Carg24686 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24686
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 5933357 .. 5934893 (-)
RNA-Seq ExpressionCarg24686
SyntenyCarg24686
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTCCTTGGATGCTCTTGGTGTACCTTTTCTCATAAGCACGATGTTTCTTTTGTTTTTTTGGCTGCAGTTGTGATGTAAATTAGATGAGAAGCTTTATAGTTATCCAAATCTATTGGCAACTCATATTTTTCCCTTTGTTTGTTTGTTCGTTTTCTTTTGAGCATGTACATATCGTTTTGGGCAATAATTTCAGAACAGAGTTGTTGGAGAAATGTTAATTCAAGTAAAATGTAGGCTGAAAGATAGAAGGGCTGTCGGTATTGGTAAACTCGGGTGAGTTCTAGTTTAACCTTACTCTTTGGATATTGTCATAAAGAGAACCCCTTTGGTTTGACTTATGGGAGGCTTGTAAGGTATCCTATTATAATCTAACCTATATGAAAAATGGTAATGTAATCGGTGGCAACAACACTCTGAAGTTTCAATTCAAGGTCGCATATCTAGAGCATAGAGAAAATTGCATGCATGTTATTGAACAAAATCCGTAGCAACAAAGAGATGCCTAATAACAATTCAATTTCTCAAAACAATAACTCTCAGCATATCCAGAAAAGATGGCCGCGTTGCATTAACAATGATCAAAACTTGTTTTAAAAAGGTATCTTACAAAGATTAACAGGAAAGATGAAAAACCTCGTAAGTCTTACAAGGTGTCCTCTCAGATACCAGTCATTGAGCTGTATAGTCGATTCAAATTTGTCTTCCCAATTTTTATGTCACAAAGGTGTTGCAAATCCTGTAAGATTAGGTATAATGATGAAGTTAGGATATGAACTCATGCTATACTAGATATGTACGAGTATGGATGACCATTGAAGATGAAAGTTATGGATTATCATTACTCTTAGTGTAATTCATAACCTGAGAGTAAATACACAAAAGATGCAATATTAGCCAATATTGGTATCAATTTTGCTTTTAGTTCTCCATGTTTTATGGATAAGAAGCTTATATGGACTCTTTTTGGTCATATTTACGTTTTTGGTTTTTGAAATTGGGCGAACATCTCAAAACTCAAAAGAATTCTTCTAATAAGAAACTAAACAAAGTTATTAGTAAACATGAACTATTTTACTTTTTTCAAAAACAAAAAGATGATAACAAAATTGTTCTCAGACCAGGGTTGAGAGTTCAAGGCAATCAAAATTCAAAGCACATAGCATATTCTATGCAGGTAAGAAGACCATTGCCGAACTTCTTCCACTTCCTTTAAGAGATAAAACTGGGAAAGAGCAACAATATTGCAAAATTTCTTGATAGAAGCGTTGTAGCACATCGAGAACATAACAGAGAGTTAACAAAACAAGATCCGAAATCATATGAACAAAAATCCTCTCCGTATCGTGGAAGGAAATGCACATAATTATAAGAACAGCTTATATAGAGAAACGGCGAATAAAAAACCTTCAGAAAGCCAGCTCCAGCAATGCGAATCGACGGCAATTTTGGACTTCAACCGAGCTGAGGCGACGGCGCTATGGAGTGGCATCAGAGACTCCACAGTAGCCAAAGACGAAACAATCCTAGAGTAA

mRNA sequence

ATGGTCTCCTTGGATGCTCTTGGTGTACCTTTTCTCATAAGCACGATAGAAACGGCGAATAAAAAACCTTCAGAAAGCCAGCTCCAGCAATGCGAATCGACGGCAATTTTGGACTTCAACCGAGCTGAGGCGACGGCGCTATGGAGTGGCATCAGAGACTCCACAGTAGCCAAAGACGAAACAATCCTAGAGTAA

Coding sequence (CDS)

ATGGTCTCCTTGGATGCTCTTGGTGTACCTTTTCTCATAAGCACGATAGAAACGGCGAATAAAAAACCTTCAGAAAGCCAGCTCCAGCAATGCGAATCGACGGCAATTTTGGACTTCAACCGAGCTGAGGCGACGGCGCTATGGAGTGGCATCAGAGACTCCACAGTAGCCAAAGACGAAACAATCCTAGAGTAA

Protein sequence

MVSLDALGVPFLISTIETANKKPSESQLQQCESTAILDFNRAEATALWSGIRDSTVAKDETILE
Homology
[Close]
BLAST of Carg24686 vs. NCBI nr
Match: KAG7022287.1 (hypothetical protein SDJN02_16018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-25
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MVSLDALGVPFLISTIETANKKPSESQLQQCESTAILDFNRAEATALWSGIRDSTVAKDE 60
          MVSLDALGVPFLISTIETANKKPSESQLQQCESTAILDFNRAEATALWSGIRDSTVAKDE
Sbjct: 1  MVSLDALGVPFLISTIETANKKPSESQLQQCESTAILDFNRAEATALWSGIRDSTVAKDE 60

Query: 61 TILE 65
          TILE
Sbjct: 61 TILE 64

The following BLAST results are available for this feature:
BLAST of Carg24686 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022287.12.1e-25100.00hypothetical protein SDJN02_16018, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg24686 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24686 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24686 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24686-RACarg24686-RAmRNA