Carg25288 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25288
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ycf49-like protein
Location	Carg_Chr16: 8332889 .. 8336846 (+)
RNA-Seq Expression	Carg25288
Synteny	Carg25288

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTCGTTCTCTTCCACCTTCTTACATTCTTTCTCAATCCCCAAATGCCCCATTTCTTCTTCTTCTTCTTCCTCACTGCCCACGTCCAGAGATTCTGCCGCTACTTCTCAACTTCCTACCGGAATTCGACTCCGGAGAGGCGGCGCCGATCGGGTTTTGGACTCGAAATCCATCGTCGTTTTGCTCGGCACTGGTTTCACTCTCTCCCTTCTTGGACCTGCATTGCCTTCTGCTGCGACGGAATTCCAGTCTTCGCTTCTGTTTAACGAGCCCCAAAATGCTCTGTCCTTGCCCACCTGGGCCGTACATGTTTCCATCGTCGTTGAATGGTGAGGATTTGTCAATCTGTTTTGTAATGATTTCTTGAAATGGAATTTGTTCGATGTTTTTTTTTTTTTTTTCCCAGAAATTTCCCTAGTTATCATCTTCAACGTGCTTGTAAGAAGTGATAATCTCTCCAAATTCATGAGAAGTTCGACTAAATTTTAGAGAGAAGTGTAGGAATGTTGCTGAAAATTTTGTCCAAAATGCTTAGATGCTATGCTAAACGGTATGGTAGGGAGGGAGTCTCGTCTTGGTTAATTTAGGGAATGATCATGGGTTTATAAGTAAGGAATACATCTCTATTGGTACGAGGTGTTTTAGGGAAGTCCAAAGCAAAGTCAAGAGAGCTTATTCTCAAAGTGGACAATATTATATCATTGTGGAGAGTCGTGATTCCTAACATGGTATCAGAGTCATGCCATGTTGCTAGCCTCGAAGGTCGAACAAAGACGTTGCTAGCCTCGAACTTAACCATGTTAATAGAATCCTCAAGTGTCGAACAAAGACGTTGCTAGCCTCGAAGGTGTAGTCAAAAGTGATTCAAGTGTCGAACAAACGGTGTACTTTGTTTGAGTGCTCCAGAGAAAGGAGTCAAGTCTCGATTAAGGGGAGGTTGTTTGAGGGCTCCATAGGCCTCAGGGGAGACTCTGTAGTATACTTTGTTCAAAGAGAGGATTATTGGGATAGAGTCCCACATTGGCTAATTTAGGGAATGATGATGGGTTTATAAGTAAGAAATATATCTCTATTGATATGAGGACTTTTGGGGAAGCCCAAAGCAAAGCCACGAGAGTTTATGCTCAAAGTGATATCATACCATTATGGAGAGTTGTGATTCCTAACAACTACTATATTTATAATAGGTTAGAGTATACTCAATCTTTAATCTTTTATAATTCACAAAGTGTTGTTTAATTATTTCCATGGAAATAGACTCTGCATTTTAGTTACCCATTTGATGAATAAGAAATTAAAGGAAAAGGAAGAATGATAAACCAAGCAATTCATATGCTGCTGCTGGCTAGCTTGGTTCATAATTTGTTCATCACAAGTCTTGTGTCGTAAGGATTGCAGCAATGGCTTTGGTGTGGCAGTATGGAGAGAAATCTGGCAATGAGTCTTGGAAAGGACTTTCTTGGGGAATGGTAAGTTCCTTTTCTGTCTATAATTGCCTTTTCATCTATCTTCTCCCATCCACTTATTTATGTAACTTGAGCAGGTACCCTTGCTAGGTGGAGCATTTTGTGCTTGCACATTGCATTTTTTCTACAATTCTGAGTCTCTTGAGGTATAGTAAGTTTCTGTTTTTGCAAGATCTTGCTGGACGTAATGAAATGACTGATAGTGTTCGTATATTCTAAATAATGCGTACGAATTTTTAATCCAGTTCTTGATCATGATGATTTGTTAAAGTTCTTAGCTGATATAGTTTAGCTTCTTTCAATTATGCTCAGGATGGAATTTAGACCATTTCAGTGTAGTTTGATTAAACTCTTCAATTTAGTCCTAAAAGAAACCATTGATTAGGAAGCTTTGGCTCTCGACGTAATGGTATGAACACTGCCTGTTATTGATATTTTAAGGGTAATTATCAGTACCAAACCTTAACAAAACAGCCAAAAGATGCCCCCCTCGCTTACGCTGCACAAGTACCCTCTCTACCCCTTAGATACCGTCATTGCTTCTTTTCCGGGAAAAAAAGTTCACAACCCGTAGGCCTTCTACCTCCACGCGACATTGCTCTGTCAAGCTTTCGCTTGAGTCCTTGGTACTCATGACAAACTTCTCTTCCTAGCAAACTCTCCCCTGCAGCCACGTATACTCCCCGCCTCTATATCGCTTCGGAAATTCTTAATTGGGGGTCTATGACTATGTCCATCGTTGTTTTGGGTTTTCAATTCTATCCTTGAACTGTGATCATAAGGAGAATCAACTTCTTGCTGCTTGTTTTGTTATCAATCAGGACTCTGAGTTCCTACTCCTATCTTGAAATTTTGTTACCGAGCAACTGTTTCTTCTATTTCGGTTTCATGTTCAGTCAAGTATTTGAACCGGCATGGAAGTCCTCAAATTATGAATTTCTCACGGTGCAGTTTGTTTAAAAAAAAAACTAAACTAAGAACACCTAGAAGAGGAAGTGCTCCCATTTTTATCTTCATTGCTTGAATTGCAGCATCAGATACATGTTTGCAAAGTATCCAAATTTGTTAGTATCTGCTGGATGGCATTAGTTTTGTGCATCAAATTTGACTTGTTCTTCATATTGTGCTCAATGATGGTGGGGAAGAATGCAAAAGAATTAGGGATTGATTTCTATTTGAGATGAATTGAAATTTTCTTGGTTTCGATTGAGTTGTTTTATTTTTTCTTAAATACCAATTATTTAGTATGATTCATGGTTATTGTTTCTGAAAATTAATAGATGTGAAGAAAACTTCCGATCATTTCCCTTCCTCTACTTTGCTTCACTCTGCCATAAGTTTCTTTCAAATTACTTCCAACATAACCATTTGTTGTGTAATCACGCAAGTATTTTCCGGATGTCACATATGATTGTGAACAGCTTGAGGAAGTAAAACTGATCCAAATTGATCTCTCTCTGGGTTTAGGTTGATAGTATTCCAATTATATTGGCTGAAGTTTCAAAAGAACAAGAACAACCTTACTGTGAAAACCAGATCTTTTTCTTACTCTCACTATAAGGATATAGACTACCTCAGTACCTCTTGTTAGGAACCACGAACCTTCACAATGGTATAATATTGTCCACTTTGAGCATAAGCTCTCGTGACTTTACTTTTGGTTTCCCCAAAAGGCCTCATACCAATGGAGATGTATTCCTTACTTATAAACCCATGATCAACCCCTTAATTAGCCGATATGGGACTCCTCTCCCAACAATTCTCAACAATCCTCCTCTCGAATAAAGTACACCATAGAGCCTCCCCTGAGGCCTATGAAGCACTCGAACAAAGTACACCTTTGTTCGACACTTAAGTCATTTTTTACTACATCTTTGAGGCTCACAACTTCTTTGTTCGACATCTGAGGATTCTAATTATATGGCTAAGTTAAGAGAATGACTCTGATACCATATTAGGAACCACAAACCTCCACAATGGTATGATATTGCCCACTTTGAACATAAGCTCTCATGGCTTTGCTTTTGGTTTTCCCAAAAGGCCTCATACCAATGGAGATGTATTCCCTATAAACTCATGATCAACCCCTTAATTAGCCGATATGAGACTCCTCTCCCAACAATTCTCAACACCTCTCTCTCTCTTTAGAAGAAACTGAACCAAGCTTATCTCTGTTCTGGGTTTAGGTTGACTGGATTCAGATTCCATTGCTGTTGTTTCAAAAGAACAAGGCAGACTTACCATGAAAAGAATAAACAACCTCTCTTTCTCTTTCACTCTTCAATTTGATAAGTTCTTGTTTGTCAAGAAATTTTGTTGTGGTAGTGCAGTTCTCACTCTGAAAAGGATATAAAATGACTTGGATTTGGTGTTGAGTGCAGGTATTGGTGGCCCTTCAGGCAATGCTAACGGTTATAGGAAATGCTACAATGTGCATTGCTGCATTTCGCATATACAAATCATCACAAGAGCGTTCAAAGAACTTGTAA

