Carg22983 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22983
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Peroxidase
Location	Carg_Chr02: 2001389 .. 2001724 (+)
RNA-Seq Expression	Carg22983
Synteny	Carg22983

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATTGCCACAGCTGAGATGATGCCCCGACAAGCTGCCTCGAGCCATGTTGGTGCCGATGGGCCATTCGGCCCCGTCATTGCTGTCCTTGTAGTCATGGTGATTCTCGGCACCGTAGCCGGGATGATCGGGAGGCTTTTCTCAGGTCGTCGTCTAGTTGGTGGTGGTCAGTATGACGTTGAAGGATGGGTTGAGAAGAAATGCTCATCTTGTTTCGATGGCAAGGTTGACGACGTTCCACCGTCGGGGCCTCCACGGTCGGCCACGGCGGGAGGCGATGTTCCTATGGCAATGCCAATTCTTCCGGAGATAAAAGAAGAACAAGGGCATTGA

mRNA sequence

ATGTCCATTGCCACAGCTGAGATGATGCCCCGACAAGCTGCCTCGAGCCATGTTGGTGCCGATGGGCCATTCGGCCCCGTCATTGCTGTCCTTGTAGTCATGGTGATTCTCGGCACCGTAGCCGGGATGATCGGGAGGCTTTTCTCAGGTCGTCGTCTAGTTGGTGGTGGTCAGTATGACGTTGAAGGATGGGTTGAGAAGAAATGCTCATCTTGTTTCGATGGCAAGGTTGACGACGTTCCACCGTCGGGGCCTCCACGGTCGGCCACGGCGGGAGGCGATGTTCCTATGGCAATGCCAATTCTTCCGGAGATAAAAGAAGAACAAGGGCATTGA

Coding sequence (CDS)

ATGTCCATTGCCACAGCTGAGATGATGCCCCGACAAGCTGCCTCGAGCCATGTTGGTGCCGATGGGCCATTCGGCCCCGTCATTGCTGTCCTTGTAGTCATGGTGATTCTCGGCACCGTAGCCGGGATGATCGGGAGGCTTTTCTCAGGTCGTCGTCTAGTTGGTGGTGGTCAGTATGACGTTGAAGGATGGGTTGAGAAGAAATGCTCATCTTGTTTCGATGGCAAGGTTGACGACGTTCCACCGTCGGGGCCTCCACGGTCGGCCACGGCGGGAGGCGATGTTCCTATGGCAATGCCAATTCTTCCGGAGATAAAAGAAGAACAAGGGCATTGA

Protein sequence

MSIATAEMMPRQAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKKCSSCFDGKVDDVPPSGPPRSATAGGDVPMAMPILPEIKEEQGH

Homology

[Close]

BLAST of Carg22983 vs. NCBI nr
Match: KAG7035125.1 (hypothetical protein SDJN02_01920, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.8 bits (569), Expect = 7.4e-55
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MSIATAEMMPRQAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYD 60
           MSIATAEMMPRQAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYD
Sbjct: 1   MSIATAEMMPRQAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYD 60

Query: 61  VEGWVEKKCSSCFDGKVDDVPPSGPPRSATAGGDVPMAMPILPEIKEEQGH 112
           VEGWVEKKCSSCFDGKVDDVPPSGPPRSATAGGDVPMAMPILPEIKEEQGH
Sbjct: 61  VEGWVEKKCSSCFDGKVDDVPPSGPPRSATAGGDVPMAMPILPEIKEEQGH 111

[Close]

BLAST of Carg22983 vs. NCBI nr
Match: XP_023533131.1 (uncharacterized protein LOC111795113 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.3 bits (521), Expect = 2.7e-49
Identity = 102/111 (91.89%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 1   MSIATAEMMPRQAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYD 60
           MSIATAE MPRQAASSHVGAD PFGPVIAVLVV+VILGTVAG+IGRLFSGRR+VGGGQYD
Sbjct: 1   MSIATAETMPRQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYD 60

Query: 61  VEGWVEKKCSSCFDGKVDDVPPSGPPRSATAGGDVPMAMPILPEIKEEQGH 112
           VEGWVEKKCSSC DGKVDDVPPS PPRSAT GGDVP+AMPILPEIKEEQGH
Sbjct: 61  VEGWVEKKCSSCLDGKVDDVPPSRPPRSATVGGDVPVAMPILPEIKEEQGH 111

[Close]

BLAST of Carg22983 vs. NCBI nr
Match: KAG6605124.1 (hypothetical protein SDJN03_02441, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.5 bits (288), Expect = 2.8e-22
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MSIATAEMMPRQAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYD 60
          MSIATAEMMP QAASSHVGADGPFGPVIA+LVVMVILGTVAGMIGRLFSGRR+VGGGQYD
Sbjct: 1  MSIATAEMMPGQAASSHVGADGPFGPVIAILVVMVILGTVAGMIGRLFSGRRVVGGGQYD 60

Query: 61 VE 63
          VE
Sbjct: 61 VE 62

[Close]

BLAST of Carg22983 vs. NCBI nr
Match: XP_015874226.1 (transcription factor RBF1-like [Ziziphus jujuba])

HSP 1 Score: 115.5 bits (288), Expect = 2.8e-22
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 9   MPRQAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKK 68
           M +QA ++H G  G  GPVIAVL V+ ILG +AGMIGRL SGR ++G GQYD E WVE+K
Sbjct: 15  MTQQAYTTHSG-HGSVGPVIAVLAVITILGVIAGMIGRLCSGRPIMGHGQYDFEAWVERK 74

Query: 69  CSSCFDGKVDDVPPSGPPRSATAGGDVPMAMP--ILPEIKEEQ 110
           CS+C DG+VD  PP   P + T+GG+VP+AMP  I  EIKEE+
Sbjct: 75  CSTCLDGRVDPPPPPPRPPANTSGGEVPVAMPVEIQQEIKEEE 116

[Close]

BLAST of Carg22983 vs. NCBI nr
Match: KAF3435358.1 (hypothetical protein FNV43_RR22447 [Rhamnella rubrinervis])

HSP 1 Score: 108.2 bits (269), Expect = 4.5e-20
Identity = 58/100 (58.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 12  QAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKKCSS 71
           QA ++H G  G  GPVI VL V+ ILG +AGMIGRL SGR ++G GQYD EGWVEKKCS+
Sbjct: 18  QAYTTHSG-HGSVGPVIGVLAVITILGVIAGMIGRLCSGRPIMGHGQYDFEGWVEKKCST 77

Query: 72  CFDGKVDDVPPSGPPRSATAGGDVPMAMPI--LPEIKEEQ 110
           C DG+VD  PP   P    +G +VP+AMP+    EIKEE+
Sbjct: 78  CLDGRVDYPPPRPQPPPTFSGEEVPVAMPVETPQEIKEEE 116

[Close]

BLAST of Carg22983 vs. ExPASy TrEMBL
Match: A0A6P3Z8L2 (transcription factor RBF1-like OS=Ziziphus jujuba OX=326968 GN=LOC107411194 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 9   MPRQAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKK 68
           M +QA ++H G  G  GPVIAVL V+ ILG +AGMIGRL SGR ++G GQYD E WVE+K
Sbjct: 15  MTQQAYTTHSG-HGSVGPVIAVLAVITILGVIAGMIGRLCSGRPIMGHGQYDFEAWVERK 74

Query: 69  CSSCFDGKVDDVPPSGPPRSATAGGDVPMAMP--ILPEIKEEQ 110
           CS+C DG+VD  PP   P + T+GG+VP+AMP  I  EIKEE+
Sbjct: 75  CSTCLDGRVDPPPPPPRPPANTSGGEVPVAMPVEIQQEIKEEE 116

[Close]

BLAST of Carg22983 vs. ExPASy TrEMBL
Match: A0A5B7BYN3 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_043216 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.9e-19
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 12  QAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKKCSS 71
           QA ++H G  G  GPVIAVL V+ ILG +AGMIGRL SGRR++G GQYD EGWVE+KCSS
Sbjct: 21  QAYTTHSG-HGSIGPVIAVLAVITILGVIAGMIGRLCSGRRIMGHGQYDFEGWVERKCSS 80

Query: 72  CFDGKVDDVPPSGPPRSAT-------AGGD-VPMAMPI-LPEIKEEQ 110
           C DG+VD   P  PPR+A        +GGD VP+A+P+  P+ ++E+
Sbjct: 81  CLDGRVD---PPPPPRAAAENTTDNESGGDAVPVAVPVETPQERKEE 123

[Close]

BLAST of Carg22983 vs. ExPASy TrEMBL
Match: A0A2K2AUP1 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G144400 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 58/103 (56.31%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 11  RQAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKKCS 70
           +QAA +H G  G  GPVIAVL V+ ILG +AGMIGRL SGRR++G GQYD EGWVE+KCS
Sbjct: 22  QQAAYTHTG-HGSVGPVIAVLAVITILGVIAGMIGRLCSGRRILGHGQYDFEGWVERKCS 81

Query: 71  SCFDGKVDDVPPSGPPRSATAGGDVPMAMPIL----PEIKEEQ 110
           SC DG VD  P        T   D+P+A P++     EIKEE+
Sbjct: 82  SCLDGHVDPPP--------TRHADIPVAAPVVEEGPQEIKEEE 115

[Close]

BLAST of Carg22983 vs. ExPASy TrEMBL
Match: A0A438EPZ7 (Peroxidase OS=Vitis vinifera OX=29760 GN=PER10_3 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.4e-19
Identity = 61/107 (57.01%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 9   MPRQAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKK 68
           + +QA ++H G  G  GPVIAVL V+ ILG +AGMIGRL SGRR++G GQYDVEGWVE+K
Sbjct: 476 LTQQAYTAHSG-HGSVGPVIAVLAVITILGVIAGMIGRLCSGRRIMGRGQYDVEGWVERK 535

Query: 69  CSSCFDGKVDDVP-PSGPPRSATAGGDVPMA--MPILPEIK-EEQGH 112
           CSSC DG+VD  P P   P S + G   P A       EIK EEQ H
Sbjct: 536 CSSCIDGRVDPPPRPPPAPTSYSPGESAPPADSSETAQEIKQEEQSH 581

[Close]

BLAST of Carg22983 vs. ExPASy TrEMBL
Match: A0A438FN09 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_020626 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.4e-19
Identity = 61/107 (57.01%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 9   MPRQAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKK 68
           + +QA ++H G  G  GPVIAVL V+ ILG +AGMIGRL SGRR++G GQYDVEGWVE+K
Sbjct: 18  LTQQAYTAHSG-HGSVGPVIAVLAVITILGVIAGMIGRLCSGRRIMGHGQYDVEGWVERK 77

Query: 69  CSSCFDGKVDDVP-PSGPPRSATAGGDVPMA--MPILPEIK-EEQGH 112
           CSSC DG+VD  P P   P S + G   P A       EIK EEQ H
Sbjct: 78  CSSCIDGRVDPPPRPPPAPTSYSPGESAPPADSSETAQEIKQEEQSH 123

[Close]

BLAST of Carg22983 vs. TAIR 10
Match: AT3G57500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 9.2e-11
Identity = 35/86 (40.70%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 10  PRQAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYDVEGWVEKKC 69
           P Q   SH         ++ VL V+ IL  +AG+  RL  GR L  GG +D+EGWVE+KC
Sbjct: 24  PSQDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHLSHGGDHDIEGWVERKC 83

Query: 70  SSCFDGKVDDV------PPSGPPRSA 90
            SC D  +  V      PP  PP +A
Sbjct: 84  RSCIDAGIPAVSAAPSPPPPPPPATA 109

[Close]

BLAST of Carg22983 vs. TAIR 10
Match: AT2G26520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 6  AEMMPRQAASSHVGADGPFGPVIAVLVVMVILGTVAGMIGRLFSGRRLVGGGQYDVEGWV 65
          A  + + ++S     +   GP IAV +V+ +L  +A +IGRL SG+ ++G G YD+E W 
Sbjct: 13 ATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILGYGDYDMERWA 72

Query: 66 EKKCSSCFDGKVDDVPPSGPP 87
          E +C SC DG +    PS  P
Sbjct: 73 ESRCGSCIDGHIHPHRPSPSP 93

The following BLAST results are available for this feature:

BLAST of Carg22983 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035125.1	7.4e-55	100.00	hypothetical protein SDJN02_01920, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023533131.1	2.7e-49	91.89	uncharacterized protein LOC111795113 [Cucurbita pepo subsp. pepo]	[more]
KAG6605124.1	2.8e-22	95.16	hypothetical protein SDJN03_02441, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_015874226.1	2.8e-22	59.22	transcription factor RBF1-like [Ziziphus jujuba]	[more]
KAF3435358.1	4.5e-20	58.00	hypothetical protein FNV43_RR22447 [Rhamnella rubrinervis]	[more]

BLAST of Carg22983 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22983 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P3Z8L2	1.4e-22	59.22	transcription factor RBF1-like OS=Ziziphus jujuba OX=326968 GN=LOC107411194 PE=4...	[more]
A0A5B7BYN3	1.9e-19	56.07	Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_043216 PE=4 SV=1	[more]
A0A2K2AUP1	2.4e-19	56.31	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G144400 PE=4 ...	[more]
A0A438EPZ7	5.4e-19	57.01	Peroxidase OS=Vitis vinifera OX=29760 GN=PER10_3 PE=3 SV=1	[more]
A0A438FN09	5.4e-19	57.01	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_020626 PE=4 SV=1	[more]

BLAST of Carg22983 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57500.1	9.2e-11	40.70	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G26520.1	1.2e-10	38.27	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..111
None	No IPR available	PANTHER	PTHR33429	OS02G0708000 PROTEIN-RELATED	coord: 10..92
None	No IPR available	PANTHER	PTHR33429:SF2	OS01G0888850 PROTEIN	coord: 10..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22983-RA	Carg22983-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding