Carg23041 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23041
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cysteine-rich and transmembrane domain-containing protein WIH2-like
Location	Carg_Chr11: 9201585 .. 9203779 (-)
RNA-Seq Expression	Carg23041
Synteny	Carg23041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTTTGAAGGAGGGAATATGAAAAATTCAAACTCGAAAAGAAATAAAAAAGAAAATAAAATTCCGGACGCAAAGTAATTCTTTATTCAAATAGTTTTCATAGTTATAGCTCTCTGGTTTCTCTGTTTGGCTACTAATAAAATCCATCCGATCGCGCAAGAAATCTCCGAGAGAAAGTAGTGGAAGAAAATGAGTTACTACAACCAGCCTCCGCCTCCCGTCGGCGTTCCTCCGCCGCAAGGTAACATCTAAACCAATGCTCTTAGTTCTGATGCATTTTCTTGAATTCCTAAGGTTCAAATCGAACGGATCGTGCTGTGTATGAGTAAAAAACGATTTACTCTTTGTTTTCGTCTCGCTTTCGTGCTTCGATTTGACCGATTTCCGGATTTGATCCTGTGAATGTCGATGATTTTAGGTTATCCGCCGGAAGGTTATCCGAAGGACGCTTATCCGCCTCCAGGACATCCGCCGCCGGCTGGTTATCCTCCTGCTGGTTATCCACAGGCAGGATATCCGCCTCCGGCTTATGGACCGGCGTACGGTCAACCTCCGCCTCAATATCAACAACAACGGCAAGAAGTTGGATTCCTCGAAGGCTGGTCAAGTATTTGCGTCTATTTAATTTTGATCTTCCTTGATGCGATTTAAACTGCGTTTTTCGAATTGAAATTGAGGCGATGCGTCGAAGATTGTTAGTTTAGGAAATAGTGTTTGCGTTGGCTGTTAGTGTTAGTGGATTGATTGCTGTTTTGGTGTTGAGGAATTTGGAAACCGTCGAGTCGTAAAAACTGACACAGGTTGGAAAGATATTGCTCACATGAACAGAGGCGCAGATTTCGGTGATTTGTCGAACCCTTTTTCGTTTCGGTGGAACAAAAAGTGCTTTTCGTTTTCTTTCCTTTTTCAAACAAAAAAATGCGTTCCAGAAGGGTCTTTTTGTCATTTTTTAAAATTTGAATTTGTTTAATATTTATTTAAACCTCAATTTTTTGAAATAAAATTTTTTTATACAAAATTAAAATTAATTTCGGTCCATTTTTTCGGAGTAAGTCGAATTAGATTCGAGCAATATTATAGTTAAACTTAGAGATGTCCACTAGACATCTGCCTCTCACCATTGTCTCCGCTTACTATTTTAATTCTCTTCCGATAAATTTCTCGATTTATTTTTGAAGGAATCTGACAATAGAATGTTTTGAAAATTTGTGTGGATTGAGTTCTTGCAAGAAAAGTTTCTATATATTGTGATGGTCCCACATTAGCTGAGGAGGAGAACAAACCACCATTCATAAGGGTACGAAAACTTTCCCCTATTAGACGCGTTTTAAAGCCTCGAGGGGAAGTCCGAAAGGAAAAGCCCAACTAGGACAATATCTGCTAGAGGTGAATCTGAGCCGTTACAAATGGTATCAGAGTTAGGTTCCGGACGATGTGCTAGCCTTTTCGCTGTTCCTTGAAAGGCGATAGACACGAGGTAGTGTGCCAGTAAGGACGCTGGCCCCAAAGGGGGTGGATTTGGGGCGGTCCCACATCGATTGAAGGAAGGAAAGAGTGCCAGCGAGGACGCTGGGCACCAAAGGGGGGTGGATTGTGACGTCCCACATTGGTTGAGGAGGAGAACAAACCACCATTTATAAGGGTGTGAAAACCTTTCTCAAGGACGCTGAGCCCCAAAAAGGGTGGATTGTGACATCCCACATTAGTTGGGAAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCTCCTAATAGACGCGTTTTAAAGATAAGTCTGAAATCTATTTCTATCCCTTCTCACGTTTATAGTTTAAATAAAGATTTGAACTCGGAGCCGAACTTATTAAATGTAGCTCTCTAATTTGGGTTGAATGATTTATTAAGATTCCATTTGATTGAGGTGATTCAAATAAAAAATTGGAATATGGAATATATATATAAGAGAAGTGTAGTTTAGAAGTAAATAAAAGTTTGTTTGTGAAATTGACAGTGTGGCTGCTCTTTGCTGTTGCTTCGTGTTGGATGCTTGCTTTTAAGGACAGAAGCAGGAAGCTTTTTGTGAGTGAGTGAGTGATCATATGGTGTATGAAATTTTAATTTAATATCCAATGTTGCAATGGCTTTATCTCCATCTTTATATTCTTATTTATGCCAACTCTATTTCTCTTCATATTTCTTGAACCTTGCTC