mRNA sequence

ATGATGTCGTTCTCTTCCACCTTCTTACATTCTTTCTCAATCCCCAAATGCCCCATTTCTTCTTCTTCTTCTTCCTCACTGCCCACGTCCAGAGATTCTGCCGCTACTTCTCAACTTCCTACCGGAATTCGACTCCGGAGAGGCGGCGCCGATCGGGTTTTGGACTCGAAATCCATCGTCGTTTTGCTCGGCACTGGTTTCACTCTCTCCCTTCTTGGACCTGCATTGCCTTCTGCTGCGACGGAATTCCAGTCTTCGCTTCTGTTTAACGAGCCCCAAAATGCTCTGTCCTTGCCCACCTGGGCCGTACATGTTTCCATCGTCGTTGAATGGATTGCAGCAATGGCTTTGGTGTGGCAGTATGGAGAGAAATCTGGCAATGAGTCTTGGAAAGGACTTTCTTGGGGAATGGTACCCTTGCTAGGTGGAGCATTTTGTGCTTGCACATTGCATTTTTTCTACAATTCTGAGTCTCTTGAGGTATTGGTGGCCCTTCAGGCAATGCTAACGGTTATAGGAAATGCTACAATGTGCATTGCTGCATTTCGCATATACAAATCATCACAAGAGCGTTCAAAGAACTTGTAA

Coding sequence (CDS)

ATGATGTCGTTCTCTTCCACCTTCTTACATTCTTTCTCAATCCCCAAATGCCCCATTTCTTCTTCTTCTTCTTCCTCACTGCCCACGTCCAGAGATTCTGCCGCTACTTCTCAACTTCCTACCGGAATTCGACTCCGGAGAGGCGGCGCCGATCGGGTTTTGGACTCGAAATCCATCGTCGTTTTGCTCGGCACTGGTTTCACTCTCTCCCTTCTTGGACCTGCATTGCCTTCTGCTGCGACGGAATTCCAGTCTTCGCTTCTGTTTAACGAGCCCCAAAATGCTCTGTCCTTGCCCACCTGGGCCGTACATGTTTCCATCGTCGTTGAATGGATTGCAGCAATGGCTTTGGTGTGGCAGTATGGAGAGAAATCTGGCAATGAGTCTTGGAAAGGACTTTCTTGGGGAATGGTACCCTTGCTAGGTGGAGCATTTTGTGCTTGCACATTGCATTTTTTCTACAATTCTGAGTCTCTTGAGGTATTGGTGGCCCTTCAGGCAATGCTAACGGTTATAGGAAATGCTACAATGTGCATTGCTGCATTTCGCATATACAAATCATCACAAGAGCGTTCAAAGAACTTGTAA

Protein sequence

MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL

Homology

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BLAST of Carg25288 vs. NCBI nr
Match: KAG7015633.1 (hypothetical protein SDJN02_23270, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 375.6 bits (963), Expect = 2.7e-100
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIV 60
           MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIV
Sbjct: 1   MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIV 60

Query: 61  VLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQ 120
           VLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQ
Sbjct: 61  VLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQ 120

Query: 121 YGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIA 180
           YGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIA
Sbjct: 121 YGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIA 180

Query: 181 AFRIYKSSQERSKNL 196
           AFRIYKSSQERSKNL
Sbjct: 181 AFRIYKSSQERSKNL 195

[Close]

BLAST of Carg25288 vs. NCBI nr
Match: KAG6577584.1 (hypothetical protein SDJN03_25158, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 373.6 bits (958), Expect = 1.0e-99
Identity = 194/195 (99.49%), Postives = 194/195 (99.49%), Query Frame = 0


Query: 1   MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIV 60
           MMSFSSTFLHSFSIPKCPISSSS SSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIV
Sbjct: 1   MMSFSSTFLHSFSIPKCPISSSSCSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIV 60

Query: 61  VLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQ 120
           VLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQ
Sbjct: 61  VLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQ 120

Query: 121 YGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIA 180
           YGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIA
Sbjct: 121 YGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIA 180

Query: 181 AFRIYKSSQERSKNL 196
           AFRIYKSSQERSKNL
Sbjct: 181 AFRIYKSSQERSKNL 195

[Close]

BLAST of Carg25288 vs. NCBI nr
Match: XP_022923292.1 (uncharacterized protein LOC111431033 [Cucurbita moschata])

HSP 1 Score: 357.5 bits (916), Expect = 7.6e-95
Identity = 188/195 (96.41%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIV 60
           +MSFSSTFLHSFSIPKCPI SSSSSSLPTSR SAATSQLPTGIRLRRGGA RVLDSKSI+
Sbjct: 35  IMSFSSTFLHSFSIPKCPI-SSSSSSLPTSRASAATSQLPTGIRLRRGGAGRVLDSKSIL 94

Query: 61  VLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQ 120
           VLLGTGFTLS LGPA PSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQ
Sbjct: 95  VLLGTGFTLSFLGPASPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQ 154

Query: 121 YGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIA 180
           YGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIA
Sbjct: 155 YGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIA 214

Query: 181 AFRIYKSSQERSKNL 196
           AFRIYKSSQERSKNL
Sbjct: 215 AFRIYKSSQERSKNL 228

[Close]

BLAST of Carg25288 vs. NCBI nr
Match: XP_023551730.1 (uncharacterized protein LOC111809617 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 354.4 bits (908), Expect = 6.4e-94
Identity = 185/194 (95.36%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 2   MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVV 61
           MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGA RVLDSKSI+V
Sbjct: 1   MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGAGRVLDSKSILV 60

Query: 62  LLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQY 121
           L+GTGFT SLLGP   SAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQY
Sbjct: 61  LVGTGFTFSLLGPESASAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQY 120

Query: 122 GEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAA 181
           GEKSGNESWKGLSWGMVP LGGA CACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAA
Sbjct: 121 GEKSGNESWKGLSWGMVPSLGGACCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAA 180

Query: 182 FRIYKSSQERSKNL 196
           FRIYKSSQERSKNL
Sbjct: 181 FRIYKSSQERSKNL 194

[Close]

BLAST of Carg25288 vs. NCBI nr
Match: XP_022965189.1 (uncharacterized protein LOC111465121 [Cucurbita maxima] >XP_022965190.1 uncharacterized protein LOC111465121 [Cucurbita maxima] >XP_022965191.1 uncharacterized protein LOC111465121 [Cucurbita maxima])

HSP 1 Score: 350.1 bits (897), Expect = 1.2e-92
Identity = 186/201 (92.54%), Postives = 188/201 (93.53%), Query Frame = 0


Query: 2   MSFSSTFLHSFSIPKCPI-------SSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVL 61
           MSFSSTFLHSFSIPKC I       SSSSSSSLPTSRD AATSQLPTGIRLRRG A RVL
Sbjct: 1   MSFSSTFLHSFSIPKCSISSSSSSSSSSSSSSLPTSRDPAATSQLPTGIRLRRGSAGRVL 60

Query: 62  DSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAA 121
           DSKSI+VLLGTGFTLSLL PALPSAATEFQSSLLFNEPQNALSLPTWA+HVSIVVEWIAA
Sbjct: 61  DSKSILVLLGTGFTLSLLEPALPSAATEFQSSLLFNEPQNALSLPTWAIHVSIVVEWIAA 120

Query: 122 MALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGN 181
           MALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLV LQAMLTVIGN
Sbjct: 121 MALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVPLQAMLTVIGN 180

Query: 182 ATMCIAAFRIYKSSQERSKNL 196
           ATMCIAAFRIYKSSQERSKNL
Sbjct: 181 ATMCIAAFRIYKSSQERSKNL 201

[Close]

BLAST of Carg25288 vs. ExPASy Swiss-Prot
Match: Q55720 (Ycf49-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll0608 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.0e-27
Identity = 58/99 (58.59%), Postives = 73/99 (73.74%), Query Frame = 0


Query: 94  NALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFF 153
           NALS+PTW VHVS V+EWI A+ALV +Y  K+G   W+ L+WGMVP L  A CACT HFF
Sbjct: 2   NALSIPTWMVHVSSVIEWIVAIALVSRYATKAGYGHWRALAWGMVPALVSATCACTWHFF 61

Query: 154 YNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERS 193
            N+  L+ LV LQA+ TVIGN T+C+AA+ IY+ S + S
Sbjct: 62  DNASQLDWLVTLQALTTVIGNITLCLAAWWIYRQSAQPS 100

[Close]

BLAST of Carg25288 vs. ExPASy Swiss-Prot
Match: P15811 (Uncharacterized protein ycf49 OS=Cyanophora paradoxa OX=2762 GN=ycf49 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.3e-08
Identity = 36/101 (35.64%), Postives = 50/101 (49.50%), Query Frame = 0


Query: 94  NALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFF 153
           N LS  TW VH+S V+EW+  +     Y +   N S K   +        A CACTLHFF
Sbjct: 2   NVLSYFTWFVHLSSVLEWLNIIYFFLLYTKLKKNLSLKTFIFSFFISFCSALCACTLHFF 61

Query: 154 YNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKN 195
            N      L+ LQ+ LT+  N T+  +   IYK    +++N
Sbjct: 62  NNQSFYYFLINLQSFLTLFANITLYFSIL-IYKQQILKNQN 101

[Close]

BLAST of Carg25288 vs. ExPASy TrEMBL
Match: A0A6J1E5R7 (uncharacterized protein LOC111431033 OS=Cucurbita moschata OX=3662 GN=LOC111431033 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.7e-95
Identity = 188/195 (96.41%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIV 60
           +MSFSSTFLHSFSIPKCPI SSSSSSLPTSR SAATSQLPTGIRLRRGGA RVLDSKSI+
Sbjct: 35  IMSFSSTFLHSFSIPKCPI-SSSSSSLPTSRASAATSQLPTGIRLRRGGAGRVLDSKSIL 94

Query: 61  VLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQ 120
           VLLGTGFTLS LGPA PSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQ
Sbjct: 95  VLLGTGFTLSFLGPASPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQ 154

Query: 121 YGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIA 180
           YGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIA
Sbjct: 155 YGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIA 214

Query: 181 AFRIYKSSQERSKNL 196
           AFRIYKSSQERSKNL
Sbjct: 215 AFRIYKSSQERSKNL 228

[Close]

BLAST of Carg25288 vs. ExPASy TrEMBL
Match: A0A6J1HN17 (uncharacterized protein LOC111465121 OS=Cucurbita maxima OX=3661 GN=LOC111465121 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 5.8e-93
Identity = 186/201 (92.54%), Postives = 188/201 (93.53%), Query Frame = 0


Query: 2   MSFSSTFLHSFSIPKCPI-------SSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVL 61
           MSFSSTFLHSFSIPKC I       SSSSSSSLPTSRD AATSQLPTGIRLRRG A RVL
Sbjct: 1   MSFSSTFLHSFSIPKCSISSSSSSSSSSSSSSLPTSRDPAATSQLPTGIRLRRGSAGRVL 60

Query: 62  DSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAA 121
           DSKSI+VLLGTGFTLSLL PALPSAATEFQSSLLFNEPQNALSLPTWA+HVSIVVEWIAA
Sbjct: 61  DSKSILVLLGTGFTLSLLEPALPSAATEFQSSLLFNEPQNALSLPTWAIHVSIVVEWIAA 120

Query: 122 MALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGN 181
           MALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLV LQAMLTVIGN
Sbjct: 121 MALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVPLQAMLTVIGN 180

Query: 182 ATMCIAAFRIYKSSQERSKNL 196
           ATMCIAAFRIYKSSQERSKNL
Sbjct: 181 ATMCIAAFRIYKSSQERSKNL 201

[Close]

BLAST of Carg25288 vs. ExPASy TrEMBL
Match: A0A6J1DH09 (uncharacterized protein LOC111020415 OS=Momordica charantia OX=3673 GN=LOC111020415 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.9e-75
Identity = 160/199 (80.40%), Postives = 169/199 (84.92%), Query Frame = 0


Query: 2   MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRR-GGADRVLDSKSIV 61
           M  +ST LHSFS PKCPISSSSSSS P SRD AA S+ P GIR RR  GA  VLDSKS+V
Sbjct: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRSRDFAAPSKXPPGIRFRRIIGAGLVLDSKSMV 60

Query: 62  VLLGTGFTLSLLGPALPSAATEFQ----SSLLFNEPQNALSLPTWAVHVSIVVEWIAAMA 121
           VLLGTGFTL+LLGP   SAA E Q    SSL FNEPQNALSLPTWA+HVS VVEWI AMA
Sbjct: 61  VLLGTGFTLALLGPESASAAAELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMA 120

Query: 122 LVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNAT 181
           LVWQYGEKSGNE+WKGLSWGMVPLLGGAFCACT HFFYNSESLEVLVALQA+LT +GNAT
Sbjct: 121 LVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVGNAT 180

Query: 182 MCIAAFRIYKSSQERSKNL 196
           MCIAAFRIYK SQERS+NL
Sbjct: 181 MCIAAFRIYK-SQERSRNL 198

[Close]

BLAST of Carg25288 vs. ExPASy TrEMBL
Match: A0A1S3BLS2 (ycf49-like protein OS=Cucumis melo OX=3656 GN=LOC103490947 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.4e-73
Identity = 151/194 (77.84%), Postives = 161/194 (82.99%), Query Frame = 0


Query: 2   MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVV 61
           MS +S  L+SFSIPK P        LP S D A T+QLPTG+  RR  +     SK++VV
Sbjct: 1   MSLTSPLLYSFSIPKSP--------LPISTDFAPTTQLPTGVSFRRPISRLGFPSKAMVV 60

Query: 62  LLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQY 121
           LLGTGFTL+LLGP   SAATE QSSLLFNEPQNALSLPTWA+HVS VVEWI AMALVWQY
Sbjct: 61  LLGTGFTLALLGPESASAATELQSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQY 120

Query: 122 GEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAA 181
           GEKSGNESWKGLSWGMVPLLGGAFCACT HFFYNSESLEVLVA+QAMLT IGNATMCIAA
Sbjct: 121 GEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAA 180

Query: 182 FRIYKSSQERSKNL 196
           FRIYKSSQERSKNL
Sbjct: 181 FRIYKSSQERSKNL 186

[Close]

BLAST of Carg25288 vs. ExPASy TrEMBL
Match: A0A6J1KVA7 (uncharacterized protein LOC111498507 OS=Cucurbita maxima OX=3661 GN=LOC111498507 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 8.8e-73
Identity = 158/202 (78.22%), Postives = 169/202 (83.66%), Query Frame = 0


Query: 2   MSFSSTFLHSFSIPKCPISSSSSSSLPTS-RDSAATSQLPTGIRLRR-GGADRVLDSKSI 61
           MS +ST LHSFS PKCPISSSSSSSLP S  D AA+SQ  TGIR  R  GA   LDSK++
Sbjct: 1   MSLTSTLLHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRIIGAGLALDSKTM 60

Query: 62  VVLLGTGFTLSLLGP--ALPSAATEFQ----SSLLFNEPQNALSLPTWAVHVSIVVEWIA 121
           VVL+GTG TL+LLGP  A  +AATE Q    SSL FNEPQNALSLPTWA+HVS VVEWI 
Sbjct: 61  VVLIGTGLTLALLGPESAAATAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWIT 120

Query: 122 AMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIG 181
           AMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACT HFFYNSESLEVLVALQA+LT +G
Sbjct: 121 AMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVG 180

Query: 182 NATMCIAAFRIYKSSQERSKNL 196
           NATMCIAAFRIYK+SQERS  L
Sbjct: 181 NATMCIAAFRIYKASQERSSKL 202

[Close]

BLAST of Carg25288 vs. TAIR 10
Match: AT4G22830.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634). )

HSP 1 Score: 175.6 bits (444), Expect = 3.8e-44
Identity = 97/163 (59.51%), Postives = 111/163 (68.10%), Query Frame = 0


Query: 30  SRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALP--SAATEFQSSL 89
           S  S+ T+     IR+R      + D  ++  L+GT    +    A P  +A      SL
Sbjct: 34  SHPSSLTTSNEPVIRIR--SRSLIHDPVALSGLIGTSLVAAAFITAGPDATALAAVVDSL 93

Query: 90  LFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCA 149
             +EP NALSLPTWAVHVS VVEWI AMALVW+YGE+ G ESWKGLSWGMVPLLGGA CA
Sbjct: 94  QLSEPSNALSLPTWAVHVSSVVEWITAMALVWKYGERKGYESWKGLSWGMVPLLGGALCA 153

Query: 150 CTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQE 191
           CT HFFYN ESLEVLVALQA LTV GN T+CIAAFRI K S +
Sbjct: 154 CTWHFFYNDESLEVLVALQAALTVFGNITLCIAAFRINKLSSK 194

[Close]

BLAST of Carg25288 vs. TAIR 10
Match: AT4G22830.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). )

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-43
Identity = 107/191 (56.02%), Postives = 121/191 (63.35%), Query Frame = 0


Query: 2   MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVV 61
           M+ +ST    F   K       S S P S  S  TS  P  IR+R      + D  ++  
Sbjct: 1   MAIASTATVLFCCAKPNFRRIHSESRPAS--SLTTSNEPV-IRIR--SRSLIHDPVALSG 60

Query: 62  LLGTGFTLSLLGPALP--SAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVW 121
           L+GT    +    A P  +A      SL  +EP NALSLPTWAVHVS VVEWI AMALVW
Sbjct: 61  LIGTSLVAAAFITAGPDATALAAVVDSLQLSEPSNALSLPTWAVHVSSVVEWITAMALVW 120

Query: 122 QYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCI 181
           +YGE+ G ESWKGLSWGMVPLLGGA CACT HFFYN ESLEVLVALQA LTV GN T+CI
Sbjct: 121 KYGERKGYESWKGLSWGMVPLLGGALCACTWHFFYNDESLEVLVALQAALTVFGNITLCI 180

Query: 182 AAFRIYKSSQE 191
           AAFRI K S +
Sbjct: 181 AAFRINKLSSK 186

The following BLAST results are available for this feature:

BLAST of Carg25288 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015633.1	2.7e-100	100.00	hypothetical protein SDJN02_23270, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577584.1	1.0e-99	99.49	hypothetical protein SDJN03_25158, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923292.1	7.6e-95	96.41	uncharacterized protein LOC111431033 [Cucurbita moschata]	[more]
XP_023551730.1	6.4e-94	95.36	uncharacterized protein LOC111809617 [Cucurbita pepo subsp. pepo]	[more]
XP_022965189.1	1.2e-92	92.54	uncharacterized protein LOC111465121 [Cucurbita maxima] >XP_022965190.1 uncharac...	[more]

BLAST of Carg25288 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55720	7.0e-27	58.59	Ycf49-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
P15811	4.3e-08	35.64	Uncharacterized protein ycf49 OS=Cyanophora paradoxa OX=2762 GN=ycf49 PE=3 SV=1	[more]

BLAST of Carg25288 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5R7	3.7e-95	96.41	uncharacterized protein LOC111431033 OS=Cucurbita moschata OX=3662 GN=LOC1114310...	[more]
A0A6J1HN17	5.8e-93	92.54	uncharacterized protein LOC111465121 OS=Cucurbita maxima OX=3661 GN=LOC111465121...	[more]
A0A6J1DH09	1.9e-75	80.40	uncharacterized protein LOC111020415 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A1S3BLS2	1.4e-73	77.84	ycf49-like protein OS=Cucumis melo OX=3656 GN=LOC103490947 PE=4 SV=1	[more]
A0A6J1KVA7	8.8e-73	78.22	uncharacterized protein LOC111498507 OS=Cucurbita maxima OX=3661 GN=LOC111498507...	[more]

BLAST of Carg25288 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22830.2	3.8e-44	59.51	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G22830.1	2.5e-43	56.02	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019634	Uncharacterised protein family Ycf49	PFAM	PF10693	DUF2499	coord: 95..182 e-value: 7.5E-37 score: 125.5
None	No IPR available	PANTHER	PTHR33833	NUCLEOLAR-LIKE PROTEIN-RELATED	coord: 36..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25288-RA	Carg25288-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane