Carg24989 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24989
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transcription initiation factor IIB
Location	Carg_Chr03: 501122 .. 506008 (-)
RNA-Seq Expression	Carg24989
Synteny	Carg24989

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGATGCGTTCTGCTCTGACTGTAAGCGTCAGACGGAGGTTGTTTTCGACCATTCCGCCGGAGATACTGTGTGTTCCGAGTGCGGCCTTGTGCTTGAGTCGCACTCCATTGATGAGACCTCCGAGTGGAGGACTTTTGCCAACGAGTCTGGGGATAACGACCCGGTTCGTGTTGGTGGACCGACGAATCCGCTTTTGGCTGATGGTGGCCTCTCGACCGTGATTGCCAAGCCTAATGGTACGTCTGGGGAGTTCTTGTCCTCGTCTTTGGGTCGGTGGCAGAATCGTGGGTCTAATCCAGATCGAGGGCTGATTCTTGCTTTCAAGACCATTGCTACTATGTCTGATAGGTAAGGGGGTTGGATGTTTTAGTGGTGGTTTGGATGCTGAGGAAGAGTGGAATTTGTTGGATTTCTCTGGATCTTGATTTCGTTTCCTTAGCCTTGTGCCGTTAAACAGATCGAATTGGGATTATGGCGGGGTCGGAATTGGGAAATCTGACTAGTTTGAGGATTTTTATGTTCGTGGGAGAAATTTTAACGATGGATACAAATTTTGGGAACAGATTGTTTAGGATTCGGGTTATGCAGCAGGAACTAGTTGGCGAACTTTCTGTAATTTAGGGAAGCGTTTCTTTCTTTCTTGGAAAAATAAGTCGAGGACAAGTGATCTTACCTTGTTTACGGATTCACTTATCAGAAGTTAGGAACTTATATGTTGAGCTAAGAAGTCCTATAAATGAAAACTCGATCTGGGTATTTCTTTTGGGGGGGAGAATATTGAATTAAAACCTATCCCTTTACTGCATAGATGCGCCGCTATGTGATCGAGCTGAATTTTGTAAAATGGTTCTTCACATCTGGAAAACTTGCTTGTGAGACAAAGCTTTGGAGTTGAACTTTCTTTTGTAGCTTTTGCTTTCTTTCTTCAATTTCCTGGCAAGCAACTTTGTAGATGGAGTGGAATATCTTAATTCAGAGCTCAATTAGGTCGATATAGCTTGTTGCTTTGGAGTTTCAAGGTCTTTTTTGTATTCATTTTGGGTGGAGCCACTTCTCTAATTGGGTTTTAAACAGTGAATAAACTTAAATGTTTACTCCTTCCATCCAGTGTTTGATGTATTTTTTAAATTATTGCTCTTGACACAAGATGATTATGGATCTGGGTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCCGTATTTTCGTTCAGTTTATGGTGTTTTTGTACTGATTAGAATTTTTATTCGGCTGCTTGTTCTAAGCGTCCCAACTTTGAGTTATGTAATTTGAGATTGATTTATAATGTTCAATGAAGTTATGAGTTTGCATATCTTTGGAAGATTATTGAGTCCCATGGCTACTATGATTTTGGTGCGATTACTTTTGAGACTATTTTTAAGAAGTGCCACATTTAGAAAGACCATAGATAACTAATGCAGCTTTATTGTGTTTCAGGTTGGGCCTTGTTGCAACCATAAAGGTATGCAGTTTTCCATCCATTATGACATAATACCACAAGTTTCTATTTCTTGTATTTTCTCAAAGCATTCAGGTTACTTGTCAATATAGAATGATCATGCAGTATTCTGAAGGTTGGAATAATGTATGTTTCATAGTTCTTGTTAAACGTTTATTCGGGAAGTGATGCACAATGCATGGGTCAATTTGGAATTGTTGGATACGTACGGTGCACATATATAGATAAGAAACAAGACTTTCCTTATAAAAAAGGAGGTTACAAAGGGTGGGAGATGAGGTTTCCCCACTTAGCTAAGGGGCTACAAAAACGCTTTCCTATTGGCATAAATTTGAAGAAAAGAGTAATTACACATATTATCAAAGAAAGAAGTGCAAGCCCTGAAAATAAGATTCAAGTCCTTATGAATTGTGAGATAGAAGCATAGAATAGAAAGTAACCAGAAAATTGTATAATTTCTAAAGCCCTTCCCTATTTCTAACCAAGAACATGCTTGCCTAGACTCAGTGGTTGAATCACTTAGGACAGTGGTTTATTCGTGTAGCGTCATGACTAAAATTTTGTTTTGAGCTTCATTTCTGTAGTAACAAAATGCATATTAAAGGGTCTAAAATGCTGTTGAGGGGGTTGAAAACAGCAAATGGGAGAGGAATTTGTGGAGCATTAACAAGAGAATAATGAGGAAACAGAATAAGGAAGTTGGATAGTGGGTGAGAGTGAATTCATTTATAACTTTGAAGAATTCTTTAAGAACACACTATTGCTGTGATAAAGAATCGTCTGTTGTAGATTTTGTGCAAACATTATATCTTCTTGGGTGTCTATGACAAAGATATTTTGTAATTGTTATATGTTGCGATTGTACTTGGTATCGTTGCTAAAGACGTATTTGTAGAGGCTTTTGCCGCTTTTTCTTGGCTCTTTATTGTTTCAAACATTTTTTTTGTGGGTATTGCCCAGCTGTATATACTTGTGTTCTGTCCGTGAATGAATAGTTTTTCATTAAAAAATTTTGTTTCCTATTAAAAGAGGTTATTCAATATATACCTGTAGTATATGATTTGAAGATCGGCTTGGTTTTAGATTTTGCTTTCGAGTGTCGTTCATCATTTCTCTAGAAAGTGACCTTTGATATTTTGTAAATGTTTATCTTCAATGAGTTTCAAATTTATTAATTATATATAGGATCGAGCCAATGAAATATATAAAAGAGTAGAAGATCAAAAATCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGCTTATACATTGCTTGTCGACAAGAAGATAAGCCCCGCACGGTCAAGGGTATTTTCTTATATATCATTGATATCTGGAACATTTGTAGTTATTCTATTCTTACCTAATCATGCTGATTTCGAGTAGAAATTTGCTCCGTTGCCAATGGGGCAACAAAGAAGGAGATTGGCCGAGCAAAGGAATACATTGTGAAACAGTTGGGGTTGGAGACAGGTCAGTCTGTGGAGATGGGAACGATACACGCCGGAGACTTCATGGTGAGTTTTTGGGTGAAAGAACTCATGTTGATTTTTTGAACTTTGATCATGGACAATATGTCGTTTTTTTCTGACGTCAATTTTTTTTTCCGAATGAATATAGAGGCGTTTTTGTTCTAATCTTGGGATGAATAATCAAGCTGTTAAAGCTGCCCAAGAAGCTGTACAGAAATCTGAAGAGTTCGATATTAGGTAAAATTCGTTTCCTCTGGTTGTTGTGACGTAATCTGTAAGCGTTTATGTTCGACAAAATCCATCCTGAAAGCATCCTCTTCTGGTCTGTCAGTAGTAGCTGACCATATCCTCGACTACGAGCATATGGTTGAATGTTACAGTTTAATATGTCCTTGCTTTCCATGCTGCCGCACCGCAGTATTGGTATCCACTGGTTGATTTCTTTGTCCTTGCTTTCCTTGCTTTCCTTGCTTTCCTCTCTCCCACATGGGTTGGAGAGAGGAACGAAACATTTCTTATAAGGACGTGGAAACCACCTCTCCCTAATAGACACGTGAATAGGCCAAAACGGACAGTATCGGCTAATGATGGGTTTGGGCTGTTACATATGGCTTTTTTGCCTATGCTCGTAACCACTTCATTCTGAGGTTGAGGTCAACGCCCACTTTTGTCAAATTAAAAGAATAGGATGTTTTTTTAAGATAGAAAACAAAAAAGCTACCATTAAGTCAACTGTATTTTTCTTCATCTTATACTGTAATTCATTCTTCCCAGACACTTTTGAGGAGGAACCCTATTTTTTCGTAGGACTGGAATTTATTCTGGTTGACTTTTTGCTTGAGAGTATTTTCTTCCCTGTTTTCAGGAGGAGCCCTATTTCCATTGCAGCAGCAGTTATTTACATTATCACTCAGCTTTCAGATGATAAGAAGCCTCTGAAAGGTAATGTTAGCTGCCATTAAAGCTTCACTTCATCATTTAAGTTTACAACTATGAATCATAATCTGAGATGATTCACGTTATTCTTATCTGCAAAATCATGTTTGTTAGCGATTCCGTTAACTGTTTCTGGAATTTTTGGTTTTCCAACTAGAGATGTCCATTTTACCCGTGGGGACTTGCTGGGGAGTGGGGAGGGAATTGGGAGCTTTTTTTTCGGTTAGATAAATGGGGCTATGGGATTATACTCCCCGCTTCTGCCTTGTTTAATATAAATATATTTTCAATATATATATACCACTTTTTTGGCTAATTAGAAAAATAAATTAGATAGTTTTGAGACTCTAATGTTAGTAGTTATGAGAAGGTTGTCCCGTTTTCGCCTTGTGCCATGGACATCTTTAAAGTAGACCTCGAGAGTATTATTTTTGTTAGTCTTGATCGAGTGTATTATGTATTAAATATGTGGATGTGATTTAAGCGCAGATATATCAGTAGCTACGGGTGTTGCAGAAGGGACGATCAGAAATTCATATAAAGATCTGTATCCGCACGTGTCGAAGATAATACCGGGTTGGTATGCGAAAGAGGAGGATCTTAAGAACCTGTGCAGTCCCTAAAATGTCGAGCGAAAGTGATGAGAAATGATGACAGGAATCGAGTCGAAATTGGGAATGATTACTTTTTGTTAGCCTTGTATTTAAACCCTCAGAGATTGCAAGACAAGGAGTGGTAGCCAGAAAATCTCTCCCCCCCCCCTCCTCCTCCTCCTCCTCCTCCTGCTCTGCTTCTCTCTCTTTTTTCTAAATAGATTCATTGCCATTATCAAAATTCCAAATGAACCTCCATAATTTTCACCTCAATTCACAATCAAAGTTCTCCCAAATTTTGTGATGCTCTCCTCAAATATCATTGCCATTCATTTAGCATTTGCTTCAAGTTCATACTCTGATTTTTAGGACTGCTTTTCAGTATTCGGTTTTCCCTC

mRNA sequence

ATGTCCGATGCGTTCTGCTCTGACTGTAAGCGTCAGACGGAGGTTGTTTTCGACCATTCCGCCGGAGATACTGTGTGTTCCGAGTGCGGCCTTGTGCTTGAGTCGCACTCCATTGATGAGACCTCCGAGTGGAGGACTTTTGCCAACGAGTCTGGGGATAACGACCCGGTTCGTGTTGGTGGACCGACGAATCCGCTTTTGGCTGATGGTGGCCTCTCGACCGTGATTGCCAAGCCTAATGGTACGTCTGGGGAGTTCTTGTCCTCGTCTTTGGGTCGGTGGCAGAATCGTGGGTCTAATCCAGATCGAGGGCTGATTCTTGCTTTCAAGACCATTGCTACTATGTCTGATAGGTTGGGCCTTGTTGCAACCATAAAGGTTACTTGTCAATATAGAATGATCATGCAGTATTCTGAAGGTTGGAATAATGATCGAGCCAATGAAATATATAAAAGAGTAGAAGATCAAAAATCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGCTTATACATTGCTTGTCGACAAGAAGATAAGCCCCGCACGGTCAAGGAAATTTGCTCCGTTGCCAATGGGGCAACAAAGAAGGAGATTGGCCGAGCAAAGGAATACATTGTGAAACAGTTGGGGTTGGAGACAGGTCAGTCTGTGGAGATGGGAACGATACACGCCGGAGACTTCATGAGGCGTTTTTGTTCTAATCTTGGGATGAATAATCAAGCTGTTAAAGCTGCCCAAGAAGCTGTACAGAAATCTGAAGAGTTCGATATTAGGAGGAGCCCTATTTCCATTGCAGCAGCAGTTATTTACATTATCACTCAGCTTTCAGATGATAAGAAGCCTCTGAAAGATATATCAGTAGCTACGGGTGTTGCAGAAGGGACGATCAGAAATTCATATAAAGATCTGTATCCGCACGTGTCGAAGATAATACCGGGTTGGTATGCGAAAGAGGAGGATCTTAAGAACCTGTGCAGTCCCTAAAATGTCGAGCGAAAGTGGGAATGATTACTTTTTGTTAGCCTTGTATTTAAACCCTCAGAGATTGCAAGACAAGGAGTGGTAGCCAGAAAATCTCTCCCCCCCCCCTCCTCCTCCTCCTCCTCCTCCTGCTCTGCTTCTCTCTCTTTTTTCTAAATAGATTCATTGCCATTATCAAAATTCCAAATGAACCTCCATAATTTTCACCTCAATTCACAATCAAAGTTCTCCCAAATTTTGTGATGCTCTCCTCAAATATCATTGCCATTCATTTAGCATTTGCTTCAAGTTCATACTCTGATTTTTAGGACTGCTTTTCAGTATTCGGTTTTCCCTC

Coding sequence (CDS)

ATGTCCGATGCGTTCTGCTCTGACTGTAAGCGTCAGACGGAGGTTGTTTTCGACCATTCCGCCGGAGATACTGTGTGTTCCGAGTGCGGCCTTGTGCTTGAGTCGCACTCCATTGATGAGACCTCCGAGTGGAGGACTTTTGCCAACGAGTCTGGGGATAACGACCCGGTTCGTGTTGGTGGACCGACGAATCCGCTTTTGGCTGATGGTGGCCTCTCGACCGTGATTGCCAAGCCTAATGGTACGTCTGGGGAGTTCTTGTCCTCGTCTTTGGGTCGGTGGCAGAATCGTGGGTCTAATCCAGATCGAGGGCTGATTCTTGCTTTCAAGACCATTGCTACTATGTCTGATAGGTTGGGCCTTGTTGCAACCATAAAGGTTACTTGTCAATATAGAATGATCATGCAGTATTCTGAAGGTTGGAATAATGATCGAGCCAATGAAATATATAAAAGAGTAGAAGATCAAAAATCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGCTTATACATTGCTTGTCGACAAGAAGATAAGCCCCGCACGGTCAAGGAAATTTGCTCCGTTGCCAATGGGGCAACAAAGAAGGAGATTGGCCGAGCAAAGGAATACATTGTGAAACAGTTGGGGTTGGAGACAGGTCAGTCTGTGGAGATGGGAACGATACACGCCGGAGACTTCATGAGGCGTTTTTGTTCTAATCTTGGGATGAATAATCAAGCTGTTAAAGCTGCCCAAGAAGCTGTACAGAAATCTGAAGAGTTCGATATTAGGAGGAGCCCTATTTCCATTGCAGCAGCAGTTATTTACATTATCACTCAGCTTTCAGATGATAAGAAGCCTCTGAAAGATATATCAGTAGCTACGGGTGTTGCAGAAGGGACGATCAGAAATTCATATAAAGATCTGTATCCGCACGTGTCGAAGATAATACCGGGTTGGTATGCGAAAGAGGAGGATCTTAAGAACCTGTGCAGTCCCTAA

Protein sequence

MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWYAKEEDLKNLCSP

Homology

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BLAST of Carg24989 vs. NCBI nr
Match: KAG7033507.1 (Transcription initiation factor IIB-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 662.9 bits (1709), Expect = 1.4e-186
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180
           LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED
Sbjct: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180

Query: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240
           KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN
Sbjct: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240

Query: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300
           NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN
Sbjct: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300

Query: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           SYKDLYPHVSKIIPGWYAKEEDLKNLCSP
Sbjct: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 329

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BLAST of Carg24989 vs. NCBI nr
Match: XP_022152227.1 (transcription initiation factor IIB-2 [Momordica charantia] >XP_022928717.1 transcription initiation factor IIB-2 [Cucurbita moschata] >XP_022967855.1 transcription initiation factor IIB-2 [Cucurbita maxima] >XP_023544538.1 transcription initiation factor IIB-2 [Cucurbita pepo subsp. pepo] >KAG6603201.1 Transcription initiation factor IIB-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 614.4 bits (1583), Expect = 5.8e-172
Identity = 312/329 (94.83%), Postives = 312/329 (94.83%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180
           LVATIK                 DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED
Sbjct: 121 LVATIK-----------------DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180

Query: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240
           KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN
Sbjct: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240

Query: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300
           NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN
Sbjct: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300

Query: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           SYKDLYPHVSKIIPGWYAKEEDLKNLCSP
Sbjct: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 312

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BLAST of Carg24989 vs. NCBI nr
Match: XP_004150610.1 (transcription initiation factor IIB-2 [Cucumis sativus] >XP_008455781.1 PREDICTED: transcription initiation factor IIB-2 [Cucumis melo] >KAA0043603.1 transcription initiation factor IIB-2-like [Cucumis melo var. makuwa] >KGN54643.1 hypothetical protein Csa_012330 [Cucumis sativus] >TYK29758.1 transcription initiation factor IIB-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 612.5 bits (1578), Expect = 2.2e-171
Identity = 310/329 (94.22%), Postives = 312/329 (94.83%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGT+GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180
           LVATIK                 DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED
Sbjct: 121 LVATIK-----------------DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180

Query: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240
           KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN
Sbjct: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240

Query: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300
           NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN
Sbjct: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300

Query: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           SYKDLYPHVSKI+PGWYAKEEDLKNLCSP
Sbjct: 301 SYKDLYPHVSKILPGWYAKEEDLKNLCSP 312

[Close]

BLAST of Carg24989 vs. NCBI nr
Match: XP_022924909.1 (transcription initiation factor IIB-2-like [Cucurbita moschata] >XP_023518635.1 transcription initiation factor IIB-2-like [Cucurbita pepo subsp. pepo] >KAG6595678.1 Transcription initiation factor IIB-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 611.7 bits (1576), Expect = 3.7e-171
Identity = 310/329 (94.22%), Postives = 312/329 (94.83%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GP+NPLLADGGLSTVIAKPNGT+GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPSNPLLADGGLSTVIAKPNGTAGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180
           LVATIK                 DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED
Sbjct: 121 LVATIK-----------------DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180

Query: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240
           KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN
Sbjct: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240

Query: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300
           NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN
Sbjct: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300

Query: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           SYKDLYPHVSKIIPGWYAKEEDLKNLCSP
Sbjct: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 312

[Close]

BLAST of Carg24989 vs. NCBI nr
Match: XP_028766652.1 (transcription initiation factor IIB-2 [Prosopis alba])

HSP 1 Score: 607.1 bits (1564), Expect = 9.2e-170
Identity = 308/329 (93.62%), Postives = 309/329 (93.92%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGATGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180
           LVATIK                 DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED
Sbjct: 121 LVATIK-----------------DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180

Query: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240
           KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE GQSVEMGTIHAGDFMRRFCSNLGMN
Sbjct: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMN 240

Query: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300
           NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN
Sbjct: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300

Query: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           SYKDLYPHVSKIIP WYAKEEDLKNLCSP
Sbjct: 301 SYKDLYPHVSKIIPAWYAKEEDLKNLCSP 312

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BLAST of Carg24989 vs. ExPASy Swiss-Prot
Match: Q9SS44 (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana OX=3702 GN=TFIIB2 PE=2 SV=1)

HSP 1 Score: 587.0 bits (1512), Expect = 1.3e-166
Identity = 296/329 (89.97%), Postives = 306/329 (93.01%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKR TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61  GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120

Query: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180
           LVATIK                 DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED
Sbjct: 121 LVATIK-----------------DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180

Query: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240
           KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQ VEMGTIHAGDFMRRFCSNLGM 
Sbjct: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMT 240

Query: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300
           NQ VKAAQE+VQKSEEFDIRRSPISIAAAVIYIITQLSD+KKPL+DISVATGVAEGTIRN
Sbjct: 241 NQTVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRN 300

Query: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           SYKDLYPH+SKIIP WYAKEEDLKNL SP
Sbjct: 301 SYKDLYPHLSKIIPAWYAKEEDLKNLQSP 312

[Close]

BLAST of Carg24989 vs. ExPASy Swiss-Prot
Match: P48513 (Transcription initiation factor IIB OS=Glycine max OX=3847 GN=TFIIB1 PE=2 SV=1)

HSP 1 Score: 583.2 bits (1502), Expect = 1.9e-165
Identity = 299/330 (90.61%), Postives = 302/330 (91.52%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPN-GTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 120
           GP+NPLL DGGLSTVIAKPN G  GEFLSSSLGRWQNRGSNPDR LI AFKTIATMSDRL
Sbjct: 61  GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120

Query: 121 GLVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQE 180
           GLVATIK                 DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQE
Sbjct: 121 GLVATIK-----------------DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQE 180

Query: 181 DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGM 240
           DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE G +VEMGTIHAGDFMRRFCSNL M
Sbjct: 181 DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCM 240

Query: 241 NNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIR 300
           NNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDIS+ATGVAEGTIR
Sbjct: 241 NNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIR 300

Query: 301 NSYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           NSYKDLYPHVSKIIP WYAKEEDLKNLCSP
Sbjct: 301 NSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313

[Close]

BLAST of Carg24989 vs. ExPASy Swiss-Prot
Match: Q8W0W3 (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIB PE=1 SV=1)

HSP 1 Score: 549.3 bits (1414), Expect = 3.0e-155
Identity = 273/329 (82.98%), Postives = 294/329 (89.36%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSD+FC DCK+ TEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1   MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLL DGGLSTVIAKPNG  GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61  GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120

Query: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180
           LVATIK                 DRANEIYK+VED KS RGRNQDA+LAACLYIACRQED
Sbjct: 121 LVATIK-----------------DRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQED 180

Query: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240
           +PRTVKEICSVANGATKKEIGRAKE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGMN
Sbjct: 181 RPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMN 240

Query: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300
           NQAVKAAQEAVQ+SEE DIRRSPISIAAAVIY+ITQLSDDKKPLKDIS+ATGVAEGTIRN
Sbjct: 241 NQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRN 300

Query: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           SYKDLYP+ S++IP  YAKEEDLKNLC+P
Sbjct: 301 SYKDLYPYASRLIPNTYAKEEDLKNLCTP 312

[Close]

BLAST of Carg24989 vs. ExPASy Swiss-Prot
Match: P48512 (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana OX=3702 GN=TFIIB1 PE=1 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 1.4e-152
Identity = 271/329 (82.37%), Postives = 292/329 (88.75%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDA+C+DCK++TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1   MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLAD  L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61  GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120

Query: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180
           LVATIK                 DRANE+YKR+EDQKSSRGRNQDAL AACLYIACRQED
Sbjct: 121 LVATIK-----------------DRANELYKRLEDQKSSRGRNQDALYAACLYIACRQED 180

Query: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240
           KPRT+KEIC +ANGATKKEIGRAK+YIVK LGLE GQSV++GTIHAGDFMRRFCSNL M+
Sbjct: 181 KPRTIKEICVIANGATKKEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMS 240

Query: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300
           N AVKAAQEAVQKSEEFDIRRSPISIAA VIYIITQLSDDKK LKDIS ATGVAEGTIRN
Sbjct: 241 NHAVKAAQEAVQKSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRN 300

Query: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           SYKDLYPH+SKI P WYAKEEDLKNL SP
Sbjct: 301 SYKDLYPHLSKIAPSWYAKEEDLKNLSSP 312

[Close]

BLAST of Carg24989 vs. ExPASy Swiss-Prot
Match: Q9LIA6 (Plant-specific TFIIB-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=PBRP2 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 9.3e-64
Identity = 143/336 (42.56%), Postives = 201/336 (59.82%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVR 60
           M +  C DCKR T +V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++    D DP R
Sbjct: 1   MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60

Query: 61  VGGPTNPLLADGGLSTVIAKPNGTSGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 120
           VG  TNP L  G L T+I KP  T+   LS    S+L R  N+  N +  LI  AF+ I 
Sbjct: 61  VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120

Query: 121 TMSDRLGLVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVE---DQKSSRGRNQDALLAA 180
            M+D L L   I                 N RA EI  + +   + K  RG+  +A+ AA
Sbjct: 121 RMTDALDLDIVI-----------------NSRACEIVSKYDGHANTKLRRGKKLNAICAA 180

Query: 181 CLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL--GLETGQSVEMGTIHAGD 240
            +  ACR+    RT+KEI  VANG  KK+I R +  ++K++    +T  S     I+ G+
Sbjct: 181 SVSTACRELQLSRTLKEIAEVANGVDKKDI-RKESLVIKRVLESHQTSVSASQAIINTGE 240

Query: 241 FMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSD-DKKPLKDI 300
            +RRFCS L ++ + + A  EAV+K+E FDIRR+P S+ AA+I++I+ +S  ++KP+++I
Sbjct: 241 LVRRFCSKLDISQREIMAIPEAVEKAENFDIRRNPKSVLAAIIFMISHISQTNRKPIREI 300

Query: 301 SVATGVAEGTIRNSYKDLYPHVSKIIPGWYAKEEDL 324
            +   V E TI+NS KD+YP+  KIIP WYA E D+
Sbjct: 301 GIVAEVVENTIKNSVKDMYPYALKIIPNWYACESDI 318

[Close]

BLAST of Carg24989 vs. ExPASy TrEMBL
Match: A0A6J1HVL0 (transcription initiation factor IIB-2 OS=Cucurbita maxima OX=3661 GN=LOC111467238 PE=3 SV=1)

HSP 1 Score: 614.4 bits (1583), Expect = 2.8e-172
Identity = 312/329 (94.83%), Postives = 312/329 (94.83%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180
           LVATIK                 DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED
Sbjct: 121 LVATIK-----------------DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180

Query: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240
           KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN
Sbjct: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240

Query: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300
           NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN
Sbjct: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300

Query: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           SYKDLYPHVSKIIPGWYAKEEDLKNLCSP
Sbjct: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 312

[Close]

BLAST of Carg24989 vs. ExPASy TrEMBL
Match: A0A6J1DFL4 (transcription initiation factor IIB-2 OS=Momordica charantia OX=3673 GN=LOC111019998 PE=3 SV=1)

HSP 1 Score: 614.4 bits (1583), Expect = 2.8e-172
Identity = 312/329 (94.83%), Postives = 312/329 (94.83%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180
           LVATIK                 DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED
Sbjct: 121 LVATIK-----------------DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180

Query: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240
           KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN
Sbjct: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240

Query: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300
           NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN
Sbjct: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300

Query: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           SYKDLYPHVSKIIPGWYAKEEDLKNLCSP
Sbjct: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 312

[Close]

BLAST of Carg24989 vs. ExPASy TrEMBL
Match: A0A6J1EKQ3 (transcription initiation factor IIB-2 OS=Cucurbita moschata OX=3662 GN=LOC111435544 PE=3 SV=1)

HSP 1 Score: 614.4 bits (1583), Expect = 2.8e-172
Identity = 312/329 (94.83%), Postives = 312/329 (94.83%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180
           LVATIK                 DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED
Sbjct: 121 LVATIK-----------------DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180

Query: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240
           KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN
Sbjct: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240

Query: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300
           NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN
Sbjct: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300

Query: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           SYKDLYPHVSKIIPGWYAKEEDLKNLCSP
Sbjct: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 312

[Close]

BLAST of Carg24989 vs. ExPASy TrEMBL
Match: A0A5D3E1U7 (Transcription initiation factor IIB-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00120 PE=3 SV=1)

HSP 1 Score: 612.5 bits (1578), Expect = 1.1e-171
Identity = 310/329 (94.22%), Postives = 312/329 (94.83%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGT+GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180
           LVATIK                 DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED
Sbjct: 121 LVATIK-----------------DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180

Query: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240
           KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN
Sbjct: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240

Query: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300
           NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN
Sbjct: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300

Query: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           SYKDLYPHVSKI+PGWYAKEEDLKNLCSP
Sbjct: 301 SYKDLYPHVSKILPGWYAKEEDLKNLCSP 312

[Close]

BLAST of Carg24989 vs. ExPASy TrEMBL
Match: A0A0A0KYQ5 (TFIIB-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G415910 PE=3 SV=1)

HSP 1 Score: 612.5 bits (1578), Expect = 1.1e-171
Identity = 310/329 (94.22%), Postives = 312/329 (94.83%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGT+GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180
           LVATIK                 DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED
Sbjct: 121 LVATIK-----------------DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180

Query: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240
           KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN
Sbjct: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240

Query: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300
           NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN
Sbjct: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300

Query: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           SYKDLYPHVSKI+PGWYAKEEDLKNLCSP
Sbjct: 301 SYKDLYPHVSKILPGWYAKEEDLKNLCSP 312

[Close]

BLAST of Carg24989 vs. TAIR 10
Match: AT3G10330.1 (Cyclin-like family protein )

HSP 1 Score: 587.0 bits (1512), Expect = 9.2e-168
Identity = 296/329 (89.97%), Postives = 306/329 (93.01%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKR TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61  GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120

Query: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180
           LVATIK                 DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED
Sbjct: 121 LVATIK-----------------DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180

Query: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240
           KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQ VEMGTIHAGDFMRRFCSNLGM 
Sbjct: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMT 240

Query: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300
           NQ VKAAQE+VQKSEEFDIRRSPISIAAAVIYIITQLSD+KKPL+DISVATGVAEGTIRN
Sbjct: 241 NQTVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRN 300

Query: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           SYKDLYPH+SKIIP WYAKEEDLKNL SP
Sbjct: 301 SYKDLYPHLSKIIPAWYAKEEDLKNLQSP 312

[Close]

BLAST of Carg24989 vs. TAIR 10
Match: AT2G41630.1 (transcription factor IIB )

HSP 1 Score: 540.4 bits (1391), Expect = 9.9e-154
Identity = 271/329 (82.37%), Postives = 292/329 (88.75%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDA+C+DCK++TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1   MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLAD  L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61  GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120

Query: 121 LVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQED 180
           LVATIK                 DRANE+YKR+EDQKSSRGRNQDAL AACLYIACRQED
Sbjct: 121 LVATIK-----------------DRANELYKRLEDQKSSRGRNQDALYAACLYIACRQED 180

Query: 181 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 240
           KPRT+KEIC +ANGATKKEIGRAK+YIVK LGLE GQSV++GTIHAGDFMRRFCSNL M+
Sbjct: 181 KPRTIKEICVIANGATKKEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMS 240

Query: 241 NQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 300
           N AVKAAQEAVQKSEEFDIRRSPISIAA VIYIITQLSDDKK LKDIS ATGVAEGTIRN
Sbjct: 241 NHAVKAAQEAVQKSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRN 300

Query: 301 SYKDLYPHVSKIIPGWYAKEEDLKNLCSP 330
           SYKDLYPH+SKI P WYAKEEDLKNL SP
Sbjct: 301 SYKDLYPHLSKIAPSWYAKEEDLKNLSSP 312

[Close]

BLAST of Carg24989 vs. TAIR 10
Match: AT3G29380.1 (Cyclin-like family protein )

HSP 1 Score: 245.4 bits (625), Expect = 6.6e-65
Identity = 143/336 (42.56%), Postives = 201/336 (59.82%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVR 60
           M +  C DCKR T +V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++    D DP R
Sbjct: 1   MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60

Query: 61  VGGPTNPLLADGGLSTVIAKPNGTSGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 120
           VG  TNP L  G L T+I KP  T+   LS    S+L R  N+  N +  LI  AF+ I 
Sbjct: 61  VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120

Query: 121 TMSDRLGLVATIKVTCQYRMIMQYSEGWNNDRANEIYKRVE---DQKSSRGRNQDALLAA 180
            M+D L L   I                 N RA EI  + +   + K  RG+  +A+ AA
Sbjct: 121 RMTDALDLDIVI-----------------NSRACEIVSKYDGHANTKLRRGKKLNAICAA 180

Query: 181 CLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL--GLETGQSVEMGTIHAGD 240
            +  ACR+    RT+KEI  VANG  KK+I R +  ++K++    +T  S     I+ G+
Sbjct: 181 SVSTACRELQLSRTLKEIAEVANGVDKKDI-RKESLVIKRVLESHQTSVSASQAIINTGE 240

Query: 241 FMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSD-DKKPLKDI 300
            +RRFCS L ++ + + A  EAV+K+E FDIRR+P S+ AA+I++I+ +S  ++KP+++I
Sbjct: 241 LVRRFCSKLDISQREIMAIPEAVEKAENFDIRRNPKSVLAAIIFMISHISQTNRKPIREI 300

Query: 301 SVATGVAEGTIRNSYKDLYPHVSKIIPGWYAKEEDL 324
            +   V E TI+NS KD+YP+  KIIP WYA E D+
Sbjct: 301 GIVAEVVENTIKNSVKDMYPYALKIIPNWYACESDI 318

[Close]

BLAST of Carg24989 vs. TAIR 10
Match: AT3G57370.1 (Cyclin family protein )

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-40
Identity = 126/382 (32.98%), Postives = 183/382 (47.91%), Query Frame = 0


Query: 6   CSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
           C  CK Q  VV DH    T C  CGL  +   I + S          +ND VR+  PTN 
Sbjct: 9   CRRCK-QINVVTDHVTRRTRCFGCGLEFKYRPIGDLS-------PVAENDTVRLPDPTNT 68

Query: 66  LLADGGLSTVI-------------------AKP-------------NGTSGEFLS----- 125
           LL++  LS V                    +KP             NG+S +FLS     
Sbjct: 69  LLSNTDLSIVTTEHKNGSFDDSLSLNLGNSSKPRLDPVSIATAKLMNGSSNDFLSLGTSQ 128

Query: 126 --------------SSLGRWQNRGSNP------DRGLILAFKTIATMSDRLGLVATIKVT 185
                         S LG  Q    +P           L+  +I  +S+ L L ATIK  
Sbjct: 129 NSETITASSDEFLFSDLGHLQKFSFDPLSMASTKPNKALSIVSIEAISNGLKLPATIK-- 188

Query: 186 CQYRMIMQYSEGWNNDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 245
                           +ANEI+K VE    +RG+ ++ L AAC+YIACR  D  RT++EI
Sbjct: 189 ---------------GQANEIFKVVESY--ARGKERNVLFAACIYIACRDNDMTRTMREI 248

Query: 246 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 305
              AN A+  +I     +I ++L +     +   +I   +F++RFCS   ++ +AV+AA 
Sbjct: 249 SRFANKASISDISETVGFIAEKLEINKNWYM---SIETANFIKRFCSIFRLDKEAVEAAL 308

Query: 306 EAVQKSEEF-DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYP 330
           EA +  +   + RR+P+S+AA ++Y+I +LS +K  LK +  ATGVAE TI+ +Y DLYP
Sbjct: 309 EAAESYDYMTNGRRAPVSVAAGIVYVIARLSYEKHLLKGLIEATGVAENTIKGTYGDLYP 360

[Close]

BLAST of Carg24989 vs. TAIR 10
Match: AT4G36650.1 (plant-specific TFIIB-related protein )

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-17
Identity = 96/319 (30.09%), Postives = 147/319 (46.08%), Query Frame = 0


Query: 24  TVCSECGLVLESHSIDE----------------TSEWRTFANESGDNDPVRVGGPTNPLL 83
           T CS CG V+E                      TS+ +T A  S +++      P  P  
Sbjct: 23  TECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDLQTAAQPSPEDEE----DPFEPTG 82

Query: 84  ADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKV 143
                ST   +P   S  F  SSL  +    +  +R L LA  T  + S  + +V  ++ 
Sbjct: 83  FITAFSTWSLEP---SPIFARSSLS-FSGHLAELERTLELASSTSNSNSSTV-VVDNLRA 142

Query: 144 TCQYRMIMQYSE--GWNNDRANEIYKRVEDQKSS---RGRNQDALLAACLYIACRQEDKP 203
              Y  I+  +   G + D +   ++   D  S+   R R+ +AL  ACL  A R+  +P
Sbjct: 143 ---YMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATACLVQAIREAQEP 202

Query: 204 RTVKEICSVANGATKKEIGRAKEYIVKQLG--LETGQSVEMGTIHAGDFMRRFCSNLGMN 263
           RT++EI S+A    +KEIG+     +K LG  L+  Q +   +I     M RFC+ L +N
Sbjct: 203 RTLQEI-SIAANVQQKEIGK----YIKILGEALQLSQPINSNSISV--HMPRFCTLLQLN 262

Query: 264 NQAVKAAQE--AVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTI 318
             A + A     V  ++ F  RR+PISI+AA IY+  QL D +K   +I   TG+ E T+
Sbjct: 263 KSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITGLTEVTL 322

The following BLAST results are available for this feature:

BLAST of Carg24989 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033507.1	1.4e-186	100.00	Transcription initiation factor IIB-2, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_022152227.1	5.8e-172	94.83	transcription initiation factor IIB-2 [Momordica charantia] >XP_022928717.1 tran...	[more]
XP_004150610.1	2.2e-171	94.22	transcription initiation factor IIB-2 [Cucumis sativus] >XP_008455781.1 PREDICTE...	[more]
XP_022924909.1	3.7e-171	94.22	transcription initiation factor IIB-2-like [Cucurbita moschata] >XP_023518635.1 ...	[more]
XP_028766652.1	9.2e-170	93.62	transcription initiation factor IIB-2 [Prosopis alba]	[more]

BLAST of Carg24989 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS44	1.3e-166	89.97	Transcription initiation factor IIB-2 OS=Arabidopsis thaliana OX=3702 GN=TFIIB2 ...	[more]
P48513	1.9e-165	90.61	Transcription initiation factor IIB OS=Glycine max OX=3847 GN=TFIIB1 PE=2 SV=1	[more]
Q8W0W3	3.0e-155	82.98	Transcription initiation factor IIB OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
P48512	1.4e-152	82.37	Transcription initiation factor IIB-1 OS=Arabidopsis thaliana OX=3702 GN=TFIIB1 ...	[more]
Q9LIA6	9.3e-64	42.56	Plant-specific TFIIB-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=PBRP2 ...	[more]

BLAST of Carg24989 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVL0	2.8e-172	94.83	transcription initiation factor IIB-2 OS=Cucurbita maxima OX=3661 GN=LOC11146723...	[more]
A0A6J1DFL4	2.8e-172	94.83	transcription initiation factor IIB-2 OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6J1EKQ3	2.8e-172	94.83	transcription initiation factor IIB-2 OS=Cucurbita moschata OX=3662 GN=LOC111435...	[more]
A0A5D3E1U7	1.1e-171	94.22	Transcription initiation factor IIB-2-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0KYQ5	1.1e-171	94.22	TFIIB-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G415910 ...	[more]

BLAST of Carg24989 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10330.1	9.2e-168	89.97	Cyclin-like family protein	[more]
AT2G41630.1	9.9e-154	82.37	transcription factor IIB	[more]
AT3G29380.1	6.6e-65	42.56	Cyclin-like family protein	[more]
AT3G57370.1	1.9e-40	32.98	Cyclin family protein	[more]
AT4G36650.1	1.3e-17	30.09	plant-specific TFIIB-related protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000812	Transcription factor TFIIB	PRINTS	PR00685	TIFACTORIIB	coord: 41..54 score: 50.0 coord: 229..247 score: 47.37 coord: 19..39 score: 54.6 coord: 55..76 score: 59.09 coord: 261..277 score: 60.78 coord: 293..307 score: 63.11 coord: 169..188 score: 68.0 coord: 196..211 score: 50.83
IPR000812	Transcription factor TFIIB	PANTHER	PTHR11618	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	coord: 3..329
IPR013763	Cyclin-like	SMART	SM00385	cyclin_7	coord: 132..209 e-value: 0.0047 score: 26.2 coord: 228..307 e-value: 4.3E-7 score: 39.6
IPR013763	Cyclin-like	CDD	cd00043	CYCLIN	coord: 224..306 e-value: 2.67407E-9 score: 51.4705
IPR013763	Cyclin-like	CDD	cd00043	CYCLIN	coord: 146..202 e-value: 2.12846E-11 score: 57.6336
None	No IPR available	GENE3D	1.10.472.10		coord: 225..328 e-value: 1.3E-32 score: 113.9
None	No IPR available	GENE3D	1.10.472.170		coord: 5..210 e-value: 4.5E-59 score: 201.6
None	No IPR available	PANTHER	PTHR11618:SF69	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	coord: 3..329
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 4..50
IPR013150	Transcription factor TFIIB, cyclin-like domain	PFAM	PF00382	TFIIB	coord: 144..193 e-value: 3.2E-15 score: 55.9 coord: 230..298 e-value: 5.0E-9 score: 36.1
IPR013137	Zinc finger, TFIIB-type	PFAM	PF08271	TF_Zn_Ribbon	coord: 6..47 e-value: 6.3E-15 score: 54.4
IPR013137	Zinc finger, TFIIB-type	PROSITE	PS51134	ZF_TFIIB	coord: 2..34 score: 9.105444
IPR023486	Transcription factor TFIIB, conserved site	PROSITE	PS00782	TFIIB	coord: 161..176
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 144..213
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 224..325

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24989-RA	Carg24989-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070897	transcription preinitiation complex assembly
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005634	nucleus
cellular_component	GO:0097550	transcription preinitiation complex
molecular_function	GO:0017025	TBP-class protein binding