Carg23248 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23248
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	light-harvesting complex-like protein 3 isotype 1, chloroplastic
Location	Carg_Chr16: 8954643 .. 8956710 (-)
RNA-Seq Expression	Carg23248
Synteny	Carg23248

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGCTTCCCTATCCATCACAATTACAAGGCTGAGGATAGAGGAGGAGCTCTCTCTTCTTCCTTCCACACCAAAACAATGTCTTCCATGGCTTTGTTTTCTCCTCCTTCCCGTCTTTCCTCTCTCTCTCCTTCTTCACATCACCGAAGCCACTTCCCCTCCAGACCCTTTTCCTCTCTCAGGTCCAGAAACCCTTCTTCTTGGGTCGCTGCTGACAATGGCGCCGGAATTTCAGGTGGTTCCGTCGCTGTAGGACCCGCCGTCGTACAGAAGGATCCGGAGCCGGTGGTGGAAAAGCAAGAGAGCCTTGCTGAAACCAATGGGTCGGTGGCGGCTGTGGAAGAAGTGGTGGTGGTTAGCAAATTTGAAGACCCTAAATGGGTTAATGGAACTTGGGATTTGAATCAGTTCCGGAAAGATGGAAGTACTGATTGGGATGCTGTTATTGATGCCGGTAATCTTCGTAAACCCTACTTTTTCTGTTGATTTTGCTTCTAATTGCATTATGAAATCTGGATGTACATAGATACATGCAATGTCTGAGAAGCTTTTTGGGGGAAATCTTGATTCTGCAAGTTTTGATGATGTTTTGATTGTAATGAATTTCTTGGTGATGTTTGAGCAATTACTTGATGTTTGAATCAGAGGCTAGGAGGAGGAAATGGCTGGAAAACAATCCAGAATCATCAAGTAATGAGGACCCTGTGCTGTTTGACACATCCATAGTTCCTTGGTGGGCTTGGATTAAGCGCTACCATCTGCCAGAGGCTGAGATTCTCAATGGTATAAACAGGTTTCTATGATTGTTTATCCTGTTTTCTTGAAGCTTGTCTGTTTGATATAAATGGCTAAACGTGAGTGTATGAAAATCGTTTTTAAAAGTGTACAAACTAATGTTAAGTTGATTTTGAATGTTGAAACGCATGTTTTTGAGTGATTTTAGACGTGAATGACTGATTTTAACCATTTGAAAGTCACTCGAACATGTTTTTGTTCTTTTGTTCATGTCTGTGAATCATGATTTCTACTTGTTCATAGCATTGGCTTCTCTGTATGAAAATCATGTTTAGAAGTGTGAAATCATACATGGAAGTTGATTTTGAATGTTTAAACACATGTTCTTGAGTGATTTTGAGCATGTTCTTGAGTGATTTTGAACGTGAAGGACCAATTTTAACCATTTGAAAATCACACAAACGTATTTTTTGTTCTTTCTTTCACATCTGTGGATCATGATTTCTACTTGTTCATAGCATTGGCTTCTCCGTATGAAAATCATGTTTAAAAGCGTAAAATCATACATTAAGATGATTTTGTATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAACGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAAACGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCCTTTGAAAATCACTCAACGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGAGTGATTTTGAACGTAAATGACTGGTTTTACCCATTTGAAAATCACTCAAAACATATTTTTGTTCTTTCGCTCATGTCTGTGAATCATGATTTCGACGCAGGGCGTGCAGCCATGGTGGGGTTTTTCATGGCTTACTTCGTCGATAGCTTGACGGGGGTAGGACTAGTAGGTCAAATGGGCAACTTCTTCTGCAAAACTTTGTTATTTATTGCAGTGGTGGGAGTTCTTTTGATCAGAAAGAACGAAGATATAGAGACTCTAAAGAAGTTGATTGATGAGACGACATTTTATGATAAACAATGGCAAGCAACTTGGCAGGATGAAACCAAAGGCTCAGGCAAAGTGTAATGTGGCAAAGTTGCCTGTGTTCTTGTTTTGCTTTAATTATGTTTGTATCTCTTAAGATTTGGGCTTAGTAGAGACGGATAATGTGAGCTCTGAAAGATATTCAATGTTTAGGCCTCAGTTTGTTC

