Carg25416 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25416
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSignal recognition particle subunit SRP68
LocationCarg_Chr11: 4386965 .. 4393473 (+)
RNA-Seq ExpressionCarg25416
SyntenyCarg25416
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCATGGCCGTGGAAAGTACACCAAACGAGCCATAACTCAATCAACTGTTACTGAAGTCAGGTTTGTCCCATTTAATAGTTTTTTAATGCCGAGAGTAGCATAATTTTGTCGAATATTTACATGTTGCTTCTATACTCGCCCTTTTTTTGTTTGCGCTTCAAAGCAGTCTCCTCCTGTTACTGATTAGAAAAATACTCTAGATATTGTTAACTAGATGGTCAATGATGTCTCCCCTTAATGTACACTGATTCTAATGAAGTGGGGAAGGAAAAAGGAAGGGAAAGAAGATGGCGAAGTGTTAATTTATTTGAGCATTGTCTGTGGCTGTGTTAAATTCAACAAAGTTTAAAACTATCAACCTTCTGGATTTAAAATAGGTTTCTCCATGTGGTTCTTTATACGGCGGAGAGAGCATGGAGTCATGCCATGGAGAAAAGGCAATTACCAGAGGTCCAAATGCACGTCAGCGTATCTATTTGATTGGTTAGGCTCAGAAAGGCAGTAAAATGGGCGGACTCTCTTCGCACAATTGTGTGCAAGCAAGGGAGACTCAAGAACATCTTGGAAGCAGAGGTTTGGTCCTAGTTTTCTTCTTATGGAATATATGTTATATATGATACTCTTTTAACTTCGAAATTTTAGAATTACGTCTTCATGAAGAGTGATTTTTCATAATTTTTTTTTTTTTTTTTTTTTTTGTTTCTCAGCTGATAATTATTTGTTCATATATGTAGGCTTATGCATCTTATATGACTGGGAACTTGTTGTTTGAACAAGATCGGAATTGGGACATAGCATTATTGAACTTCAAAAGATCTAGGTGCTTCCTTGTATTTTCTCGATCTTTAAATTCCTTCTTAGAATGATCAACTAATTCTTGCATTACCTTCTTTTTAAGGGTTAATATGCATTATGCAAAATTTTTTGCTCTATGGATGTTTTACTAGCTATTTTTGTTTATTTATTTATTTTTCTGTCCTCTATATTAGAAAGGTCAAAAATCCCTTTGAGAGATAATGCCACTGTCATACTAGGAAAGTCTGGAAGACTCATTTAGAAGAGACTTTGGGATTGAATTGGGTTTAGTACCTCTATTCAAGCTTTAATTCCCACAAATTTGCATATAAATTGTTTTGATTTAGATGGCTGGTACACTGTGTTGACATCCCGTAATTCTTCCCTCTCCTACTCTTTTCACTGAAAGTAATATTTTGTTCCAACCAAATTTCCCAAAAAATGGCCCTAGAAGCATTAAGTGAAAAAGTTCGCATCTTTTCTTTGAAACTTTTGACCAAAAAGGAGAATATGAATGGCTTTCGTGATCCTTGAAAGTTGGGTAAGCTGACAGCAAAAGGATCATTAAAGCTTCAGTGTGTAATTGCAACTGAGGAAAAGGCGATTAGCATTCTTATTCATACTGTTGAAGATCACCGTAGGATAATGCGAAGACAATTACATATCTATGATGTATACTGTTATCCATTTGTAAAGAATCAAATAATTGTGAAGGATACATCTTATAGCAATAAAATTTGTAAAGCACACTTGATCTCTTAAAGGCCCTGCATTGTTTATCATCTCATTTTGATTTAGATAACATGATTAGCTAATATTATGTTTACCTTTCAGAGCTGTTTATGAGGAACTTGGGAAAGTAGGAGATCTAGAGAATCAAGTTTTGTGCCGTGAACGTGTGGAGGAGCTAGAACCTAGTATAAGATATTGCTTGCACAAGATTGGCAAGTCAAATATCCAGGCCTCTGAACTTCTACATATTGGGGAGATGGAAGGCCCTGCTCTAGACCTTTTCAAAGCTAAACTAGAGGTCTGTTTGCTTGCCTTTTACTTTCAAGTTTATTCATTTATCATTTTTGTTCAGATTCTTATTTATTTGATTTATAAGCATTGCATATACAATGTATTTATGTACGAGCACCATAAATTAAACAATTTTACTGAAAGAGATCTGTCAGCTAACAAAAATCTCAGACTCATATTGGTTTTCACAGTTTATAAGAATTCAATTCTCTTGTTGATTTCGGTGTTTCCTTTTCTGCAAAGTTGTTTTATTGTCAATAAAGTTATCTATTAGTTTTCAAGAAAGCGTTGTTTGAGACTTTGGTTTTGATTTAATTGATTCCAGACCAACTTTTTGCTTTAAAAGTGTTCTGGCTTCAACGAAGTTTTTTTTTATTTAGTTTGGAGAGGTTTTCGCCCAAGGACAAGTTTGAGTTTTTAGACTAGATTCTCTCATCTCCCTTTCTTTTAAGACTTCAGTATAGGCATAGATCTTTGTGGTTAATGGTGGTGGACCTGTGGTTGTTATACCTTCACTTTCTCAATGGAAGCTTGGGTTTTCATAAAAAGAGAAAAAGGTAAAAAGAAAATAAAAACCTTGTATGCTTCATTATTGGTATCCTGACCACGGGTTCTTTTCCCAGTAGTTAGCAGACGAGTAATCTAACAGTAGTTGAAGTCAAGATAGACCAGTTTATCTTAATGTGGATTCAAACAGAGGTTTATCTATAACTGTAGTATACTTGTTATTGATCGTTGTCTATTTGTTGTTAGATAGACCGTAGACCTAAGAACATTGCTTGTTATAGAGAAACATAAGACAACAGATAATCACATGAGAATATCCTTCACACTGCCTACTGCTTGATACATTAAAGTTTCTCAATAATCGTGGCATTGATTTTCTCTTGTTTTCTTGTTTTGGTTAATCTGATAATGTTTTTCACTCTTTTAGTCTATGTAGCGGTCTTAGCTTATTGTTATAATCTTGTACATTCTTGCTCTGTAGGCTGTCATGTCGGAGGCCAGATCTCAGCAGGCCTGTTTCCCATGACGGAGTTTCATTGCTTGGTCATAGGTTTCCAATATCAATGCTAAACAACTAGAGTTTCCATATTGAAAGGTTGGTGATTCGTTTAGCATCGTTTAAATACTGGATAAATATGATGATTTTATTGTGTAGTAACTTAGACTGCTAGTAACCAGAAATTTAATGGCCTGTATCTTATATGCTCCAACAAAGAGGTTGCTTTCCAAACTTATAGATGCAATATTTAGTTTGTCCTTGGTAGAAATCTCCTAAAAAAGATGCGGGGTTGGCGGAACAACGGTTTAACAGTAGAGATGTAAAAGATGACTTCTATAGTGAAGAATACTTCTACTGTATTCTGAATAAGCATGACTACTTTAATCCCTTTCGGTTATTGATTTAATATCTCTGTGGAATTTTCGGGGTGTCCCTATTGCAATCAGTTCTGGGTTTTAGACTGGATGTAGTGGTTGATGGGGGACGGTGAAGACTAACTCAAAATTGCGATGTAATAAGTATTACTCTTTCGCCTATTTGCAATTTTAAAACCAAGAAAATATGCAATCTTAATGGAGAACCCGTCTAGTAGGCAAAAGTTAATACCTCAATCGAATTGGGGAGGGGGCGAAAAGAGAACACTCCCAACTCCTTGCTTCCGAAAGGAAATACTAAAGGCCATCAGCTGTACTTTCTTATATTTTACTTGATCTAATGAAAGGTTTACTACTTTCCCCCTGTTAAATTTTCTCTCTTTATCTTAATTAATTGGCGAGTGTTCTGTTGCTATCATCTTTCTTCTTTCCGATTGCGATAACTTCCCACCTGAATTCTCATTTTATTTTAAGGTTGCTTACAAATGATATGTATGTTCACAGGACGTTTGACTTGTATCTAGAGTTCACCTCGGACTTTTTATGATTGCTTACACCGAAGTGTTTGGCACTAGATAAAGTTAGTGAAGGTATAGTTCGTAAACCTATTTTCCTGTAGGAATTCCTTTATTATGTTGTATTGCTAGAATCTGTCGAAGGCATGCACCTACCATTCAGGTTCATATTTTTCACTTTTAAAGTCATCCAGAATCGCATAATTATGTCTGCTCATGTAAATTAATCCTAGCTCGGGAAGTTACGAAAAGGATTTGCAAGATCAGCAGATTCACTTCCAGACCAGAAAAAGACTGACGCCATTTTTGATAAAGAATCTTTACAGCATACCATGAGGCAAGGAGCTCATTCGCATGATCTGGTATGTGGAAGATTGACATGTAGACTTCCTTTGAATTGTTCTAGAGTTTTGCATCTCTACTAATTCGATCTTCCAGACTTATGTTTGCCAGTGTTCTGTTTGAGTTAGGTCAGCCGCTGGAAATGCTGAAAAAATGTCAAAGATGATTTAAGTGGGCTTGATAAAGTGTTAGTTGCAGTGTGGCCAAAGGACAATTGAACGCAACCCAGTTATTGTGAAAATCGCAACAAGTAAGCTTGTTAGGGCCGCCACGATGAAAAAAATGAGAAAGTTAACCAAGCCGGAGGAAACTTGTTCCGCTTGTATGATCTCTTTCAGTTCAACAAGTTAAGCTAGTTTTATGTATTTCTCTTATACTTCCTCTTTTCGTGTTCTGTCATTGATTGCTCGACCACAATCTAGAGGTTTTTCAGAGTTAGTCAATTTAGCTTTTCTAGCAAGTTATAGTTATTGAGTTATTATTATTATTATTGCCGAATCTTGCTGAACCTTTCTGATTTAGCAGTTCGGAATAAGAGATAGGAAGCCAGGAAGAAGTGACATTTGCTTGAAGGTGCTCACTGTAAAAGTAATAGCTTTTCGTGGAAAAGCGTTTCTCTCCTGAATATTACTTTATCTTTCTATTCTGATCAGAACAGCCTCCATATTCTACAAGTTATGAGTCTAGCATTTTGCATTCTAAACTTTCTGTTCCTGTTGCTTTCGTAATTAATGTGAAACTATTTGCTCATAATGCGCTATATCCCGAGACCATGTTCCTTGAGCCTCATAACGCCTTGCCTTTAGCTGTATTCCCGCCACCTTCGTTGTTGTTTTTACATTCCCTTTCCTTCATACTTCGTTACCTGCCACGCTTGTATTATGCCCTGGCAACATAAAGTTGTCATTACTCACTCAACTTATGACTAGCTGTTGTCATAGATTATTTTTGTCTTTTGTTCTTGATAGTTGTCATTACTTCACCTCAATTATGGATTAATTGATGTTTGCTGAGCACTAATTTACCGTATGATGGGTCGATCCTCTAACTGATATTTTCAGGTGCTTTTACTTCGGCAAAATCATTACCAGTCTGGCTGAAAAAAGAGGCTGAAGCTCCATGTACTTTACTCGCCATGCTCGCCTCCTTGTCGAAGATGCCATACAAAAACTGTCCGTTCGGAAAATAATCAGTGAACCCGGTATGTGTATCATATGAGAATAGTCTGGTATCATACTGGTCAGGAGTCTGGACTTTTTGCAAGTAACATTGAAAGACTTCGACTGAACCTTTTGATACAGGAAGATTATCGGAAGAGTTGAAGACTATTGATTGAGGAAGCAGACAGTTGTATTGAGCATGCAATCTGAATCATGGAGGAGATTAAGCGACTCCGAGCATCTATGCGAACAAGATCCATCAGAAACATGTCATTAACGGATGGCATGGTAGAGAAGGTTACTGATTGTGTTCATTCTACTTTGGGCCTGTTATCCTTTTTACTGGAACCAGATTGAATGAACTGAATTGCTGGTCCCTGGATGCAATAATACTCCCTCGTAGAAGAAAATCATGGTCTTCAATAGTAAATCTTTTGAGCAGTTTTGATGATTTCCATGTTGTATCGATAACACGCAACTTATTTTCTTCCTAGCCAAGTCAGTGTTTTGGCGCGAGCACCATGTTCTATATTAGTTACATCTTTCCTGAGCTGCTCAAAACATTCTAGAAATTCCATCTTTCAGAAATGTGCTAAGCGGTCAAATACCTCGCTAGAGCCTCCGACAACTATGCAAGTCTTGTGATCGCCAGATTCGAATACCACAGAGTGCTTCCACGCATTGAAGCCCTTATCCCTCCCGCCTTTCAGGCGGATCCCCCGGAATCACCATTTGCTTCTGGACCCTTGCTGTTAGACTTCCACCTTCGATTCCCAGATCTGCTCTGAGAAATGAGATGAAAAAAGGACAGAAAGGGCTTATATCAGTGAGGTGCTATGGGGATGAGCTTCTTCGTGCACAGGTTTGGTTTTCTTTGCTGCCTGGTTTTTGTTTTGCTGGTGGATACATGAATATAGATACAGAACTTGGTACTGATCCTTTAACAACTTCCCAGCCCCCCTTGTGAATTCTGGGTCACGGTTGGAAACTAATGACTGTTTGTTTCTTGGTTTCTCTCGGATGTGTAGCAAAGATATAGGATCAATTTTCAGGATTTTTGTTAGAGCCTGCTTGTGACTGTTGCAGATTACACATTGTTTAGTATCTGATTTTTGCTAATAATTTTGAGTTCATTGTGGATATTTTAGGCGTTGATTCGAAAATTCTGTCACGATACAGTTATTTACCACACCTATGAGGATATGATTAAATTGATATGGCTATGATAAGCTACCATTACAAACACCTTGTCTCGCTAATCAGCTGGCAGTCCCCATGCCCTGCCATAAAAAA