mRNA sequence

AAGTTTGAAGGAGGGAATATGAAAAATTCAAACTCGAAAAGAAATAAAAAAGAAAATAAAATTCCGGACGCAAAGTAATTCTTTATTCAAATAGTTTTCATAGTTATAGCTCTCTGGTTTCTCTGTTTGGCTACTAATAAAATCCATCCGATCGCGCAAGAAATCTCCGAGAGAAAGTAGTGGAAGAAAATGAGTTACTACAACCAGCCTCCGCCTCCCGTCGGCGTTCCTCCGCCGCAAGGTTATCCGCCGGAAGGTTATCCGAAGGACGCTTATCCGCCTCCAGGACATCCGCCGCCGGCTGGTTATCCTCCTGCTGGTTATCCACAGGCAGGATATCCGCCTCCGGCTTATGGACCGGCGTACGGTCAACCTCCGCCTCAATATCAACAACAACGGCAAGAAGTTGGATTCCTCGAAGGCTGTGTGGCTGCTCTTTGCTGTTGCTTCGTGTTGGATGCTTGCTTTTAAGGACAGAAGCAGGAAGCTTTTTGTGAGTGAGTGAGTGATCATATGGTGTATGAAATTTTAATTTAATATCCAATGTTGCAATGGCTTTATCTCCATCTTTATATTCTTATTTATGCCAACTCTATTTCTCTTCATATTTCTTGAACCTTGCTC

Coding sequence (CDS)

ATGAGTTACTACAACCAGCCTCCGCCTCCCGTCGGCGTTCCTCCGCCGCAAGGTTATCCGCCGGAAGGTTATCCGAAGGACGCTTATCCGCCTCCAGGACATCCGCCGCCGGCTGGTTATCCTCCTGCTGGTTATCCACAGGCAGGATATCCGCCTCCGGCTTATGGACCGGCGTACGGTCAACCTCCGCCTCAATATCAACAACAACGGCAAGAAGTTGGATTCCTCGAAGGCTGTGTGGCTGCTCTTTGCTGTTGCTTCGTGTTGGATGCTTGCTTTTAA

Protein sequence

MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYGQPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF

Homology

[Close]

BLAST of Carg23041 vs. NCBI nr
Match: XP_022927665.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita moschata] >XP_022989028.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita maxima] >KAG6588716.1 hypothetical protein SDJN03_17281, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022504.1 hypothetical protein SDJN02_16236 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.7 bits (491), Expect = 6.9e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYG 60
          MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYG
Sbjct: 1  MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYG 60

Query: 61 QPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 94
          QPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF
Sbjct: 61 QPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 93

[Close]

BLAST of Carg23041 vs. NCBI nr
Match: XP_023529875.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.2 bits (487), Expect = 2.0e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYG 60
          MSY+NQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYG
Sbjct: 1  MSYFNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYG 60

