Carg25416 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25416
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Signal recognition particle subunit SRP68
Location	Carg_Chr11: 4386965 .. 4393473 (+)
RNA-Seq Expression	Carg25416
Synteny	Carg25416

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCATGGCCGTGGAAAGTACACCAAACGAGCCATAACTCAATCAACTGTTACTGAAGTCAGGTTTGTCCCATTTAATAGTTTTTTAATGCCGAGAGTAGCATAATTTTGTCGAATATTTACATGTTGCTTCTATACTCGCCCTTTTTTTGTTTGCGCTTCAAAGCAGTCTCCTCCTGTTACTGATTAGAAAAATACTCTAGATATTGTTAACTAGATGGTCAATGATGTCTCCCCTTAATGTACACTGATTCTAATGAAGTGGGGAAGGAAAAAGGAAGGGAAAGAAGATGGCGAAGTGTTAATTTATTTGAGCATTGTCTGTGGCTGTGTTAAATTCAACAAAGTTTAAAACTATCAACCTTCTGGATTTAAAATAGGTTTCTCCATGTGGTTCTTTATACGGCGGAGAGAGCATGGAGTCATGCCATGGAGAAAAGGCAATTACCAGAGGTCCAAATGCACGTCAGCGTATCTATTTGATTGGTTAGGCTCAGAAAGGCAGTAAAATGGGCGGACTCTCTTCGCACAATTGTGTGCAAGCAAGGGAGACTCAAGAACATCTTGGAAGCAGAGGTTTGGTCCTAGTTTTCTTCTTATGGAATATATGTTATATATGATACTCTTTTAACTTCGAAATTTTAGAATTACGTCTTCATGAAGAGTGATTTTTCATAATTTTTTTTTTTTTTTTTTTTTTTGTTTCTCAGCTGATAATTATTTGTTCATATATGTAGGCTTATGCATCTTATATGACTGGGAACTTGTTGTTTGAACAAGATCGGAATTGGGACATAGCATTATTGAACTTCAAAAGATCTAGGTGCTTCCTTGTATTTTCTCGATCTTTAAATTCCTTCTTAGAATGATCAACTAATTCTTGCATTACCTTCTTTTTAAGGGTTAATATGCATTATGCAAAATTTTTTGCTCTATGGATGTTTTACTAGCTATTTTTGTTTATTTATTTATTTTTCTGTCCTCTATATTAGAAAGGTCAAAAATCCCTTTGAGAGATAATGCCACTGTCATACTAGGAAAGTCTGGAAGACTCATTTAGAAGAGACTTTGGGATTGAATTGGGTTTAGTACCTCTATTCAAGCTTTAATTCCCACAAATTTGCATATAAATTGTTTTGATTTAGATGGCTGGTACACTGTGTTGACATCCCGTAATTCTTCCCTCTCCTACTCTTTTCACTGAAAGTAATATTTTGTTCCAACCAAATTTCCCAAAAAATGGCCCTAGAAGCATTAAGTGAAAAAGTTCGCATCTTTTCTTTGAAACTTTTGACCAAAAAGGAGAATATGAATGGCTTTCGTGATCCTTGAAAGTTGGGTAAGCTGACAGCAAAAGGATCATTAAAGCTTCAGTGTGTAATTGCAACTGAGGAAAAGGCGATTAGCATTCTTATTCATACTGTTGAAGATCACCGTAGGATAATGCGAAGACAATTACATATCTATGATGTATACTGTTATCCATTTGTAAAGAATCAAATAATTGTGAAGGATACATCTTATAGCAATAAAATTTGTAAAGCACACTTGATCTCTTAAAGGCCCTGCATTGTTTATCATCTCATTTTGATTTAGATAACATGATTAGCTAATATTATGTTTACCTTTCAGAGCTGTTTATGAGGAACTTGGGAAAGTAGGAGATCTAGAGAATCAAGTTTTGTGCCGTGAACGTGTGGAGGAGCTAGAACCTAGTATAAGATATTGCTTGCACAAGATTGGCAAGTCAAATATCCAGGCCTCTGAACTTCTACATATTGGGGAGATGGAAGGCCCTGCTCTAGACCTTTTCAAAGCTAAACTAGAGGTCTGTTTGCTTGCCTTTTACTTTCAAGTTTATTCATTTATCATTTTTGTTCAGATTCTTATTTATTTGATTTATAAGCATTGCATATACAATGTATTTATGTACGAGCACCATAAATTAAACAATTTTACTGAAAGAGATCTGTCAGCTAACAAAAATCTCAGACTCATATTGGTTTTCACAGTTTATAAGAATTCAATTCTCTTGTTGATTTCGGTGTTTCCTTTTCTGCAAAGTTGTTTTATTGTCAATAAAGTTATCTATTAGTTTTCAAGAAAGCGTTGTTTGAGACTTTGGTTTTGATTTAATTGATTCCAGACCAACTTTTTGCTTTAAAAGTGTTCTGGCTTCAACGAAGTTTTTTTTTATTTAGTTTGGAGAGGTTTTCGCCCAAGGACAAGTTTGAGTTTTTAGACTAGATTCTCTCATCTCCCTTTCTTTTAAGACTTCAGTATAGGCATAGATCTTTGTGGTTAATGGTGGTGGACCTGTGGTTGTTATACCTTCACTTTCTCAATGGAAGCTTGGGTTTTCATAAAAAGAGAAAAAGGTAAAAAGAAAATAAAAACCTTGTATGCTTCATTATTGGTATCCTGACCACGGGTTCTTTTCCCAGTAGTTAGCAGACGAGTAATCTAACAGTAGTTGAAGTCAAGATAGACCAGTTTATCTTAATGTGGATTCAAACAGAGGTTTATCTATAACTGTAGTATACTTGTTATTGATCGTTGTCTATTTGTTGTTAGATAGACCGTAGACCTAAGAACATTGCTTGTTATAGAGAAACATAAGACAACAGATAATCACATGAGAATATCCTTCACACTGCCTACTGCTTGATACATTAAAGTTTCTCAATAATCGTGGCATTGATTTTCTCTTGTTTTCTTGTTTTGGTTAATCTGATAATGTTTTTCACTCTTTTAGTCTATGTAGCGGTCTTAGCTTATTGTTATAATCTTGTACATTCTTGCTCTGTAGGCTGTCATGTCGGAGGCCAGATCTCAGCAGGCCTGTTTCCCATGACGGAGTTTCATTGCTTGGTCATAGGTTTCCAATATCAATGCTAAACAACTAGAGTTTCCATATTGAAAGGTTGGTGATTCGTTTAGCATCGTTTAAATACTGGATAAATATGATGATTTTATTGTGTAGTAACTTAGACTGCTAGTAACCAGAAATTTAATGGCCTGTATCTTATATGCTCCAACAAAGAGGTTGCTTTCCAAACTTATAGATGCAATATTTAGTTTGTCCTTGGTAGAAATCTCCTAAAAAAGATGCGGGGTTGGCGGAACAACGGTTTAACAGTAGAGATGTAAAAGATGACTTCTATAGTGAAGAATACTTCTACTGTATTCTGAATAAGCATGACTACTTTAATCCCTTTCGGTTATTGATTTAATATCTCTGTGGAATTTTCGGGGTGTCCCTATTGCAATCAGTTCTGGGTTTTAGACTGGATGTAGTGGTTGATGGGGGACGGTGAAGACTAACTCAAAATTGCGATGTAATAAGTATTACTCTTTCGCCTATTTGCAATTTTAAAACCAAGAAAATATGCAATCTTAATGGAGAACCCGTCTAGTAGGCAAAAGTTAATACCTCAATCGAATTGGGGAGGGGGCGAAAAGAGAACACTCCCAACTCCTTGCTTCCGAAAGGAAATACTAAAGGCCATCAGCTGTACTTTCTTATATTTTACTTGATCTAATGAAAGGTTTACTACTTTCCCCCTGTTAAATTTTCTCTCTTTATCTTAATTAATTGGCGAGTGTTCTGTTGCTATCATCTTTCTTCTTTCCGATTGCGATAACTTCCCACCTGAATTCTCATTTTATTTTAAGGTTGCTTACAAATGATATGTATGTTCACAGGACGTTTGACTTGTATCTAGAGTTCACCTCGGACTTTTTATGATTGCTTACACCGAAGTGTTTGGCACTAGATAAAGTTAGTGAAGGTATAGTTCGTAAACCTATTTTCCTGTAGGAATTCCTTTATTATGTTGTATTGCTAGAATCTGTCGAAGGCATGCACCTACCATTCAGGTTCATATTTTTCACTTTTAAAGTCATCCAGAATCGCATAATTATGTCTGCTCATGTAAATTAATCCTAGCTCGGGAAGTTACGAAAAGGATTTGCAAGATCAGCAGATTCACTTCCAGACCAGAAAAAGACTGACGCCATTTTTGATAAAGAATCTTTACAGCATACCATGAGGCAAGGAGCTCATTCGCATGATCTGGTATGTGGAAGATTGACATGTAGACTTCCTTTGAATTGTTCTAGAGTTTTGCATCTCTACTAATTCGATCTTCCAGACTTATGTTTGCCAGTGTTCTGTTTGAGTTAGGTCAGCCGCTGGAAATGCTGAAAAAATGTCAAAGATGATTTAAGTGGGCTTGATAAAGTGTTAGTTGCAGTGTGGCCAAAGGACAATTGAACGCAACCCAGTTATTGTGAAAATCGCAACAAGTAAGCTTGTTAGGGCCGCCACGATGAAAAAAATGAGAAAGTTAACCAAGCCGGAGGAAACTTGTTCCGCTTGTATGATCTCTTTCAGTTCAACAAGTTAAGCTAGTTTTATGTATTTCTCTTATACTTCCTCTTTTCGTGTTCTGTCATTGATTGCTCGACCACAATCTAGAGGTTTTTCAGAGTTAGTCAATTTAGCTTTTCTAGCAAGTTATAGTTATTGAGTTATTATTATTATTATTGCCGAATCTTGCTGAACCTTTCTGATTTAGCAGTTCGGAATAAGAGATAGGAAGCCAGGAAGAAGTGACATTTGCTTGAAGGTGCTCACTGTAAAAGTAATAGCTTTTCGTGGAAAAGCGTTTCTCTCCTGAATATTACTTTATCTTTCTATTCTGATCAGAACAGCCTCCATATTCTACAAGTTATGAGTCTAGCATTTTGCATTCTAAACTTTCTGTTCCTGTTGCTTTCGTAATTAATGTGAAACTATTTGCTCATAATGCGCTATATCCCGAGACCATGTTCCTTGAGCCTCATAACGCCTTGCCTTTAGCTGTATTCCCGCCACCTTCGTTGTTGTTTTTACATTCCCTTTCCTTCATACTTCGTTACCTGCCACGCTTGTATTATGCCCTGGCAACATAAAGTTGTCATTACTCACTCAACTTATGACTAGCTGTTGTCATAGATTATTTTTGTCTTTTGTTCTTGATAGTTGTCATTACTTCACCTCAATTATGGATTAATTGATGTTTGCTGAGCACTAATTTACCGTATGATGGGTCGATCCTCTAACTGATATTTTCAGGTGCTTTTACTTCGGCAAAATCATTACCAGTCTGGCTGAAAAAAGAGGCTGAAGCTCCATGTACTTTACTCGCCATGCTCGCCTCCTTGTCGAAGATGCCATACAAAAACTGTCCGTTCGGAAAATAATCAGTGAACCCGGTATGTGTATCATATGAGAATAGTCTGGTATCATACTGGTCAGGAGTCTGGACTTTTTGCAAGTAACATTGAAAGACTTCGACTGAACCTTTTGATACAGGAAGATTATCGGAAGAGTTGAAGACTATTGATTGAGGAAGCAGACAGTTGTATTGAGCATGCAATCTGAATCATGGAGGAGATTAAGCGACTCCGAGCATCTATGCGAACAAGATCCATCAGAAACATGTCATTAACGGATGGCATGGTAGAGAAGGTTACTGATTGTGTTCATTCTACTTTGGGCCTGTTATCCTTTTTACTGGAACCAGATTGAATGAACTGAATTGCTGGTCCCTGGATGCAATAATACTCCCTCGTAGAAGAAAATCATGGTCTTCAATAGTAAATCTTTTGAGCAGTTTTGATGATTTCCATGTTGTATCGATAACACGCAACTTATTTTCTTCCTAGCCAAGTCAGTGTTTTGGCGCGAGCACCATGTTCTATATTAGTTACATCTTTCCTGAGCTGCTCAAAACATTCTAGAAATTCCATCTTTCAGAAATGTGCTAAGCGGTCAAATACCTCGCTAGAGCCTCCGACAACTATGCAAGTCTTGTGATCGCCAGATTCGAATACCACAGAGTGCTTCCACGCATTGAAGCCCTTATCCCTCCCGCCTTTCAGGCGGATCCCCCGGAATCACCATTTGCTTCTGGACCCTTGCTGTTAGACTTCCACCTTCGATTCCCAGATCTGCTCTGAGAAATGAGATGAAAAAAGGACAGAAAGGGCTTATATCAGTGAGGTGCTATGGGGATGAGCTTCTTCGTGCACAGGTTTGGTTTTCTTTGCTGCCTGGTTTTTGTTTTGCTGGTGGATACATGAATATAGATACAGAACTTGGTACTGATCCTTTAACAACTTCCCAGCCCCCCTTGTGAATTCTGGGTCACGGTTGGAAACTAATGACTGTTTGTTTCTTGGTTTCTCTCGGATGTGTAGCAAAGATATAGGATCAATTTTCAGGATTTTTGTTAGAGCCTGCTTGTGACTGTTGCAGATTACACATTGTTTAGTATCTGATTTTTGCTAATAATTTTGAGTTCATTGTGGATATTTTAGGCGTTGATTCGAAAATTCTGTCACGATACAGTTATTTACCACACCTATGAGGATATGATTAAATTGATATGGCTATGATAAGCTACCATTACAAACACCTTGTCTCGCTAATCAGCTGGCAGTCCCCATGCCCTGCCATAAAAAA

mRNA sequence

CGCATGGCCGTGGAAAGTACACCAAACGAGCCATAACTCAATCAACTGTTACTGAAGTCAGGTTTCTCCATGTGGTTCTTTATACGGCGGAGAGAGCATGGAGTCATGCCATGGAGAAAAGGCAATTACCAGAGGTCCAAATGCACGTCAGCGTATCTATTTGATTGGTTAGGCTCAGAAAGGCAGTAAAATGGGCGGACTCTCTTCGCACAATTGTGTGCAAGCAAGGGAGACTCAAGAACATCTTGGAAGCAGAGGCTTATGCATCTTATATGACTGGGAACTTGTTGTTTGAACAAGATCGGAATTGGGACATAGCATTATTGAACTTCAAAAGATCTAGAGCTGTTTATGAGGAACTTGGGAAAGTAGGAGATCTAGAGAATCAAGTTTTGTGCCGTGAACGTGTGGAGGAGCTAGAACCTAGTATAAGATATTGCTTGCACAAGATTGGCAAGTCAAATATCCAGGCCTCTGAACTTCTACATATTGGGGAGATGGAAGGCCCTGCTCTAGACCTTTTCAAAGCTAAACTAGAGGCTGTCATGTCGGAGGCCAGATCTCAGCAGGCCTGTTTCCCATGACGGAGTTTCATTGCTTGGTCATAGGTTTCCAATATCAATGCTAAACAACTAGAGTTTCCATATTGAAAGCTCGGGAAGTTACGAAAAGGATTTGCAAGATCAGCAGATTCACTTCCAGACCAGAAAAAGACTGACGCCATTTTTGATAAAGAATCTTTACAGCATACCATGAGGCAAGGAGCTCATTCGCATGATCTGGTCAGCCGCTGGAAATGCTGAAAAAATGTCAAAGATGATTTAAGTGGGCTTGATAAAGTGTTAGTTGCAGTGTGGCCAAAGGACAATTGAACGCAACCCAGTTATTGTGAAAATCGCAACAAGTAAGCTTGTTAGGGCCGCCACGATGAAAAAAATGAGAAAGTTAACCAAGCCGGAGGAAACTTGTTCCGCTTGTATGATCTCTTATTGCCGAATCTTGCTGAACCTTTCTGATTTAGCAGTTCGGAATAAGAGATAGGAAGCCAGGAAGAAGTGACATTTGCTTGAAGGTGCTCACTGTAAAAGTAATAGCTTTTCGTGGAAAAGCGTGCTTTTACTTCGGCAAAATCATTACCAGTCTGGCTGAAAAAAGAGGCTGAAGCTCCATGTACTTTACTCGCCATGCTCGCCTCCTTGTCGAAGATGCCATACAAAAACTGTCCGTTCGGAAAATAATCAGTGAACCCGGAAGATTATCGGAAGAGTTGAAGACTATTGATTGAGGAAGCAGACAGTTGTATTGAGCATGCAATCTGAATCATGGAGGAGATTAAGCGACTCCGAGCATCTATGCGAACAAGATCCATCAGAAACATGTCATTAACGGATGGCATGGTAGAGAAGAAATGTGCTAAGCGGTCAAATACCTCGCTAGAGCCTCCGACAACTATGCAAGTCTTGTGATCGCCAGATTCGAATACCACAGAGTGCTTCCACGCATTGAAGCCCTTATCCCTCCCGCCTTTCAGGCGGATCCCCCGGAATCACCATTTGCTTCTGGACCCTTGCTGTTAGACTTCCACCTTCGATTCCCAGATCTGCTCTGAGAAATGAGATGAAAAAAGGACAGAAAGGGCTTATATCAGTGAGGTGCTATGGGGATGAGCTTCTTCGTGCACAGGTTTGGTTTTCTTTGCTGCCTGGTTTTTGTTTTGCTGGTGGATACATGAATATAGATACAGAACTTGGTACTGATCCTTTAACAACTTCCCAGCCCCCCTTGTGAATTCTGGGTCACGGTTGGAAACTAATGACTGTTTGTTTCTTGGTTTCTCTCGGATGTGTAGCAAAGATATAGGATCAATTTTCAGGATTTTTGTTAGAGCCTGCTTGTGACTGTTGCAGATTACACATTGTTTAGTATCTGATTTTTGCTAATAATTTTGAGTTCATTGTGGATATTTTAGGCGTTGATTCGAAAATTCTGTCACGATACAGTTATTTACCACACCTATGAGGATATGATTAAATTGATATGGCTATGATAAGCTACCATTACAAACACCTTGTCTCGCTAATCAGCTGGCAGTCCCCATGCCCTGCCATAAAAAA

Coding sequence (CDS)