mRNA sequence

AAAGCTTCCCTATCCATCACAATTACAAGGCTGAGGATAGAGGAGGAGCTCTCTCTTCTTCCTTCCACACCAAAACAATGTCTTCCATGGCTTTGTTTTCTCCTCCTTCCCGTCTTTCCTCTCTCTCTCCTTCTTCACATCACCGAAGCCACTTCCCCTCCAGACCCTTTTCCTCTCTCAGGTCCAGAAACCCTTCTTCTTGGGTCGCTGCTGACAATGGCGCCGGAATTTCAGGTGGTTCCGTCGCTGTAGGACCCGCCGTCGTACAGAAGGATCCGGAGCCGGTGGTGGAAAAGCAAGAGAGCCTTGCTGAAACCAATGGGTCGGTGGCGGCTGTGGAAGAAGTGGTGGTGGTTAGCAAATTTGAAGACCCTAAATGGGTTAATGGAACTTGGGATTTGAATCAGTTCCGGAAAGATGGAAGTACTGATTGGGATGCTGTTATTGATGCCGAGGCTAGGAGGAGGAAATGGCTGGAAAACAATCCAGAATCATCAAGTAATGAGGACCCTGTGCTGTTTGACACATCCATAGTTCCTTGGTGGGCTTGGATTAAGCGCTACCATCTGCCAGAGGCTGAGATTCTCAATGGGCGTGCAGCCATGGTGGGGTTTTTCATGGCTTACTTCGTCGATAGCTTGACGGGGGTAGGACTAGTAGGTCAAATGGGCAACTTCTTCTGCAAAACTTTGTTATTTATTGCAGTGGTGGGAGTTCTTTTGATCAGAAAGAACGAAGATATAGAGACTCTAAAGAAGTTGATTGATGAGACGACATTTTATGATAAACAATGGCAAGCAACTTGGCAGGATGAAACCAAAGGCTCAGGCAAAGTGTAATGTGGCAAAGTTGCCTGTGTTCTTGTTTTGCTTTAATTATGTTTGTATCTCTTAAGATTTGGGCTTAGTAGAGACGGATAATGTGAGCTCTGAAAGATATTCAATGTTTAGGCCTCAGTTTGTTC

Coding sequence (CDS)

ATGTCTTCCATGGCTTTGTTTTCTCCTCCTTCCCGTCTTTCCTCTCTCTCTCCTTCTTCACATCACCGAAGCCACTTCCCCTCCAGACCCTTTTCCTCTCTCAGGTCCAGAAACCCTTCTTCTTGGGTCGCTGCTGACAATGGCGCCGGAATTTCAGGTGGTTCCGTCGCTGTAGGACCCGCCGTCGTACAGAAGGATCCGGAGCCGGTGGTGGAAAAGCAAGAGAGCCTTGCTGAAACCAATGGGTCGGTGGCGGCTGTGGAAGAAGTGGTGGTGGTTAGCAAATTTGAAGACCCTAAATGGGTTAATGGAACTTGGGATTTGAATCAGTTCCGGAAAGATGGAAGTACTGATTGGGATGCTGTTATTGATGCCGAGGCTAGGAGGAGGAAATGGCTGGAAAACAATCCAGAATCATCAAGTAATGAGGACCCTGTGCTGTTTGACACATCCATAGTTCCTTGGTGGGCTTGGATTAAGCGCTACCATCTGCCAGAGGCTGAGATTCTCAATGGGCGTGCAGCCATGGTGGGGTTTTTCATGGCTTACTTCGTCGATAGCTTGACGGGGGTAGGACTAGTAGGTCAAATGGGCAACTTCTTCTGCAAAACTTTGTTATTTATTGCAGTGGTGGGAGTTCTTTTGATCAGAAAGAACGAAGATATAGAGACTCTAAAGAAGTTGATTGATGAGACGACATTTTATGATAAACAATGGCAAGCAACTTGGCAGGATGAAACCAAAGGCTCAGGCAAAGTGTAA

Protein sequence

MSSMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVGPAVVQKDPEPVVEKQESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQATWQDETKGSGKV

Homology

[Close]

BLAST of Carg23248 vs. NCBI nr
Match: KAG7015695.1 (Light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 506.9 bits (1304), Expect = 1.0e-139
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 1   MSSMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVGP 60
           MSSMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVGP
Sbjct: 1   MSSMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVGP 60

Query: 61  AVVQKDPEPVVEKQESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120
           AVVQKDPEPVVEKQESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD
Sbjct: 61  AVVQKDPEPVVEKQESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120

Query: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180
           AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF
Sbjct: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180

Query: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240
           MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ
Sbjct: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240

