Carg25288 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGTCGTTCTCTTCCACCTTCTTACATTCTTTCTCAATCCCCAAATGCCCCATTTCTTCTTCTTCTTCTTCCTCACTGCCCACGTCCAGAGATTCTGCCGCTACTTCTCAACTTCCTACCGGAATTCGACTCCGGAGAGGCGGCGCCGATCGGGTTTTGGACTCGAAATCCATCGTCGTTTTGCTCGGCACTGGTTTCACTCTCTCCCTTCTTGGACCTGCATTGCCTTCTGCTGCGACGGAATTCCAGTCTTCGCTTCTGTTTAACGAGCCCCAAAATGCTCTGTCCTTGCCCACCTGGGCCGTACATGTTTCCATCGTCGTTGAATGGTGAGGATTTGTCAATCTGTTTTGTAATGATTTCTTGAAATGGAATTTGTTCGATGTTTTTTTTTTTTTTTTCCCAGAAATTTCCCTAGTTATCATCTTCAACGTGCTTGTAAGAAGTGATAATCTCTCCAAATTCATGAGAAGTTCGACTAAATTTTAGAGAGAAGTGTAGGAATGTTGCTGAAAATTTTGTCCAAAATGCTTAGATGCTATGCTAAACGGTATGGTAGGGAGGGAGTCTCGTCTTGGTTAATTTAGGGAATGATCATGGGTTTATAAGTAAGGAATACATCTCTATTGGTACGAGGTGTTTTAGGGAAGTCCAAAGCAAAGTCAAGAGAGCTTATTCTCAAAGTGGACAATATTATATCATTGTGGAGAGTCGTGATTCCTAACATGGTATCAGAGTCATGCCATGTTGCTAGCCTCGAAGGTCGAACAAAGACGTTGCTAGCCTCGAACTTAACCATGTTAATAGAATCCTCAAGTGTCGAACAAAGACGTTGCTAGCCTCGAAGGTGTAGTCAAAAGTGATTCAAGTGTCGAACAAACGGTGTACTTTGTTTGAGTGCTCCAGAGAAAGGAGTCAAGTCTCGATTAAGGGGAGGTTGTTTGAGGGCTCCATAGGCCTCAGGGGAGACTCTGTAGTATACTTTGTTCAAAGAGAGGATTATTGGGATAGAGTCCCACATTGGCTAATTTAGGGAATGATGATGGGTTTATAAGTAAGAAATATATCTCTATTGATATGAGGACTTTTGGGGAAGCCCAAAGCAAAGCCACGAGAGTTTATGCTCAAAGTGATATCATACCATTATGGAGAGTTGTGATTCCTAACAACTACTATATTTATAATAGGTTAGAGTATACTCAATCTTTAATCTTTTATAATTCACAAAGTGTTGTTTAATTATTTCCATGGAAATAGACTCTGCATTTTAGTTACCCATTTGATGAATAAGAAATTAAAGGAAAAGGAAGAATGATAAACCAAGCAATTCATATGCTGCTGCTGGCTAGCTTGGTTCATAATTTGTTCATCACAAGTCTTGTGTCGTAAGGATTGCAGCAATGGCTTTGGTGTGGCAGTATGGAGAGAAATCTGGCAATGAGTCTTGGAAAGGACTTTCTTGGGGAATGGTAAGTTCCTTTTCTGTCTATAATTGCCTTTTCATCTATCTTCTCCCATCCACTTATTTATGTAACTTGAGCAGGTACCCTTGCTAGGTGGAGCATTTTGTGCTTGCACATTGCATTTTTTCTACAATTCTGAGTCTCTTGAGGTATAGTAAGTTTCTGTTTTTGCAAGATCTTGCTGGACGTAATGAAATGACTGATAGTGTTCGTATATTCTAAATAATGCGTACGAATTTTTAATCCAGTTCTTGATCATGATGATTTGTTAAAGTTCTTAGCTGATATAGTTTAGCTTCTTTCAATTATGCTCAGGATGGAATTTAGACCATTTCAGTGTAGTTTGATTAAACTCTTCAATTTAGTCCTAAAAGAAACCATTGATTAGGAAGCTTTGGCTCTCGACGTAATGGTATGAACACTGCCTGTTATTGATATTTTAAGGGTAATTATCAGTACCAAACCTTAACAAAACAGCCAAAAGATGCCCCCCTCGCTTACGCTGCACAAGTACCCTCTCTACCCCTTAGATACCGTCATTGCTTCTTTTCCGGGAAAAAAAGTTCACAACCCGTAGGCCTTCTACCTCCACGCGACATTGCTCTGTCAAGCTTTCGCTTGAGTCCTTGGTACTCATGACAAACTTCTCTTCCTAGCAAACTCTCCCCTGCAGCCACGTATACTCCCCGCCTCTATATCGCTTCGGAAATTCTTAATTGGGGGTCTATGACTATGTCCATCGTTGTTTTGGGTTTTCAATTCTATCCTTGAACTGTGATCATAAGGAGAATCAACTTCTTGCTGCTTGTTTTGTTATCAATCAGGACTCTGAGTTCCTACTCCTATCTTGAAATTTTGTTACCGAGCAACTGTTTCTTCTATTTCGGTTTCATGTTCAGTCAAGTATTTGAACCGGCATGGAAGTCCTCAAATTATGAATTTCTCACGGTGCAGTTTGTTTAAAAAAAAAACTAAACTAAGAACACCTAGAAGAGGAAGTGCTCCCATTTTTATCTTCATTGCTTGAATTGCAGCATCAGATACATGTTTGCAAAGTATCCAAATTTGTTAGTATCTGCTGGATGGCATTAGTTTTGTGCATCAAATTTGACTTGTTCTTCATATTGTGCTCAATGATGGTGGGGAAGAATGCAAAAGAATTAGGGATTGATTTCTATTTGAGATGAATTGAAATTTTCTTGGTTTCGATTGAGTTGTTTTATTTTTTCTTAAATACCAATTATTTAGTATGATTCATGGTTATTGTTTCTGAAAATTAATAGATGTGAAGAAAACTTCCGATCATTTCCCTTCCTCTACTTTGCTTCACTCTGCCATAAGTTTCTTTCAAATTACTTCCAACATAACCATTTGTTGTGTAATCACGCAAGTATTTTCCGGATGTCACATATGATTGTGAACAGCTTGAGGAAGTAAAACTGATCCAAATTGATCTCTCTCTGGGTTTAGGTTGATAGTATTCCAATTATATTGGCTGAAGTTTCAAAAGAACAAGAACAACCTTACTGTGAAAACCAGATCTTTTTCTTACTCTCACTATAAGGATATAGACTACCTCAGTACCTCTTGTTAGGAACCACGAACCTTCACAATGGTATAATATTGTCCACTTTGAGCATAAGCTCTCGTGACTTTACTTTTGGTTTCCCCAAAAGGCCTCATACCAATGGAGATGTATTCCTTACTTATAAACCCATGATCAACCCCTTAATTAGCCGATATGGGACTCCTCTCCCAACAATTCTCAACAATCCTCCTCTCGAATAAAGTACACCATAGAGCCTCCCCTGAGGCCTATGAAGCACTCGAACAAAGTACACCTTTGTTCGACACTTAAGTCATTTTTTACTACATCTTTGAGGCTCACAACTTCTTTGTTCGACATCTGAGGATTCTAATTATATGGCTAAGTTAAGAGAATGACTCTGATACCATATTAGGAACCACAAACCTCCACAATGGTATGATATTGCCCACTTTGAACATAAGCTCTCATGGCTTTGCTTTTGGTTTTCCCAAAAGGCCTCATACCAATGGAGATGTATTCCCTATAAACTCATGATCAACCCCTTAATTAGCCGATATGAGACTCCTCTCCCAACAATTCTCAACACCTCTCTCTCTCTTTAGAAGAAACTGAACCAAGCTTATCTCTGTTCTGGGTTTAGGTTGACTGGATTCAGATTCCATTGCTGTTGTTTCAAAAGAACAAGGCAGACTTACCATGAAAAGAATAAACAACCTCTCTTTCTCTTTCACTCTTCAATTTGATAAGTTCTTGTTTGTCAAGAAATTTTGTTGTGGTAGTGCAGTTCTCACTCTGAAAAGGATATAAAATGACTTGGATTTGGTGTTGAGTGCAGGTATTGGTGGCCCTTCAGGCAATGCTAACGGTTATAGGAAATGCTACAATGTGCATTGCTGCATTTCGCATATACAAATCATCACAAGAGCGTTCAAAGAACTTGTAA ATGATGTCGTTCTCTTCCACCTTCTTACATTCTTTCTCAATCCCCAAATGCCCCATTTCTTCTTCTTCTTCTTCCTCACTGCCCACGTCCAGAGATTCTGCCGCTACTTCTCAACTTCCTACCGGAATTCGACTCCGGAGAGGCGGCGCCGATCGGGTTTTGGACTCGAAATCCATCGTCGTTTTGCTCGGCACTGGTTTCACTCTCTCCCTTCTTGGACCTGCATTGCCTTCTGCTGCGACGGAATTCCAGTCTTCGCTTCTGTTTAACGAGCCCCAAAATGCTCTGTCCTTGCCCACCTGGGCCGTACATGTTTCCATCGTCGTTGAATGGATTGCAGCAATGGCTTTGGTGTGGCAGTATGGAGAGAAATCTGGCAATGAGTCTTGGAAAGGACTTTCTTGGGGAATGGTACCCTTGCTAGGTGGAGCATTTTGTGCTTGCACATTGCATTTTTTCTACAATTCTGAGTCTCTTGAGGTATTGGTGGCCCTTCAGGCAATGCTAACGGTTATAGGAAATGCTACAATGTGCATTGCTGCATTTCGCATATACAAATCATCACAAGAGCGTTCAAAGAACTTGTAA ATGATGTCGTTCTCTTCCACCTTCTTACATTCTTTCTCAATCCCCAAATGCCCCATTTCTTCTTCTTCTTCTTCCTCACTGCCCACGTCCAGAGATTCTGCCGCTACTTCTCAACTTCCTACCGGAATTCGACTCCGGAGAGGCGGCGCCGATCGGGTTTTGGACTCGAAATCCATCGTCGTTTTGCTCGGCACTGGTTTCACTCTCTCCCTTCTTGGACCTGCATTGCCTTCTGCTGCGACGGAATTCCAGTCTTCGCTTCTGTTTAACGAGCCCCAAAATGCTCTGTCCTTGCCCACCTGGGCCGTACATGTTTCCATCGTCGTTGAATGGATTGCAGCAATGGCTTTGGTGTGGCAGTATGGAGAGAAATCTGGCAATGAGTCTTGGAAAGGACTTTCTTGGGGAATGGTACCCTTGCTAGGTGGAGCATTTTGTGCTTGCACATTGCATTTTTTCTACAATTCTGAGTCTCTTGAGGTATTGGTGGCCCTTCAGGCAATGCTAACGGTTATAGGAAATGCTACAATGTGCATTGCTGCATTTCGCATATACAAATCATCACAAGAGCGTTCAAAGAACTTGTAA MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL Homology
BLAST of Carg25288 vs. NCBI nr
Match: KAG7015633.1 (hypothetical protein SDJN02_23270, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 375.6 bits (963), Expect = 2.7e-100 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
BLAST of Carg25288 vs. NCBI nr
Match: KAG6577584.1 (hypothetical protein SDJN03_25158, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 373.6 bits (958), Expect = 1.0e-99 Identity = 194/195 (99.49%), Postives = 194/195 (99.49%), Query Frame = 0
BLAST of Carg25288 vs. NCBI nr
Match: XP_022923292.1 (uncharacterized protein LOC111431033 [Cucurbita moschata]) HSP 1 Score: 357.5 bits (916), Expect = 7.6e-95 Identity = 188/195 (96.41%), Postives = 190/195 (97.44%), Query Frame = 0
BLAST of Carg25288 vs. NCBI nr
Match: XP_023551730.1 (uncharacterized protein LOC111809617 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 354.4 bits (908), Expect = 6.4e-94 Identity = 185/194 (95.36%), Postives = 187/194 (96.39%), Query Frame = 0
BLAST of Carg25288 vs. NCBI nr
Match: XP_022965189.1 (uncharacterized protein LOC111465121 [Cucurbita maxima] >XP_022965190.1 uncharacterized protein LOC111465121 [Cucurbita maxima] >XP_022965191.1 uncharacterized protein LOC111465121 [Cucurbita maxima]) HSP 1 Score: 350.1 bits (897), Expect = 1.2e-92 Identity = 186/201 (92.54%), Postives = 188/201 (93.53%), Query Frame = 0
BLAST of Carg25288 vs. ExPASy Swiss-Prot
Match: Q55720 (Ycf49-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll0608 PE=3 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 7.0e-27 Identity = 58/99 (58.59%), Postives = 73/99 (73.74%), Query Frame = 0
BLAST of Carg25288 vs. ExPASy Swiss-Prot
Match: P15811 (Uncharacterized protein ycf49 OS=Cyanophora paradoxa OX=2762 GN=ycf49 PE=3 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 4.3e-08 Identity = 36/101 (35.64%), Postives = 50/101 (49.50%), Query Frame = 0
BLAST of Carg25288 vs. ExPASy TrEMBL
Match: A0A6J1E5R7 (uncharacterized protein LOC111431033 OS=Cucurbita moschata OX=3662 GN=LOC111431033 PE=4 SV=1) HSP 1 Score: 357.5 bits (916), Expect = 3.7e-95 Identity = 188/195 (96.41%), Postives = 190/195 (97.44%), Query Frame = 0
BLAST of Carg25288 vs. ExPASy TrEMBL
Match: A0A6J1HN17 (uncharacterized protein LOC111465121 OS=Cucurbita maxima OX=3661 GN=LOC111465121 PE=4 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 5.8e-93 Identity = 186/201 (92.54%), Postives = 188/201 (93.53%), Query Frame = 0
BLAST of Carg25288 vs. ExPASy TrEMBL
Match: A0A6J1DH09 (uncharacterized protein LOC111020415 OS=Momordica charantia OX=3673 GN=LOC111020415 PE=4 SV=1) HSP 1 Score: 292.0 bits (746), Expect = 1.9e-75 Identity = 160/199 (80.40%), Postives = 169/199 (84.92%), Query Frame = 0
BLAST of Carg25288 vs. ExPASy TrEMBL
Match: A0A1S3BLS2 (ycf49-like protein OS=Cucumis melo OX=3656 GN=LOC103490947 PE=4 SV=1) HSP 1 Score: 285.8 bits (730), Expect = 1.4e-73 Identity = 151/194 (77.84%), Postives = 161/194 (82.99%), Query Frame = 0
BLAST of Carg25288 vs. ExPASy TrEMBL
Match: A0A6J1KVA7 (uncharacterized protein LOC111498507 OS=Cucurbita maxima OX=3661 GN=LOC111498507 PE=4 SV=1) HSP 1 Score: 283.1 bits (723), Expect = 8.8e-73 Identity = 158/202 (78.22%), Postives = 169/202 (83.66%), Query Frame = 0
BLAST of Carg25288 vs. TAIR 10
Match: AT4G22830.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634). ) HSP 1 Score: 175.6 bits (444), Expect = 3.8e-44 Identity = 97/163 (59.51%), Postives = 111/163 (68.10%), Query Frame = 0
BLAST of Carg25288 vs. TAIR 10
Match: AT4G22830.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). ) HSP 1 Score: 172.9 bits (437), Expect = 2.5e-43 Identity = 107/191 (56.02%), Postives = 121/191 (63.35%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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