mRNA sequence

CGCATGGCCGTGGAAAGTACACCAAACGAGCCATAACTCAATCAACTGTTACTGAAGTCAGGTTTCTCCATGTGGTTCTTTATACGGCGGAGAGAGCATGGAGTCATGCCATGGAGAAAAGGCAATTACCAGAGGTCCAAATGCACGTCAGCGTATCTATTTGATTGGTTAGGCTCAGAAAGGCAGTAAAATGGGCGGACTCTCTTCGCACAATTGTGTGCAAGCAAGGGAGACTCAAGAACATCTTGGAAGCAGAGGCTTATGCATCTTATATGACTGGGAACTTGTTGTTTGAACAAGATCGGAATTGGGACATAGCATTATTGAACTTCAAAAGATCTAGAGCTGTTTATGAGGAACTTGGGAAAGTAGGAGATCTAGAGAATCAAGTTTTGTGCCGTGAACGTGTGGAGGAGCTAGAACCTAGTATAAGATATTGCTTGCACAAGATTGGCAAGTCAAATATCCAGGCCTCTGAACTTCTACATATTGGGGAGATGGAAGGCCCTGCTCTAGACCTTTTCAAAGCTAAACTAGAGGCTGTCATGTCGGAGGCCAGATCTCAGCAGGCCTGTTTCCCATGACGGAGTTTCATTGCTTGGTCATAGGTTTCCAATATCAATGCTAAACAACTAGAGTTTCCATATTGAAAGCTCGGGAAGTTACGAAAAGGATTTGCAAGATCAGCAGATTCACTTCCAGACCAGAAAAAGACTGACGCCATTTTTGATAAAGAATCTTTACAGCATACCATGAGGCAAGGAGCTCATTCGCATGATCTGGTCAGCCGCTGGAAATGCTGAAAAAATGTCAAAGATGATTTAAGTGGGCTTGATAAAGTGTTAGTTGCAGTGTGGCCAAAGGACAATTGAACGCAACCCAGTTATTGTGAAAATCGCAACAAGTAAGCTTGTTAGGGCCGCCACGATGAAAAAAATGAGAAAGTTAACCAAGCCGGAGGAAACTTGTTCCGCTTGTATGATCTCTTATTGCCGAATCTTGCTGAACCTTTCTGATTTAGCAGTTCGGAATAAGAGATAGGAAGCCAGGAAGAAGTGACATTTGCTTGAAGGTGCTCACTGTAAAAGTAATAGCTTTTCGTGGAAAAGCGTGCTTTTACTTCGGCAAAATCATTACCAGTCTGGCTGAAAAAAGAGGCTGAAGCTCCATGTACTTTACTCGCCATGCTCGCCTCCTTGTCGAAGATGCCATACAAAAACTGTCCGTTCGGAAAATAATCAGTGAACCCGGAAGATTATCGGAAGAGTTGAAGACTATTGATTGAGGAAGCAGACAGTTGTATTGAGCATGCAATCTGAATCATGGAGGAGATTAAGCGACTCCGAGCATCTATGCGAACAAGATCCATCAGAAACATGTCATTAACGGATGGCATGGTAGAGAAGAAATGTGCTAAGCGGTCAAATACCTCGCTAGAGCCTCCGACAACTATGCAAGTCTTGTGATCGCCAGATTCGAATACCACAGAGTGCTTCCACGCATTGAAGCCCTTATCCCTCCCGCCTTTCAGGCGGATCCCCCGGAATCACCATTTGCTTCTGGACCCTTGCTGTTAGACTTCCACCTTCGATTCCCAGATCTGCTCTGAGAAATGAGATGAAAAAAGGACAGAAAGGGCTTATATCAGTGAGGTGCTATGGGGATGAGCTTCTTCGTGCACAGGTTTGGTTTTCTTTGCTGCCTGGTTTTTGTTTTGCTGGTGGATACATGAATATAGATACAGAACTTGGTACTGATCCTTTAACAACTTCCCAGCCCCCCTTGTGAATTCTGGGTCACGGTTGGAAACTAATGACTGTTTGTTTCTTGGTTTCTCTCGGATGTGTAGCAAAGATATAGGATCAATTTTCAGGATTTTTGTTAGAGCCTGCTTGTGACTGTTGCAGATTACACATTGTTTAGTATCTGATTTTTGCTAATAATTTTGAGTTCATTGTGGATATTTTAGGCGTTGATTCGAAAATTCTGTCACGATACAGTTATTTACCACACCTATGAGGATATGATTAAATTGATATGGCTATGATAAGCTACCATTACAAACACCTTGTCTCGCTAATCAGCTGGCAGTCCCCATGCCCTGCCATAAAAAA

Coding sequence (CDS)

ATGACTGGGAACTTGTTGTTTGAACAAGATCGGAATTGGGACATAGCATTATTGAACTTCAAAAGATCTAGAGCTGTTTATGAGGAACTTGGGAAAGTAGGAGATCTAGAGAATCAAGTTTTGTGCCGTGAACGTGTGGAGGAGCTAGAACCTAGTATAAGATATTGCTTGCACAAGATTGGCAAGTCAAATATCCAGGCCTCTGAACTTCTACATATTGGGGAGATGGAAGGCCCTGCTCTAGACCTTTTCAAAGCTAAACTAGAGGCTGTCATGTCGGAGGCCAGATCTCAGCAGGCCTGTTTCCCATGA

Protein sequence

MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQACFP
Homology
[Close]
BLAST of Carg25416 vs. NCBI nr
Match: KAG7022116.1 (Signal recognition particle subunit SRP68 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.3 bits (534), Expect = 7.9e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQACFP 104
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQACFP
Sbjct: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQACFP 103

[Close]
BLAST of Carg25416 vs. NCBI nr
Match: XP_022965811.1 (signal recognition particle subunit SRP68-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 201.4 bits (511), Expect = 3.7e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]
BLAST of Carg25416 vs. NCBI nr
Match: XP_023531772.1 (signal recognition particle subunit SRP68-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 3.7e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]
BLAST of Carg25416 vs. NCBI nr
Match: KAG6588218.1 (Signal recognition particle subunit SRP68, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.4 bits (511), Expect = 3.7e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 369 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 428

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 429 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 468

[Close]
BLAST of Carg25416 vs. NCBI nr
Match: XP_022933752.1 (signal recognition particle subunit SRP68-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 201.4 bits (511), Expect = 3.7e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]
BLAST of Carg25416 vs. ExPASy Swiss-Prot
Match: Q00004 (Signal recognition particle subunit SRP68 OS=Canis lupus familiaris OX=9615 GN=SRP68 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.2e-10
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 0 

Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           ++G L FE  + W  A+  F + + +YE+L      E  VL  +RVEE+ P+IRYC + I
Sbjct: 190 LSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNI 249

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           G  +   +EL+ +    G    L   KLEA++++ R++QA
Sbjct: 250 GDQS-AINELMQMRLRSGGTEGLLAEKLEALITQTRAKQA 287

[Close]
BLAST of Carg25416 vs. ExPASy Swiss-Prot
Match: Q9UHB9 (Signal recognition particle subunit SRP68 OS=Homo sapiens OX=9606 GN=SRP68 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 9.2e-10
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 0 

Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           ++G L FE  + W  A+  F + + +YE+L      E  VL  +RVEE+ P+IRYC + I
Sbjct: 193 LSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNI 252

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           G  +   +EL+ +    G    L   KLEA++++ R++QA
Sbjct: 253 GDQS-AINELMQMRLRSGGTEGLLAEKLEALITQTRAKQA 290

[Close]
BLAST of Carg25416 vs. ExPASy Swiss-Prot
Match: Q8BMA6 (Signal recognition particle subunit SRP68 OS=Mus musculus OX=10090 GN=Srp68 PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 0 

Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           ++G L FE  + W  A+  F + + +YE+L      E  VL  +RVEE+ P+IRYC + I
Sbjct: 192 LSGMLRFEH-QEWKSAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNI 251

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           G  +   +EL+ +    G    L   KLEA++++ R++QA
Sbjct: 252 GDQS-AINELMQMRLRSGGTEGLLAEKLEALITQTRAKQA 289

[Close]
BLAST of Carg25416 vs. ExPASy TrEMBL
Match: A0A6J1HQ31 (Signal recognition particle subunit SRP68 OS=Cucurbita maxima OX=3661 GN=LOC111465584 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.8e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]
BLAST of Carg25416 vs. ExPASy TrEMBL
Match: A0A6J1HMP5 (Signal recognition particle subunit SRP68 OS=Cucurbita maxima OX=3661 GN=LOC111465584 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.8e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]
BLAST of Carg25416 vs. ExPASy TrEMBL
Match: A0A6J1F0Q1 (Signal recognition particle subunit SRP68 OS=Cucurbita moschata OX=3662 GN=LOC111441075 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.8e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]
BLAST of Carg25416 vs. ExPASy TrEMBL
Match: A0A6J1F5Q6 (Signal recognition particle subunit SRP68 OS=Cucurbita moschata OX=3662 GN=LOC111441075 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.8e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]
BLAST of Carg25416 vs. ExPASy TrEMBL
Match: A0A0A0M2X1 (Signal recognition particle subunit SRP68 OS=Cucumis sativus OX=3659 GN=Csa_1G627500 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.6e-47
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWD ALLNFKR+RAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDTALLNFKRARAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSN+QASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNLQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]
BLAST of Carg25416 vs. TAIR 10
Match: AT5G61970.1 (signal recognition particle-related / SRP-related )

HSP 1 Score: 170.6 bits (431), Expect = 6.4e-43
Identity = 83/100 (83.00%), Postives = 88/100 (88.00%), Query Frame = 0 

Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           M G LLFEQD+NW+  L  FK +RAVYEELGK GDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 162 MKGTLLFEQDQNWETGLACFKNARAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKI 221

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSN+Q SELL IGEMEGPALDLFKAK+EA M EARSQQA
Sbjct: 222 GKSNLQTSELLQIGEMEGPALDLFKAKIEAAMEEARSQQA 261

The following BLAST results are available for this feature:
BLAST of Carg25416 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022116.17.9e-51100.00Signal recognition particle subunit SRP68 [Cucurbita argyrosperma subsp. argyros... [more]
XP_022965811.13.7e-48100.00signal recognition particle subunit SRP68-like isoform X1 [Cucurbita maxima][more]
XP_023531772.13.7e-48100.00signal recognition particle subunit SRP68-like isoform X2 [Cucurbita pepo subsp.... [more]
KAG6588218.13.7e-48100.00Signal recognition particle subunit SRP68, partial [Cucurbita argyrosperma subsp... [more]
XP_022933752.13.7e-48100.00signal recognition particle subunit SRP68-like isoform X1 [Cucurbita moschata][more]
BLAST of Carg25416 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q000049.2e-1035.00Signal recognition particle subunit SRP68 OS=Canis lupus familiaris OX=9615 GN=S... [more]
Q9UHB99.2e-1035.00Signal recognition particle subunit SRP68 OS=Homo sapiens OX=9606 GN=SRP68 PE=1 ... [more]
Q8BMA61.2e-0935.00Signal recognition particle subunit SRP68 OS=Mus musculus OX=10090 GN=Srp68 PE=1... [more]
BLAST of Carg25416 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HQ311.8e-48100.00Signal recognition particle subunit SRP68 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1HMP51.8e-48100.00Signal recognition particle subunit SRP68 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1F0Q11.8e-48100.00Signal recognition particle subunit SRP68 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1F5Q61.8e-48100.00Signal recognition particle subunit SRP68 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A0A0M2X12.6e-4797.00Signal recognition particle subunit SRP68 OS=Cucumis sativus OX=3659 GN=Csa_1G62... [more]
BLAST of Carg25416 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G61970.16.4e-4383.00signal recognition particle-related / SRP-related [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026258Signal recognition particle subunit SRP68PFAMPF16969SRP68coord: 1..100
e-value: 8.2E-25
score: 87.8
IPR026258Signal recognition particle subunit SRP68PANTHERPTHR12860SIGNAL RECOGNITION PARTICLE 68 KDA PROTEINcoord: 1..99
IPR038253SRP68, N-terminal domain superfamilyGENE3D1.10.3450.40coord: 1..62
e-value: 2.2E-12
score: 49.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25416-RACarg25416-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
cellular_component GO:0005786 signal recognition particle, endoplasmic reticulum targeting
molecular_function GO:0008312 7S RNA binding
molecular_function GO:0030942 endoplasmic reticulum signal peptide binding
molecular_function GO:0005047 signal recognition particle binding
molecular_function GO:0003723 RNA binding