Query: 241 ATWQDETKGSGKV 254
           ATWQDETKGSGKV
Sbjct: 241 ATWQDETKGSGKV 253

[Close]

BLAST of Carg23248 vs. NCBI nr
Match: KAG6577656.1 (Light-harvesting complex-like protein 3 isotype 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 501.5 bits (1290), Expect = 4.2e-138
Identity = 251/253 (99.21%), Postives = 251/253 (99.21%), Query Frame = 0


Query: 1   MSSMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVGP 60
           MSSMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAV P
Sbjct: 1   MSSMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVEP 60

Query: 61  AVVQKDPEPVVEKQESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120
           AVVQKDPEPVVEKQE LAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD
Sbjct: 61  AVVQKDPEPVVEKQEILAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120

Query: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180
           AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF
Sbjct: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180

Query: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240
           MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ
Sbjct: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240

Query: 241 ATWQDETKGSGKV 254
           ATWQDETKGSGKV
Sbjct: 241 ATWQDETKGSGKV 253

[Close]

BLAST of Carg23248 vs. NCBI nr
Match: XP_022965154.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 499.2 bits (1284), Expect = 2.1e-137
Identity = 248/253 (98.02%), Postives = 251/253 (99.21%), Query Frame = 0


Query: 1   MSSMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVGP 60
           MSSMALFSPPSRLSSLSPSSHHR+HFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAV P
Sbjct: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVEP 60

Query: 61  AVVQKDPEPVVEKQESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120
           AVVQKDPEP VEK+ESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD
Sbjct: 61  AVVQKDPEPAVEKKESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120

Query: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180
           AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF
Sbjct: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180

Query: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240
           MAYFVDSLTGVGLVGQMGNFFCKTLLF+AVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ
Sbjct: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240

Query: 241 ATWQDETKGSGKV 254
           ATWQDETKGSGKV
Sbjct: 241 ATWQDETKGSGKV 253

[Close]

BLAST of Carg23248 vs. NCBI nr
Match: XP_022923520.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 497.3 bits (1279), Expect = 7.9e-137
Identity = 249/253 (98.42%), Postives = 250/253 (98.81%), Query Frame = 0


Query: 1   MSSMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVGP 60
           MSSMALFSPPSRLSSLSPSSHHR+HFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAV  
Sbjct: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVES 60

Query: 61  AVVQKDPEPVVEKQESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120
           AVVQKDPEPVVEKQE LAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD
Sbjct: 61  AVVQKDPEPVVEKQEILAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120

Query: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180
           AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF
Sbjct: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180

Query: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240
           MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ
Sbjct: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240

Query: 241 ATWQDETKGSGKV 254
           ATWQDETKGSGKV
Sbjct: 241 ATWQDETKGSGKV 253

[Close]

BLAST of Carg23248 vs. NCBI nr
Match: XP_023552068.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 492.7 bits (1267), Expect = 2.0e-135
Identity = 246/253 (97.23%), Postives = 251/253 (99.21%), Query Frame = 0


Query: 1   MSSMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVGP 60
           MSSM+LFSPPSRLSSLSPSSHHR+HFPSRPFSSLRSRNPSSWVAA NGAGISGGS+AV P
Sbjct: 1   MSSMSLFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAA-NGAGISGGSIAVEP 60

Query: 61  AVVQKDPEPVVEKQESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120
           AVVQKDPEPVVEKQES+AETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD
Sbjct: 61  AVVQKDPEPVVEKQESVAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120

Query: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180
           AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF
Sbjct: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180

Query: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240
           MAYFVDSLTGVGLVGQMGNFFCKTLLF+AVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ
Sbjct: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240

Query: 241 ATWQDETKGSGKV 254
           ATWQDETKGSGKV
Sbjct: 241 ATWQDETKGSGKV 252

[Close]

BLAST of Carg23248 vs. ExPASy Swiss-Prot
Match: Q9SYX1 (Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.1 PE=1 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 5.6e-77
Identity = 156/265 (58.87%), Postives = 187/265 (70.57%), Query Frame = 0


Query: 4   MALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPS--SWVAADNGAGISGGSVAVG-- 63
           MALFSPP   SSL     + +  P   FS L S   S  S   A + +G +  + AV   
Sbjct: 1   MALFSPPISSSSL----QNPNFIPKFSFSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVE 60

Query: 64  -----PAVVQKDPE--PVVEKQESLAETNGSVAAVEEVVV--VSKFEDPKWVNGTWDLNQ 123
                  +V++ P+  P V+K+E+    N +V   E      V KF+D +W+NGTWDL Q
Sbjct: 61  APEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWDLKQ 120

Query: 124 FRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEIL 183
           F KDG TDWD+VI AEA+RRKWLE NPE++SN++PVLFDTSI+PWWAWIKRYHLPEAE+L
Sbjct: 121 FEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELL 180

Query: 184 NGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLID 243
           NGRAAM+GFFMAYFVDSLTGVGLV QMGNFFCKTLLF+AV GVL IRKNED++ LK L D
Sbjct: 181 NGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNLFD 240

Query: 244 ETTFYDKQWQATWQ---DETKGSGK 253
           ETT YDKQWQA W+   DE+ GS K
Sbjct: 241 ETTLYDKQWQAAWKNDDDESLGSKK 261

[Close]

BLAST of Carg23248 vs. ExPASy Swiss-Prot
Match: Q6NKS4 (Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.2 PE=1 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 9.3e-72
Identity = 145/251 (57.77%), Postives = 177/251 (70.52%), Query Frame = 0


Query: 3   SMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAV---- 62
           SMALFSPP   S  +P      +   +  +SL S    S ++    +  +G +  V    
Sbjct: 4   SMALFSPPISSSLQNP------NLIPKISTSLLSTKRFSLISVPRASSDNGTTSPVVEIP 63

Query: 63  GPAVVQKDPEPVVEKQE-SLAETNGSV---AAVEEVVVVSKFEDPKWVNGTWDLNQFRKD 122
            PA V  +  PV    E S A  NG+V   A       V K+++ KWVNGTWDL QF KD
Sbjct: 64  KPASVAVEEVPVKSPAESSSASENGAVGGEATDSSTETVIKYQNAKWVNGTWDLKQFEKD 123

Query: 123 GSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRA 182
           G TDWD+VI +EA+RRKWLE+NPE++SN++ V+FDTSI+PWWAW+KRYHLPEAE+LNGRA
Sbjct: 124 GKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRYHLPEAELLNGRA 183

Query: 183 AMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTF 242
           AM+GFFMAYFVDSLTGVGLV QMGNFFCKTLLF+AV GVL IRKNED++ LK L DETT 
Sbjct: 184 AMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDLDKLKDLFDETTL 243

Query: 243 YDKQWQATWQD 246
           YDKQWQA W++
Sbjct: 244 YDKQWQAAWKE 248

[Close]

BLAST of Carg23248 vs. ExPASy TrEMBL
Match: A0A6J1HQ78 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111465096 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.0e-137
Identity = 248/253 (98.02%), Postives = 251/253 (99.21%), Query Frame = 0


Query: 1   MSSMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVGP 60
           MSSMALFSPPSRLSSLSPSSHHR+HFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAV P
Sbjct: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVEP 60

Query: 61  AVVQKDPEPVVEKQESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120
           AVVQKDPEP VEK+ESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD
Sbjct: 61  AVVQKDPEPAVEKKESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120

Query: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180
           AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF
Sbjct: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180

Query: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240
           MAYFVDSLTGVGLVGQMGNFFCKTLLF+AVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ
Sbjct: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240

Query: 241 ATWQDETKGSGKV 254
           ATWQDETKGSGKV
Sbjct: 241 ATWQDETKGSGKV 253

[Close]

BLAST of Carg23248 vs. ExPASy TrEMBL
Match: A0A6J1EC24 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431193 PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 3.8e-137
Identity = 249/253 (98.42%), Postives = 250/253 (98.81%), Query Frame = 0


Query: 1   MSSMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVGP 60
           MSSMALFSPPSRLSSLSPSSHHR+HFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAV  
Sbjct: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVES 60

Query: 61  AVVQKDPEPVVEKQESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120
           AVVQKDPEPVVEKQE LAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD
Sbjct: 61  AVVQKDPEPVVEKQEILAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWD 120

Query: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180
           AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF
Sbjct: 121 AVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFF 180

Query: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240
           MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ
Sbjct: 181 MAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQ 240

Query: 241 ATWQDETKGSGKV 254
           ATWQDETKGSGKV
Sbjct: 241 ATWQDETKGSGKV 253

[Close]

BLAST of Carg23248 vs. ExPASy TrEMBL
Match: A0A5A7TG76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00700 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 3.2e-115
Identity = 224/266 (84.21%), Postives = 234/266 (87.97%), Query Frame = 0


Query: 1   MSSMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSS---------WVAADNGAGI 60
           MSSMALFSP S LS+LSPSSHH +HF  RPFSSLR+RNPSS            ADNGAGI
Sbjct: 1   MSSMALFSPSSHLSTLSPSSHHTTHFSFRPFSSLRTRNPSSSSSSSLFTIRATADNGAGI 60

Query: 61  SGGS--VAVGPAVVQKDPEPVVEKQESLAETNGSVAAVEEVV-VVSKFEDPKWVNGTWDL 120
           SGGS  VAV   V QKDPEP    +ESLA TNGSVAA EEVV VVSKFEDPKWVNGTWDL
Sbjct: 61  SGGSATVAVETPVEQKDPEPA---EESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTWDL 120

Query: 121 NQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAE 180
           NQF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPV+FDTSIVPWWAWIKRYHLPEAE
Sbjct: 121 NQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAE 180

Query: 181 ILNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKL 240
           +LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLF+AVVGVLLIRKNEDIETLKKL
Sbjct: 181 LLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKL 240

Query: 241 IDETTFYDKQWQATWQDET-KGSGKV 254
           IDETTFYDKQWQATWQDET  GSGK+
Sbjct: 241 IDETTFYDKQWQATWQDETSSGSGKI 263

[Close]

BLAST of Carg23248 vs. ExPASy TrEMBL
Match: A0A1S3BLD8 (uncharacterized protein LOC103490842 OS=Cucumis melo OX=3656 GN=LOC103490842 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 5.4e-115
Identity = 224/266 (84.21%), Postives = 234/266 (87.97%), Query Frame = 0


Query: 1   MSSMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSS---------WVAADNGAGI 60
           MSSMALFSP S LS+LSPSSHH +HF  RPFSSLR+RNPSS            ADNGAGI
Sbjct: 1   MSSMALFSPSSHLSTLSPSSHHTTHFSFRPFSSLRTRNPSSSSSSSLFTIRATADNGAGI 60

Query: 61  SGGS--VAVGPAVVQKDPEPVVEKQESLAETNGSVAAVEEVV-VVSKFEDPKWVNGTWDL 120
           SGGS  VAV   V QKDPEP    +ESLA TNGSVAA EEVV VVSKFEDPKWVNGTWDL
Sbjct: 61  SGGSATVAVETPVEQKDPEPA---EESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTWDL 120

Query: 121 NQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAE 180
           NQF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPV+FDTSIVPWWAWIKRYHLPEAE
Sbjct: 121 NQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAE 180

Query: 181 ILNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKL 240
           +LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLF+AVVGVLLIRKNEDIETLKKL
Sbjct: 181 LLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKL 240

Query: 241 IDETTFYDKQWQATWQDET-KGSGKV 254
           IDETTFYDKQWQATWQDET  GSGK+
Sbjct: 241 IDETTFYDKQWQATWQDETSSGSGKM 263

[Close]

BLAST of Carg23248 vs. ExPASy TrEMBL
Match: A0A0A0L5D8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017160 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.2e-114
Identity = 223/267 (83.52%), Postives = 234/267 (87.64%), Query Frame = 0


Query: 1   MSSMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSS--------WVAADNGAGIS 60
           MSSMALFSP S LS+ SP SHH +HF  RPFSSLR+RNPSS           ADNGAGIS
Sbjct: 1   MSSMALFSPSSHLSTFSP-SHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGIS 60

Query: 61  GGS--VAVGPAVVQKDPEP---VVEKQESLAETNGSVAAVEEVV-VVSKFEDPKWVNGTW 120
           GGS  V+V   V QKDPEP     E+QESLA TNGSVAA EEVV VVSKFEDPKWVNGTW
Sbjct: 61  GGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTW 120

Query: 121 DLNQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPE 180
           DLNQF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPV+FDTSIVPWWAWIKRYHLPE
Sbjct: 121 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 180

Query: 181 AEILNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLK 240
           AE+LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLF+AVVGVLLIRKNEDIETLK
Sbjct: 181 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 240

Query: 241 KLIDETTFYDKQWQATWQDETKGSGKV 254
           KLIDETTFYDKQWQATWQDET GSGK+
Sbjct: 241 KLIDETTFYDKQWQATWQDETSGSGKM 266

[Close]

BLAST of Carg23248 vs. TAIR 10
Match: AT4G17600.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 288.9 bits (738), Expect = 4.0e-78
Identity = 156/265 (58.87%), Postives = 187/265 (70.57%), Query Frame = 0


Query: 4   MALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPS--SWVAADNGAGISGGSVAVG-- 63
           MALFSPP   SSL     + +  P   FS L S   S  S   A + +G +  + AV   
Sbjct: 1   MALFSPPISSSSL----QNPNFIPKFSFSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVE 60

Query: 64  -----PAVVQKDPE--PVVEKQESLAETNGSVAAVEEVVV--VSKFEDPKWVNGTWDLNQ 123
                  +V++ P+  P V+K+E+    N +V   E      V KF+D +W+NGTWDL Q
Sbjct: 61  APEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWDLKQ 120

Query: 124 FRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEIL 183
           F KDG TDWD+VI AEA+RRKWLE NPE++SN++PVLFDTSI+PWWAWIKRYHLPEAE+L
Sbjct: 121 FEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELL 180

Query: 184 NGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLID 243
           NGRAAM+GFFMAYFVDSLTGVGLV QMGNFFCKTLLF+AV GVL IRKNED++ LK L D
Sbjct: 181 NGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNLFD 240

Query: 244 ETTFYDKQWQATWQ---DETKGSGK 253
           ETT YDKQWQA W+   DE+ GS K
Sbjct: 241 ETTLYDKQWQAAWKNDDDESLGSKK 261

[Close]

BLAST of Carg23248 vs. TAIR 10
Match: AT5G47110.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 271.6 bits (693), Expect = 6.6e-73
Identity = 145/251 (57.77%), Postives = 177/251 (70.52%), Query Frame = 0


Query: 3   SMALFSPPSRLSSLSPSSHHRSHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAV---- 62
           SMALFSPP   S  +P      +   +  +SL S    S ++    +  +G +  V    
Sbjct: 4   SMALFSPPISSSLQNP------NLIPKISTSLLSTKRFSLISVPRASSDNGTTSPVVEIP 63

Query: 63  GPAVVQKDPEPVVEKQE-SLAETNGSV---AAVEEVVVVSKFEDPKWVNGTWDLNQFRKD 122
            PA V  +  PV    E S A  NG+V   A       V K+++ KWVNGTWDL QF KD
Sbjct: 64  KPASVAVEEVPVKSPAESSSASENGAVGGEATDSSTETVIKYQNAKWVNGTWDLKQFEKD 123

Query: 123 GSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRA 182
           G TDWD+VI +EA+RRKWLE+NPE++SN++ V+FDTSI+PWWAW+KRYHLPEAE+LNGRA
Sbjct: 124 GKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRYHLPEAELLNGRA 183

Query: 183 AMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLIDETTF 242
           AM+GFFMAYFVDSLTGVGLV QMGNFFCKTLLF+AV GVL IRKNED++ LK L DETT 
Sbjct: 184 AMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDLDKLKDLFDETTL 243

Query: 243 YDKQWQATWQD 246
           YDKQWQA W++
Sbjct: 244 YDKQWQAAWKE 248

The following BLAST results are available for this feature:

BLAST of Carg23248 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015695.1	1.0e-139	100.00	Light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita argy...	[more]
KAG6577656.1	4.2e-138	99.21	Light-harvesting complex-like protein 3 isotype 1, chloroplastic, partial [Cucur...	[more]
XP_022965154.1	2.1e-137	98.02	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxi...	[more]
XP_022923520.1	7.9e-137	98.42	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita mosc...	[more]
XP_023552068.1	2.0e-135	97.23	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo...	[more]

BLAST of Carg23248 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYX1	5.6e-77	58.87	Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis ...	[more]
Q6NKS4	9.3e-72	57.77	Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis ...	[more]

BLAST of Carg23248 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQ78	1.0e-137	98.02	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita ma...	[more]
A0A6J1EC24	3.8e-137	98.42	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita mo...	[more]
A0A5A7TG76	3.2e-115	84.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BLD8	5.4e-115	84.21	uncharacterized protein LOC103490842 OS=Cucumis melo OX=3656 GN=LOC103490842 PE=...	[more]
A0A0A0L5D8	1.2e-114	83.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017160 PE=4 SV=1	[more]

BLAST of Carg23248 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17600.1	4.0e-78	58.87	Chlorophyll A-B binding family protein	[more]
AT5G47110.1	6.6e-73	57.77	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 57..206 e-value: 4.2E-5 score: 25.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR14154:SF87	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN 3 ISOTYPE 1, CHLOROPLASTIC-RELATED	coord: 56..251
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 56..251
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 105..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23248-RA	Carg23248-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding