Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGGTACTCCGTCGGTGAAATGAAATTCCGAGCACTTCCATCTCCGACGATTCTCGAAGGCCTGCATTCGTCGTCAACGCAGCCAATGCTCCAGTTCTAATTCTTAACCTAGATTCAGAGGTCTGCGTGCTTCTGAAATTGGAATTTACGCGAGTTCAGGCTGAGGATTTGAGATCTAAGTTGTGATGACGAGCTAGGATTGTCGAGTTTATCACGAGAGGCAAAAACTACAGTTCTGCCTCTTGCACGCGCTCAACAACCTTTTTCAGGTACCTTCACTATCGAATGTTTGACTGTGGAAAAGTTGCTGAACGCTCTCTGATTGGTTGCGATGAAAAAAATCGTTCAATCTTGGAATTTATGATTTGCAATGTAATTAAGATGCAGATGAACGGAATTATACTGTTTTTTTCGTCATTAAGAAAGGATTATGGTGCATAGAGTCTCAGAATTCGAACTTATCGTCTCACTATTTCACGATTTGTTGCTTTCCTTTTGTAATTCAATGTCTTCTTACTGCTAAATCGTTAATCAACATTTAAACGCCTCTTAAAACAGGAAAATGATGCATTTACTCGAGCCAACTTAAATGCAACAGCTGAAAAACTGGTGCTCGAGGAGCCAAACAAAGAACCTTGGACACCATTATCATTTGTCTTTAAGTCTCATCACAACACAGTAACTGGAAATTATGACATAACCATCGAAATAGAGCTTCTTCAATCGATTTGGATGGGCCTGAGGCTACTCATAAGGTTATGGTTTGATGGCATTTGGAATAGTAGGCACTGGGATACACCGGGAAAGATAAACGAATTGTGGTATAATTTGGACAGTGATCTGCTTGATCCTCATCCGTTTAAGGATATTGATGAAGTAAGACAATTTTTGGATCATGTGATTGGTGACAATGGGGAAATTTTGTTTGTTATAAATGACAGGAACTGA
mRNA sequence
ATGGCGAAGGAAAATGATGCATTTACTCGAGCCAACTTAAATGCAACAGCTGAAAAACTGGTGCTCGAGGAGCCAAACAAAGAACCTTGGACACCATTATCATTTGTCTTTAAGTCTCATCACAACACAGTAACTGGAAATTATGACATAACCATCGAAATAGAGCTTCTTCAATCGATTTGGATGGGCCTGAGGCTACTCATAAGGTTATGGTTTGATGGCATTTGGAATAGTAGGCACTGGGATACACCGGGAAAGATAAACGAATTGTGGTATAATTTGGACAGTGATCTGCTTGATCCTCATCCGTTTAAGGATATTGATGAAGTAAGACAATTTTTGGATCATGTGATTGGTGACAATGGGGAAATTTTGTTTGTTATAAATGACAGGAACTGA
Coding sequence (CDS)
ATGGCGAAGGAAAATGATGCATTTACTCGAGCCAACTTAAATGCAACAGCTGAAAAACTGGTGCTCGAGGAGCCAAACAAAGAACCTTGGACACCATTATCATTTGTCTTTAAGTCTCATCACAACACAGTAACTGGAAATTATGACATAACCATCGAAATAGAGCTTCTTCAATCGATTTGGATGGGCCTGAGGCTACTCATAAGGTTATGGTTTGATGGCATTTGGAATAGTAGGCACTGGGATACACCGGGAAAGATAAACGAATTGTGGTATAATTTGGACAGTGATCTGCTTGATCCTCATCCGTTTAAGGATATTGATGAAGTAAGACAATTTTTGGATCATGTGATTGGTGACAATGGGGAAATTTTGTTTGTTATAAATGACAGGAACTGA
Protein sequence
MAKENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN
Homology
BLAST of Carg23842 vs. NCBI nr
Match:
KAG7035373.1 (Josephin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 282.7 bits (722), Expect = 1.6e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
Query: 1 MAKENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSI 60
MAKENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSI
Sbjct: 1 MAKENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSI 60
Query: 61 WMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGD 120
WMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGD
Sbjct: 61 WMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGD 120
Query: 121 NGEILFVINDRN 133
NGEILFVINDRN
Sbjct: 121 NGEILFVINDRN 132
BLAST of Carg23842 vs. NCBI nr
Match:
XP_022947023.1 (josephin-like protein [Cucurbita moschata] >XP_022947024.1 josephin-like protein [Cucurbita moschata])
HSP 1 Score: 270.4 bits (690), Expect = 8.2e-69
Identity = 125/130 (96.15%), Postives = 128/130 (98.46%), Query Frame = 0
Query: 3 KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWM 62
+ENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFK HHNTVTGNYDITIEIELLQSIWM
Sbjct: 28 QENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKPHHNTVTGNYDITIEIELLQSIWM 87
Query: 63 GLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGDNG 122
GLRLL++LWFDGIWNSRHWDTPGKINELWYNLDSDLL PHPFKDIDEVRQFLDHVIGDNG
Sbjct: 88 GLRLLMKLWFDGIWNSRHWDTPGKINELWYNLDSDLLAPHPFKDIDEVRQFLDHVIGDNG 147
Query: 123 EILFVINDRN 133
EILFVINDRN
Sbjct: 148 EILFVINDRN 157
BLAST of Carg23842 vs. NCBI nr
Match:
XP_023532315.1 (josephin-like protein [Cucurbita pepo subsp. pepo])
HSP 1 Score: 254.2 bits (648), Expect = 6.1e-64
Identity = 120/130 (92.31%), Postives = 123/130 (94.62%), Query Frame = 0
Query: 3 KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWM 62
+ENDAFTRANLNATAEKLV EEPNKEPWTPLSFVFK +H TVTGNYDITIEIELLQSIWM
Sbjct: 28 QENDAFTRANLNATAEKLVFEEPNKEPWTPLSFVFKPYHTTVTGNYDITIEIELLQSIWM 87
Query: 63 GLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGDNG 122
GLRLLI LWFDGIWNSRHWD PGKINELWYNLDSDLL HPFKDIDEVRQFLDHVIGDNG
Sbjct: 88 GLRLLINLWFDGIWNSRHWDAPGKINELWYNLDSDLL-AHPFKDIDEVRQFLDHVIGDNG 147
Query: 123 EILFVINDRN 133
EILFVINDR+
Sbjct: 148 EILFVINDRS 156
BLAST of Carg23842 vs. NCBI nr
Match:
KAG6605424.1 (Josephin-like protein, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 251.9 bits (642), Expect = 3.0e-63
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0
Query: 3 KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWM 62
+ENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWM
Sbjct: 53 QENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWM 112
Query: 63 GLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIG 120
GLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIG
Sbjct: 113 GLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIG 169
BLAST of Carg23842 vs. NCBI nr
Match:
XP_038902688.1 (josephin-like protein [Benincasa hispida] >XP_038902689.1 josephin-like protein [Benincasa hispida])
HSP 1 Score: 180.3 bits (456), Expect = 1.1e-41
Identity = 94/157 (59.87%), Postives = 106/157 (67.52%), Query Frame = 0
Query: 3 KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS--- 62
+E DAFTRANLNA AEKLVL+EPN+E WTPLSFVFK HHNTVTGNYDI + I L+
Sbjct: 28 QEKDAFTRANLNAIAEKLVLDEPNEERWTPLSFVFKPHHNTVTGNYDINVLISALEEKGK 87
Query: 63 --IW---------------------MGLRLLIRL-WFDGIWNSRHWDTPGKINELWYNLD 122
+W MG+ L + + F GIW SRHW KIN LWYNLD
Sbjct: 88 IVVWHDHRNGASSIDLDGPEDTHKLMGIVLNVSVRRFGGIWKSRHWVALRKINGLWYNLD 147
Query: 123 SDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN 133
SDL PHPFKD DEVRQFLDHVIG+NGEIL ++NDRN
Sbjct: 148 SDLPAPHPFKDTDEVRQFLDHVIGNNGEILLIMNDRN 184
BLAST of Carg23842 vs. ExPASy Swiss-Prot
Match:
O82391 (Josephin-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g29640 PE=2 SV=1)
HSP 1 Score: 124.4 bits (311), Expect = 9.6e-28
Identity = 64/137 (46.72%), Postives = 83/137 (60.58%), Query Frame = 0
Query: 3 KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS--- 62
++ DAFT+ +LN+ AEKL +PNKE WTPLSFV K HHNT+TGNYD+ + I L+
Sbjct: 28 QDKDAFTKESLNSIAEKLETNDPNKETWTPLSFVLKPHHNTITGNYDVNVMITALEGKGK 87
Query: 63 --IW------------------MGLRLLIRL-WFDGIWNSRHWDTPGKINELWYNLDSDL 116
+W MG+ L + + + G+W SRHW KIN +WYNLDSDL
