGTTGACAAGATGAATCTCGAATGTCTTAGGAATGCAAAGACACCATTGGTTTCAACTTAGCAGCAATGGATCATCTCAAGCAACTACTTTCCATGAGATCTGACGCACTATTTCAAGATGCTAAATTGAAGTTACAAGAAATTCGATCCCAGAATTCAAAGCGTTTGGAGACGAGGACAGATATGAGACAAGGAAAGAGAAAGAAGAAGAACAAGTAAATCCACTGATCCACCTGATTGGGTATAAGCTAACTCCTACTTGTTACCTGGCACTTTGTGTGGAATGGTTGCAGTTCTGCAGGAAGATACAGAGATTGTAAGATTATATAGCTCACTAAGATCACAATGTATTTGGTATCTGCCAATGGACGAGTGCGTTCAAGCTCTTACTATATTGCAGCTGCGAGGTTCGAGAGGTTCGAAAGGTTCGAAATGGCCATACGCATACCCAAAATCGACA

Coding sequence (CDS)

ATGGTTGCAGTTCTGCAGGAAGATACAGAGATTGTAAGATTATATAGCTCACTAAGATCACAATGTATTTGGTATCTGCCAATGGACGAGTGCGTTCAAGCTCTTACTATATTGCAGCTGCGAGGTTCGAGAGGTTCGAAAGGTTCGAAATGGCCATACGCATACCCAAAATCGACA

Protein sequence

MVAVLQEDTEIVRLYSSLRSQCIWYLPMDECVQALTILQLRGSRGSKGSKWPYAYPKST
Homology
[Close]
BLAST of Carg25568 vs. NCBI nr
Match: KAG7027235.1 (hypothetical protein SDJN02_11246, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.8 bits (312), Expect = 2.5e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MVAVLQEDTEIVRLYSSLRSQCIWYLPMDECVQALTILQLRGSRGSKGSKWPYAYPKST 60
          MVAVLQEDTEIVRLYSSLRSQCIWYLPMDECVQALTILQLRGSRGSKGSKWPYAYPKST
Sbjct: 1  MVAVLQEDTEIVRLYSSLRSQCIWYLPMDECVQALTILQLRGSRGSKGSKWPYAYPKST 59

The following BLAST results are available for this feature:
BLAST of Carg25568 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027235.12.5e-25100.00hypothetical protein SDJN02_11246, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg25568 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25568 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25568 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25568-RACarg25568-RAmRNA