ATGACTGGGAACTTGTTGTTTGAACAAGATCGGAATTGGGACATAGCATTATTGAACTTCAAAAGATCTAGAGCTGTTTATGAGGAACTTGGGAAAGTAGGAGATCTAGAGAATCAAGTTTTGTGCCGTGAACGTGTGGAGGAGCTAGAACCTAGTATAAGATATTGCTTGCACAAGATTGGCAAGTCAAATATCCAGGCCTCTGAACTTCTACATATTGGGGAGATGGAAGGCCCTGCTCTAGACCTTTTCAAAGCTAAACTAGAGGCTGTCATGTCGGAGGCCAGATCTCAGCAGGCCTGTTTCCCATGA

Protein sequence

MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQACFP

Homology

[Close]

BLAST of Carg25416 vs. NCBI nr
Match: KAG7022116.1 (Signal recognition particle subunit SRP68 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.3 bits (534), Expect = 7.9e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQACFP 104
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQACFP
Sbjct: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQACFP 103

[Close]

BLAST of Carg25416 vs. NCBI nr
Match: XP_022965811.1 (signal recognition particle subunit SRP68-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 201.4 bits (511), Expect = 3.7e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]

BLAST of Carg25416 vs. NCBI nr
Match: XP_023531772.1 (signal recognition particle subunit SRP68-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 3.7e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]

BLAST of Carg25416 vs. NCBI nr
Match: KAG6588218.1 (Signal recognition particle subunit SRP68, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.4 bits (511), Expect = 3.7e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 369 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 428

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 429 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 468

[Close]

BLAST of Carg25416 vs. NCBI nr
Match: XP_022933752.1 (signal recognition particle subunit SRP68-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 201.4 bits (511), Expect = 3.7e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]

BLAST of Carg25416 vs. ExPASy Swiss-Prot
Match: Q00004 (Signal recognition particle subunit SRP68 OS=Canis lupus familiaris OX=9615 GN=SRP68 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.2e-10
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           ++G L FE  + W  A+  F + + +YE+L      E  VL  +RVEE+ P+IRYC + I
Sbjct: 190 LSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNI 249

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           G  +   +EL+ +    G    L   KLEA++++ R++QA
Sbjct: 250 GDQS-AINELMQMRLRSGGTEGLLAEKLEALITQTRAKQA 287

[Close]

BLAST of Carg25416 vs. ExPASy Swiss-Prot
Match: Q9UHB9 (Signal recognition particle subunit SRP68 OS=Homo sapiens OX=9606 GN=SRP68 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 9.2e-10
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           ++G L FE  + W  A+  F + + +YE+L      E  VL  +RVEE+ P+IRYC + I
Sbjct: 193 LSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNI 252

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           G  +   +EL+ +    G    L   KLEA++++ R++QA
Sbjct: 253 GDQS-AINELMQMRLRSGGTEGLLAEKLEALITQTRAKQA 290

[Close]

BLAST of Carg25416 vs. ExPASy Swiss-Prot
Match: Q8BMA6 (Signal recognition particle subunit SRP68 OS=Mus musculus OX=10090 GN=Srp68 PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           ++G L FE  + W  A+  F + + +YE+L      E  VL  +RVEE+ P+IRYC + I
Sbjct: 192 LSGMLRFEH-QEWKSAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNI 251

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           G  +   +EL+ +    G    L   KLEA++++ R++QA
Sbjct: 252 GDQS-AINELMQMRLRSGGTEGLLAEKLEALITQTRAKQA 289

[Close]

BLAST of Carg25416 vs. ExPASy TrEMBL
Match: A0A6J1HQ31 (Signal recognition particle subunit SRP68 OS=Cucurbita maxima OX=3661 GN=LOC111465584 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.8e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]

BLAST of Carg25416 vs. ExPASy TrEMBL
Match: A0A6J1HMP5 (Signal recognition particle subunit SRP68 OS=Cucurbita maxima OX=3661 GN=LOC111465584 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.8e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]

BLAST of Carg25416 vs. ExPASy TrEMBL
Match: A0A6J1F0Q1 (Signal recognition particle subunit SRP68 OS=Cucurbita moschata OX=3662 GN=LOC111441075 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.8e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]

BLAST of Carg25416 vs. ExPASy TrEMBL
Match: A0A6J1F5Q6 (Signal recognition particle subunit SRP68 OS=Cucurbita moschata OX=3662 GN=LOC111441075 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.8e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

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BLAST of Carg25416 vs. ExPASy TrEMBL
Match: A0A0A0M2X1 (Signal recognition particle subunit SRP68 OS=Cucumis sativus OX=3659 GN=Csa_1G627500 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.6e-47
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWD ALLNFKR+RAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDTALLNFKRARAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSN+QASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNLQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]

BLAST of Carg25416 vs. TAIR 10
Match: AT5G61970.1 (signal recognition particle-related / SRP-related )

HSP 1 Score: 170.6 bits (431), Expect = 6.4e-43
Identity = 83/100 (83.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           M G LLFEQD+NW+  L  FK +RAVYEELGK GDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 162 MKGTLLFEQDQNWETGLACFKNARAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKI 221

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSN+Q SELL IGEMEGPALDLFKAK+EA M EARSQQA
Sbjct: 222 GKSNLQTSELLQIGEMEGPALDLFKAKIEAAMEEARSQQA 261

The following BLAST results are available for this feature:

BLAST of Carg25416 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022116.1	7.9e-51	100.00	Signal recognition particle subunit SRP68 [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022965811.1	3.7e-48	100.00	signal recognition particle subunit SRP68-like isoform X1 [Cucurbita maxima]	[more]
XP_023531772.1	3.7e-48	100.00	signal recognition particle subunit SRP68-like isoform X2 [Cucurbita pepo subsp....	[more]
KAG6588218.1	3.7e-48	100.00	Signal recognition particle subunit SRP68, partial [Cucurbita argyrosperma subsp...	[more]
XP_022933752.1	3.7e-48	100.00	signal recognition particle subunit SRP68-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg25416 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00004	9.2e-10	35.00	Signal recognition particle subunit SRP68 OS=Canis lupus familiaris OX=9615 GN=S...	[more]
Q9UHB9	9.2e-10	35.00	Signal recognition particle subunit SRP68 OS=Homo sapiens OX=9606 GN=SRP68 PE=1 ...	[more]
Q8BMA6	1.2e-09	35.00	Signal recognition particle subunit SRP68 OS=Mus musculus OX=10090 GN=Srp68 PE=1...	[more]

BLAST of Carg25416 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQ31	1.8e-48	100.00	Signal recognition particle subunit SRP68 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1HMP5	1.8e-48	100.00	Signal recognition particle subunit SRP68 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1F0Q1	1.8e-48	100.00	Signal recognition particle subunit SRP68 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1F5Q6	1.8e-48	100.00	Signal recognition particle subunit SRP68 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A0A0M2X1	2.6e-47	97.00	Signal recognition particle subunit SRP68 OS=Cucumis sativus OX=3659 GN=Csa_1G62...	[more]

BLAST of Carg25416 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61970.1	6.4e-43	83.00	signal recognition particle-related / SRP-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026258	Signal recognition particle subunit SRP68	PFAM	PF16969	SRP68	coord: 1..100 e-value: 8.2E-25 score: 87.8
IPR026258	Signal recognition particle subunit SRP68	PANTHER	PTHR12860	SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN	coord: 1..99
IPR038253	SRP68, N-terminal domain superfamily	GENE3D	1.10.3450.40		coord: 1..62 e-value: 2.2E-12 score: 49.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25416-RA	Carg25416-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
molecular_function	GO:0008312	7S RNA binding
molecular_function	GO:0030942	endoplasmic reticulum signal peptide binding
molecular_function	GO:0005047	signal recognition particle binding
molecular_function	GO:0003723	RNA binding