Sbjct: 88 SVVWHDKRIGASSIDLDDADTLMGIVLNVPVKRYGGLWRSRHWVVVRKINGVWYNLDSDL 147
BLAST of Carg23842 vs. ExPASy TrEMBL
Match:
A0A6J1G5H0 (Ubiquitinyl hydrolase 1 OS=Cucurbita moschata OX=3662 GN=LOC111451025 PE=4 SV=1)
HSP 1 Score: 270.4 bits (690), Expect = 4.0e-69
Identity = 125/130 (96.15%), Postives = 128/130 (98.46%), Query Frame = 0
Query: 3 KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWM 62
+ENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFK HHNTVTGNYDITIEIELLQSIWM
Sbjct: 28 QENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKPHHNTVTGNYDITIEIELLQSIWM 87
Query: 63 GLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGDNG 122
GLRLL++LWFDGIWNSRHWDTPGKINELWYNLDSDLL PHPFKDIDEVRQFLDHVIGDNG
Sbjct: 88 GLRLLMKLWFDGIWNSRHWDTPGKINELWYNLDSDLLAPHPFKDIDEVRQFLDHVIGDNG 147
Query: 123 EILFVINDRN 133
EILFVINDRN
Sbjct: 148 EILFVINDRN 157
BLAST of Carg23842 vs. ExPASy TrEMBL
Match:
A0A6J1JI12 (Ubiquitinyl hydrolase 1 OS=Cucurbita maxima OX=3661 GN=LOC111484533 PE=4 SV=1)
HSP 1 Score: 179.1 bits (453), Expect = 1.2e-41
Identity = 94/157 (59.87%), Postives = 107/157 (68.15%), Query Frame = 0
Query: 3 KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS--- 62
+EN+AFTRA+LNA AEKLVL+EPNKEPWTPLSFVFK HHN+VTGNYDI + I L+
Sbjct: 28 QENNAFTRAHLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNSVTGNYDINVLISALEEKGK 87
Query: 63 --IW---------------------MGLRLLIRL-WFDGIWNSRHWDTPGKINELWYNLD 122
+W MG+ L + + F GIW SRHW KINELWYNLD
Sbjct: 88 SVVWHDHRNGASSIDLDGPEATHKLMGIVLNVPVRRFGGIWKSRHWVALRKINELWYNLD 147
Query: 123 SDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN 133
SDL PH FKD DEVRQFLD+VI DNGEIL V+NDRN
Sbjct: 148 SDLPTPHTFKDTDEVRQFLDNVINDNGEILLVMNDRN 184
BLAST of Carg23842 vs. ExPASy TrEMBL
Match:
A0A6J1FYW5 (Ubiquitinyl hydrolase 1 OS=Cucurbita moschata OX=3662 GN=LOC111449101 PE=4 SV=1)
HSP 1 Score: 175.6 bits (444), Expect = 1.3e-40
Identity = 91/157 (57.96%), Postives = 106/157 (67.52%), Query Frame = 0
Query: 3 KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS--- 62
+ENDAFTRA+LNA +EKLVL+EPN+EPWTPLSFVFK HHN+VTGNYDI + I ++
Sbjct: 28 QENDAFTRAHLNAISEKLVLDEPNREPWTPLSFVFKPHHNSVTGNYDINVLISAMEEKGK 87
Query: 63 --IW---------------------MGLRLLIRL-WFDGIWNSRHWDTPGKINELWYNLD 122
+W MG+ L + + F GIW SRHW KINE WYNLD
Sbjct: 88 SVVWHDHRNGASSIDLDGPEATHKLMGIVLNVPVRRFGGIWKSRHWVALRKINESWYNLD 147
Query: 123 SDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN 133
SDL PH FKD DEVRQFLD+VI DNGEIL V+NDRN
Sbjct: 148 SDLHTPHTFKDTDEVRQFLDNVINDNGEILLVMNDRN 184
BLAST of Carg23842 vs. ExPASy TrEMBL
Match:
A0A0A0KBN9 (Ubiquitinyl hydrolase 1 OS=Cucumis sativus OX=3659 GN=Csa_6G187930 PE=4 SV=1)
HSP 1 Score: 173.3 bits (438), Expect = 6.6e-40
Identity = 91/157 (57.96%), Postives = 103/157 (65.61%), Query Frame = 0
Query: 3 KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS--- 62
+E DAFTRANLNA AEKLV + PN+E WTPLS VFK HHNTVTGNYDI + I L+
Sbjct: 28 QEKDAFTRANLNAIAEKLVRDVPNQETWTPLSIVFKPHHNTVTGNYDINVLISALEEKGK 87
Query: 63 --IW---------------------MGLRLLIRL-WFDGIWNSRHWDTPGKINELWYNLD 122
+W MG+ L + + F GIW SRHW KI+ LWYNLD
Sbjct: 88 SVVWHDHRNGAFSIDLDGPDHTCKLMGIVLNVSVRRFGGIWKSRHWVALRKIDGLWYNLD 147
Query: 123 SDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN 133
SDL DPHPFKD DE+RQFLDHVI DNGEIL V+NDRN
Sbjct: 148 SDLPDPHPFKDTDELRQFLDHVINDNGEILLVMNDRN 184
BLAST of Carg23842 vs. ExPASy TrEMBL
Match:
A0A1S4E4I3 (Ubiquitinyl hydrolase 1 OS=Cucumis melo OX=3656 GN=LOC103502098 PE=4 SV=1)
HSP 1 Score: 171.4 bits (433), Expect = 2.5e-39
Identity = 90/157 (57.32%), Postives = 103/157 (65.61%), Query Frame = 0
Query: 3 KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS--- 62
+E DAFTRANLNA AEKLV +EPN+E WTPLS VFK HHNTVTGNYDI + I L+
Sbjct: 29 QEKDAFTRANLNAIAEKLVRDEPNQETWTPLSIVFKPHHNTVTGNYDINVLISALEEKGK 88
Query: 63 --IW---------------------MGLRLLIRL-WFDGIWNSRHWDTPGKINELWYNLD 122
+W MG+ L + + F GIW SRHW KI+ LWYNLD
Sbjct: 89 SVVWHDHRNGASTIDLDGPDDTRKLMGIVLNVSVRRFGGIWKSRHWVALRKIDGLWYNLD 148
Query: 123 SDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN 133
SDL PHPFKD +EVR+FLDHVI DNGEIL V+NDRN
Sbjct: 149 SDLPAPHPFKDTEEVREFLDHVINDNGEILLVMNDRN 185
BLAST of Carg23842 vs. TAIR 10
Match:
AT2G29640.1 (JOSEPHIN-like protein )
HSP 1 Score: 124.4 bits (311), Expect = 6.8e-29
Identity = 64/137 (46.72%), Postives = 83/137 (60.58%), Query Frame = 0
Query: 3 KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS--- 62
++ DAFT+ +LN+ AEKL +PNKE WTPLSFV K HHNT+TGNYD+ + I L+
Sbjct: 28 QDKDAFTKESLNSIAEKLETNDPNKETWTPLSFVLKPHHNTITGNYDVNVMITALEGKGK 87
Query: 63 --IW------------------MGLRLLIRL-WFDGIWNSRHWDTPGKINELWYNLDSDL 116
+W MG+ L + + + G+W SRHW KIN +WYNLDSDL
Sbjct: 88 SVVWHDKRIGASSIDLDDADTLMGIVLNVPVKRYGGLWRSRHWVVVRKINGVWYNLDSDL 147
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7035373.1 | 1.6e-72 | 100.00 | Josephin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
XP_022947023.1 | 8.2e-69 | 96.15 | josephin-like protein [Cucurbita moschata] >XP_022947024.1 josephin-like protein... | [more] |
XP_023532315.1 | 6.1e-64 | 92.31 | josephin-like protein [Cucurbita pepo subsp. pepo] | [more] |
KAG6605424.1 | 3.0e-63 | 99.15 | Josephin-like protein, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_038902688.1 | 1.1e-41 | 59.87 | josephin-like protein [Benincasa hispida] >XP_038902689.1 josephin-like protein ... | [more] |
Match Name | E-value | Identity | Description | |
O82391 | 9.6e-28 | 46.72 | Josephin-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g29640 PE=2 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1G5H0 | 4.0e-69 | 96.15 | Ubiquitinyl hydrolase 1 OS=Cucurbita moschata OX=3662 GN=LOC111451025 PE=4 SV=1 | [more] |
A0A6J1JI12 | 1.2e-41 | 59.87 | Ubiquitinyl hydrolase 1 OS=Cucurbita maxima OX=3661 GN=LOC111484533 PE=4 SV=1 | [more] |
A0A6J1FYW5 | 1.3e-40 | 57.96 | Ubiquitinyl hydrolase 1 OS=Cucurbita moschata OX=3662 GN=LOC111449101 PE=4 SV=1 | [more] |
A0A0A0KBN9 | 6.6e-40 | 57.96 | Ubiquitinyl hydrolase 1 OS=Cucumis sativus OX=3659 GN=Csa_6G187930 PE=4 SV=1 | [more] |
A0A1S4E4I3 | 2.5e-39 | 57.32 | Ubiquitinyl hydrolase 1 OS=Cucumis melo OX=3656 GN=LOC103502098 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT2G29640.1 | 6.8e-29 | 46.72 | JOSEPHIN-like protein | [more] |