Query: 61 QPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 94
          QPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF
Sbjct: 61 QPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 93

[Close]

BLAST of Carg23041 vs. NCBI nr
Match: XP_022148715.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Momordica charantia])

HSP 1 Score: 170.2 bits (430), Expect = 8.2e-39
Identity = 82/93 (88.17%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYG 60
          MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPG+PP AGYPP GYP  GYPPPAYGPAYG
Sbjct: 1  MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGYPPQAGYPPPGYPPQGYPPPAYGPAYG 60

Query: 61 QPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 94
          QPPPQ QQQ+Q VGFLEGC+AALCCC +LDACF
Sbjct: 61 QPPPQQQQQQQSVGFLEGCLAALCCCCLLDACF 93

[Close]

BLAST of Carg23041 vs. NCBI nr
Match: XP_023553865.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.1 bits (401), Expect = 1.9e-35
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MSYYNQPPPPVGVPPPQGYPPEGY-PKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAY 60
          MSYYNQPPPPVGVPPPQGYPP+GY PKDAYPPPG+PP  GYPPAGYP  GYPPPAYGPAY
Sbjct: 1  MSYYNQPPPPVGVPPPQGYPPQGYPPKDAYPPPGYPPQGGYPPAGYPPQGYPPPAYGPAY 60

Query: 61 GQPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 94
          G P PQ+  Q++EVGF+EGC+AALCCCFVLD CF
Sbjct: 61 GPPQPQHSNQKKEVGFVEGCLAALCCCFVLDVCF 94

[Close]

BLAST of Carg23041 vs. NCBI nr
Match: XP_022952198.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita moschata])

HSP 1 Score: 156.0 bits (393), Expect = 1.6e-34
Identity = 76/94 (80.85%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MSYYNQPPPPVGVPPPQGYPPEGY-PKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAY 60
          MSYYNQPPPPVGVPPPQGYPP+GY PKDAYPP G+PP  GYPPAGYP  GYPPPAYGPAY
Sbjct: 1  MSYYNQPPPPVGVPPPQGYPPQGYPPKDAYPPQGYPPQGGYPPAGYPPQGYPPPAYGPAY 60

Query: 61 GQPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 94
          G P PQ+  Q++EVGF+EGC+AALCCCFVLD CF
Sbjct: 61 GPPQPQHSNQKKEVGFVEGCLAALCCCFVLDVCF 94

[Close]

BLAST of Carg23041 vs. ExPASy Swiss-Prot
Match: Q8S8M0 (Cysteine-rich and transmembrane domain-containing protein WIH2 OS=Arabidopsis thaliana OX=3702 GN=WIH2 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-28
Identity = 71/101 (70.30%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1  MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPA----GYPPAGYPQAGYP----P 60
          MS YNQ  PPVGVPPPQGYPPEGYPKDAYPP G+PP      GYPP GYPQ GYP    P
Sbjct: 1  MSQYNQ--PPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PAYGPAYGQPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 94
          P Y P Y  PPPQ+QQQ+   GFLEGC+AALCCC +LDACF
Sbjct: 61 PPYAPQY-PPPPQHQQQQSSPGFLEGCLAALCCCCLLDACF 98

[Close]

BLAST of Carg23041 vs. ExPASy Swiss-Prot
Match: Q8LCL8 (Cysteine-rich and transmembrane domain-containing protein B OS=Arabidopsis thaliana OX=3702 GN=At3g57160 PE=3 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-19
Identity = 59/100 (59.00%), Postives = 63/100 (63.00%), Query Frame = 0


Query: 5   NQPPPPVGVPPPQGYPPEGYPKDAYPPP-------GHPPPAGYPPAGYPQAGYPPPAYG- 64
           +Q PP VGVPP   YP EG PKDAYPPP       G+PPP GYP  GYP  GYPP  Y  
Sbjct: 2   SQQPPAVGVPPSHAYPAEGPPKDAYPPPGQPYPQQGYPPPQGYPQQGYPPQGYPPQGYPE 61

Query: 65  ---PAYGQPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 94
              P  G PP Q QQQ+   G LEGC+AALCC  VLDACF
Sbjct: 62  QGYPQQGYPPQQQQQQKHSPGMLEGCIAALCCYCVLDACF 101

[Close]

BLAST of Carg23041 vs. ExPASy Swiss-Prot
Match: Q9FJW3 (Cysteine-rich and transmembrane domain-containing protein WIH1 OS=Arabidopsis thaliana OX=3702 GN=WIH1 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-18
Identity = 58/93 (62.37%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 4  YNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYGQPP 63
          Y+Q   PVG PPPQGYP    PKD YPP G+ PPAGYPP GY Q GY      PA G PP
Sbjct: 2  YHQEQHPVGAPPPQGYP----PKDGYPPAGY-PPAGYPPPGYAQ-GY------PAQGYPP 61

Query: 64 PQYQ---QQRQEVGFLEGCVAALCCCFVLDACF 94
          PQY    QQ+Q  G LEGC+AALCCC +LDACF
Sbjct: 62 PQYSQAPQQKQNAGMLEGCLAALCCCCLLDACF 82

[Close]

BLAST of Carg23041 vs. ExPASy Swiss-Prot
Match: Q17094 (Rhodopsin (Fragment) OS=Alloteuthis subulata OX=54069 GN=RHO PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.5e-07
Identity = 33/51 (64.71%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 15  PPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYGQPPPQ 66
           PPQGYPP+GYP    PPP   PP GYPP GYP  GYPPP  GP    PPPQ
Sbjct: 384 PPQGYPPQGYPP---PPPQGYPPQGYPPQGYPPQGYPPPPQGPPPQGPPPQ 431

[Close]

BLAST of Carg23041 vs. ExPASy Swiss-Prot
Match: P24603 (Rhodopsin OS=Loligo forbesii OX=6618 GN=RHO PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.5e-07
Identity = 33/51 (64.71%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 15  PPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYGQPPPQ 66
           PPQGYPP+GYP    PPP   PP GYPP GYP  GYPPP  GP    PPPQ
Sbjct: 391 PPQGYPPQGYPP---PPPQGYPPQGYPPQGYPPQGYPPPPQGPPPQGPPPQ 438

[Close]

BLAST of Carg23041 vs. ExPASy TrEMBL
Match: A0A6J1JP18 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita maxima OX=3661 GN=LOC111486213 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.3e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYG 60
          MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYG
Sbjct: 1  MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYG 60

Query: 61 QPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 94
          QPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF
Sbjct: 61 QPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 93

[Close]

BLAST of Carg23041 vs. ExPASy TrEMBL
Match: A0A6J1EPM1 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita moschata OX=3662 GN=LOC111434485 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.3e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYG 60
          MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYG
Sbjct: 1  MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYG 60

Query: 61 QPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 94
          QPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF
Sbjct: 61 QPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 93

[Close]

BLAST of Carg23041 vs. ExPASy TrEMBL
Match: A0A6J1D3P4 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Momordica charantia OX=3673 GN=LOC111017311 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.9e-39
Identity = 82/93 (88.17%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYG 60
          MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPG+PP AGYPP GYP  GYPPPAYGPAYG
Sbjct: 1  MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGYPPQAGYPPPGYPPQGYPPPAYGPAYG 60

Query: 61 QPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 94
          QPPPQ QQQ+Q VGFLEGC+AALCCC +LDACF
Sbjct: 61 QPPPQQQQQQQSVGFLEGCLAALCCCCLLDACF 93

[Close]

BLAST of Carg23041 vs. ExPASy TrEMBL
Match: A0A6J1GJV9 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita moschata OX=3662 GN=LOC111454944 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.7e-35
Identity = 76/94 (80.85%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MSYYNQPPPPVGVPPPQGYPPEGY-PKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAY 60
          MSYYNQPPPPVGVPPPQGYPP+GY PKDAYPP G+PP  GYPPAGYP  GYPPPAYGPAY
Sbjct: 1  MSYYNQPPPPVGVPPPQGYPPQGYPPKDAYPPQGYPPQGGYPPAGYPPQGYPPPAYGPAY 60

Query: 61 GQPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 94
          G P PQ+  Q++EVGF+EGC+AALCCCFVLD CF
Sbjct: 61 GPPQPQHSNQKKEVGFVEGCLAALCCCFVLDVCF 94

[Close]

BLAST of Carg23041 vs. ExPASy TrEMBL
Match: A0A6J1I9Y5 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita maxima OX=3661 GN=LOC111470998 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.6e-32
Identity = 74/94 (78.72%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSYYNQPPPPVGVPPPQGYPPEGY-PKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAY 60
          MSYYNQPPPPVGVPPPQGYPP+GY PKDAYPPPG+PP  GYPPAGYP  GYPPPAYGP  
Sbjct: 1  MSYYNQPPPPVGVPPPQGYPPQGYPPKDAYPPPGYPPQGGYPPAGYPPQGYPPPAYGP-- 60

Query: 61 GQPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 94
            P PQ+  Q++EVGF+EGC+AALCCCFVLD CF
Sbjct: 61 --PQPQHPNQKKEVGFVEGCLAALCCCFVLDVCF 90

[Close]

BLAST of Carg23041 vs. TAIR 10
Match: AT2G41420.1 (proline-rich family protein )

HSP 1 Score: 126.3 bits (316), Expect = 1.3e-29
Identity = 71/101 (70.30%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1  MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPA----GYPPAGYPQAGYP----P 60
          MS YNQ  PPVGVPPPQGYPPEGYPKDAYPP G+PP      GYPP GYPQ GYP    P
Sbjct: 1  MSQYNQ--PPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PAYGPAYGQPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF 94
          P Y P Y  PPPQ+QQQ+   GFLEGC+AALCCC +LDACF
Sbjct: 61 PPYAPQY-PPPPQHQQQQSSPGFLEGCLAALCCCCLLDACF 98

[Close]

BLAST of Carg23041 vs. TAIR 10
Match: AT5G67600.1 (unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49845.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-19
Identity = 58/93 (62.37%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 4  YNQPPPPVGVPPPQGYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYGQPP 63
          Y+Q   PVG PPPQGYP    PKD YPP G+ PPAGYPP GY Q GY      PA G PP
Sbjct: 2  YHQEQHPVGAPPPQGYP----PKDGYPPAGY-PPAGYPPPGYAQ-GY------PAQGYPP 61

Query: 64 PQYQ---QQRQEVGFLEGCVAALCCCFVLDACF 94
          PQY    QQ+Q  G LEGC+AALCCC +LDACF
Sbjct: 62 PQYSQAPQQKQNAGMLEGCLAALCCCCLLDACF 82

[Close]

BLAST of Carg23041 vs. TAIR 10
Match: AT3G49845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 88.6 bits (218), Expect = 2.9e-18
Identity = 58/122 (47.54%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 4   YNQPPPPVGVPPPQGYPP-EGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYG-----P 63
           Y  P  PV  PPPQGYPP EGYP   YPPP   PP  YP AGYP AGYPPP  G     P
Sbjct: 3   YQDPQHPVSAPPPQGYPPKEGYPPAGYPPPAGYPPPQYPQAGYPPAGYPPPQQGYGQGYP 62

Query: 64  AYGQPPPQYQQ--------------------------QRQEVGFLEGCVAALCCCFVLDA 94
           A G PPPQY Q                          ++   GF+EGC+A LCCC +L+A
Sbjct: 63  AQGYPPPQYPQGHPPQYPYQGPPPPHYGQAPPKNKKDKKDSGGFMEGCLAMLCCCVLLEA 122

[Close]

BLAST of Carg23041 vs. TAIR 10
Match: AT5G45350.1 (proline-rich family protein )

HSP 1 Score: 54.7 bits (130), Expect = 4.7e-08
Identity = 39/65 (60.00%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 9  PPVGVPPPQGYPPEGYPKDAY-PPPGHPPPAGYPPAGYPQA--GYPP-PAYG-----PAY 65
          PP G PPP  YPP GYP+  Y PPPG  PPAGYPP  YP A  GYPP P YG     P Y
Sbjct: 17 PPAGYPPPGAYPPAGYPQQGYPPPPGAYPPAGYPPGAYPPAPGGYPPAPGYGGYPPAPGY 76

[Close]

BLAST of Carg23041 vs. TAIR 10
Match: AT5G45350.2 (proline-rich family protein )

HSP 1 Score: 54.7 bits (130), Expect = 4.7e-08
Identity = 39/65 (60.00%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 9  PPVGVPPPQGYPPEGYPKDAY-PPPGHPPPAGYPPAGYPQA--GYPP-PAYG-----PAY 65
          PP G PPP  YPP GYP+  Y PPPG  PPAGYPP  YP A  GYPP P YG     P Y
Sbjct: 17 PPAGYPPPGAYPPAGYPQQGYPPPPGAYPPAGYPPGAYPPAPGGYPPAPGYGGYPPAPGY 76

The following BLAST results are available for this feature:

BLAST of Carg23041 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927665.1	6.9e-46	100.00	cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita m...	[more]
XP_023529875.1	2.0e-45	98.92	cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita p...	[more]
XP_022148715.1	8.2e-39	88.17	cysteine-rich and transmembrane domain-containing protein WIH2-like [Momordica c...	[more]
XP_023553865.1	1.9e-35	81.91	cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita p...	[more]
XP_022952198.1	1.6e-34	80.85	cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita m...	[more]

BLAST of Carg23041 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8M0	1.8e-28	70.30	Cysteine-rich and transmembrane domain-containing protein WIH2 OS=Arabidopsis th...	[more]
Q8LCL8	1.2e-19	59.00	Cysteine-rich and transmembrane domain-containing protein B OS=Arabidopsis thali...	[more]
Q9FJW3	3.7e-18	62.37	Cysteine-rich and transmembrane domain-containing protein WIH1 OS=Arabidopsis th...	[more]
Q17094	6.5e-07	64.71	Rhodopsin (Fragment) OS=Alloteuthis subulata OX=54069 GN=RHO PE=3 SV=1	[more]
P24603	6.5e-07	64.71	Rhodopsin OS=Loligo forbesii OX=6618 GN=RHO PE=2 SV=1	[more]

BLAST of Carg23041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JP18	3.3e-46	100.00	cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita...	[more]
A0A6J1EPM1	3.3e-46	100.00	cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita...	[more]
A0A6J1D3P4	3.9e-39	88.17	cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Momordica...	[more]
A0A6J1GJV9	7.7e-35	80.85	cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita...	[more]
A0A6J1I9Y5	3.6e-32	78.72	cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita...	[more]

BLAST of Carg23041 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41420.1	1.3e-29	70.30	proline-rich family protein	[more]
AT5G67600.1	2.6e-19	62.37	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures;...	[more]
AT3G49845.1	2.9e-18	47.54	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G45350.1	4.7e-08	60.00	proline-rich family protein	[more]
AT5G45350.2	4.7e-08	60.00	proline-rich family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028144	Cysteine-rich transmembrane CYSTM domain	PFAM	PF12734	CYSTM	coord: 41..93 e-value: 8.6E-7 score: 29.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..60
None	No IPR available	PANTHER	PTHR31568:SF88	CYSTEINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN A-LIKE	coord: 1..93
IPR044850	Cysteine-rich and transmembrane domain-containing protein WIH1/2-like	PANTHER	PTHR31568	RCG49325, ISOFORM CRA_A	coord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23041-RA	Carg23041-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane