Carg22211 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22211
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transcription initiation factor IIE subunit beta
Location	Carg_Chr16: 3338063 .. 3343375 (+)
RNA-Seq Expression	Carg22211
Synteny	Carg22211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGCAAGAAAAACTAGATAGGTTTAAGAGACAACAAGAAAGATGCCAGACTACCTTGTCTGGCATTGCTGCATCCAAGACTACTACTACTACACCCAGGTTTACGCCTGCTCCAGCCGCTTCAAGACCTCCGGCTCCTGCTATAAAATTTTCAAATGACACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTTCTGGAGGTTCACACCTATCGCCCATCTTTCTTATTTCCCCCTTTTTGTTTTCTTACTTATACCTTATCTGCTTTACCTGGACTATTGTATTTGATCGAATTCATTGGAAGGCTTTGTATAGGGTAGGATTTAGTGCATATTTTTGGGAGTGATTTTAAAAGGGCTAAAATTACTTTTGCCATGTTCATCAAAAGGACTCTAAAAACATGTTTTTTATAATTCAAAATAAATTTAATGTTTGATTTTGTACGAATATGTAATTTTCATAACATCAAAATTAATTTTCAAGTATTAAAAACATGTTTTTAGTGTTTTTTTTTTTTTTTAAATATAAGAAGTGTTTTTAACTATCTCAAAGTCACTCCCAAACATGTCATGTTAATAGACACAGATAGATTCAAAATGAGCAGACCTTATGCTGAAATTTATCATATTTCTTGTTTTTAGTCTGTCCAAATTTTGCTAAATTCGATACATGTCTTTCTGAATGATCAATTTTTGAACCGGGAGATTTGGCTGGTTTGAAAACTTTTTCAGGTAGTGAAACTTGTGATTGCCCGTTAAGATGGCAAGAGGAGCTAGGATCCTCTTTAATGGCTTTTATGTGGTCGTTTTCCTTACTTTGTGTTGGTGAAAAAAAATGCATTTGAACATGCCAATCCCCTTCCCGTACTCTCTGGTTTGAATTGGCTGTGAAAAAGCTAAAAAAAGTCCTGAAATGCACTCTCTACTGTTAGTTAATTCAAACCTCAGGGGTATGTTACAATCTTACAGCTTGCTTATTGTGCATGTTAACAGACAAGACAAGCCTTTACACCTGAGCAAATCAATGAATCATGTTATGTTGATATAAATTCCAACAAAGCTGTCTTTGATAGTTTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGGTAATTTAAATTTTCAAGCACCTGTATACTTTGCATGAACTTGTTCTTGTTTGGTTTAAAAGTTTAAACGTTTAAGATGACGTTTTTTCCTCTTTTTTCTGTTTTTGATATATTCAGTCCAAGCATGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAAGCGTTATGGAAGATTTGCAAGTACGTATAATTGAGAATTTTTTTTATATGCGTTCCCCGTTTTAAATTCGAAAAAAGTGAAAATAACATATCACCCTTGGATGACACTCTCCTCATTTGAACTGCTTGGGTAACAACCTTTGTGAAGCTTAATGTACTGACTATTTTGGACATCAAATGTCTTGTGTAAATTTTGAGCTTTTAAGGCTGTGTATTTTCTTTGCACAATAATTGGAATTATAATTAGTTTACAATTCTAATTACTCTGGCGATTAGTGCAAGAGTCCGTTGAGACCTGGATTCTTATTTGTATACGATATTAAACATAGTGTAAATTAAAGTTGTTAAGTTATTAAGTTTTGATTTGTCCAATAAAAGTGGTATTTTGAGAGTTCATGAAAAACAACTATCTTTGGTAGCTGCTGAATGGTGATTTTATGTTACCCAATAGCCTTAAAACGAAAATAGAAGTAAATATTTGTTTACCAAACTAGCTGTGAGGAAAGCCCCCAATGTCCTTCGCTAGTATACCCTTGTGTTTTCTTTCCTCGTTTTTTCTTCTCTTCTCTCCATTCCTCCAGTTCCAGACTGATTTTAGAGAAAGTTCGTTTCTTCCTACAGAAATCTGATTGATGCCTGTATGGCTTGCTAACTATTCATGTCAATATTCTGGGTTCTTGGTCATGTTATACCTCACAAGTCAGCTTGTTTAATTCTCTTCCAGGTTAGACTGTAGTGTCTCCTTGTACACTAGAAGGCTTTGTTCATTCAACAATTCCTGTTTAAGGCTATTGTGAAAATCTTGGCTGGTAGCTTGAAGATTGAAATGAGTCCTTTCTAATACGATTTCTAACACTCAAGGTGCCTTTATAGCCGGTTGGCAAATTTTAGACCAAGTGCTTATAGCTAATGAAGCTATGAGGACCATAGGGAAAGGAAAGAAGAGGGGATTATCTTCAAAATTGATTTTGAGTAAGTTGATGATCATGTGGATTGGGACTTTTTGGACAAAGCTTTAGGGAAGAAAGTTTTTTGGGGTTAAATGGAGAGGTAAAATGTATAATTGTATTAGGTCAGTTAATTTTTTCATTTTTGTCAACGGGAGGCCTAGAGGTAAGATTTCAACAATGAGAGGCCTTAGACAAGGGGGTTCTCTTTCTCCTTTTCTCTTTATCTTGGTGGTGGATGTCTTGTGTAGATGAGTATCGGCTGGTGTGGATAAGGGTGTTTTCAAGAGTTTTAAGGTGGGCAAGGACTTAGTCTATCATTCGCCTCTTTAGTTTGCGGACAGTTATGACCTTCGAGTGGGGATTCGAGGGGTGAATGTAAATTCCTCTGGAAAGCTATATCTTCAAGTCTTCCCTCTTTTTCTCAATTCATTTATTGTTTTGTGGGAGACAAACTTTGGGTGATTTTTCCCTTCATCTCTACCTTCTCTCGGATAAGAAGTTACATTGGGTGGCTTCAGTGTTGTCATCTACTGACCAATCTTCTTTGACTTTTTTGCACTTTCGTCACCCTCTATCAGATAGAGAGGAGGTTGAGGTGATAGATCTTCTTTTTATCCTTCAAGACCGGCCCTGGGAGGAGGGATGTTAGAAATTAGAAGGTGGTCCCTGATCCTAATAGATGATTCTCTTGTCATTCCTTCTTCAACCTTTTATCCTCTCCCCCTGCTTAATCGGCTAATCGGCTGCTCTTGAGGCGATAGTCTTCTCCCCTTTACGGAAGATAAAAGTTACAGAAAATGTTAAGGTTTTTTCTTGGCAGGTTTTATTAGGGCGAGTCAATACCTTAGATTGTGTCCAAAGGCATTTCTCCTTTGCCTTGTTTCCGCAATCGTGCATTCTCTGTAGGAGGGATCATGATGATCCTAGTCACTTGTTGTGGAAGTGCCAGTTCGTGAATTACCATTAGGACCAGTGGCAGAGTTCTTTAGGGGTTATTGGGGCTCGGAATAGGGATGGGTGTTCTTTTTTGAAAGAGGTGGCTTTGCACTTCCCTTTTAGGGAGAAGCGTATAGTATTTTGTCAGGCAAGCTTCCTTGCTATTTTGTGTGATGTTTGGTTGGAGCGTAAGAGTAGAATTTGTAGGGATGTGGGGAAATCTAGAGTGGAGGTTTGGGAGTTGGTGAGCTTTAATGCTTCCATTTGGGCTTCGGTCACTAAACCGTTTTGTAAGTATGATACCGGTCTTGTTTTTTGGGGCTTGTTTTTTGTTCACTCTTGTATTCTTTTATTTTTTTACGTAAGAAAGTTCGGTTTTTTGCCCCCCCCCCCCCACCCCGCGCCGCCCCCCTCTCAAAAAAAAAAAAGAATAAAAGAATAAAAAATCCTTCCCAAAAGTGGTAGAGAATAATGTTATCTATGAGCAGTTAAAATTGAAATCAAAGGATTTAACCCCATGATTTATAATCCTTGTCAAAACTAATGGATTTTCTAACGAGGAGCAAAGTTTTCACTGAAAAACATGAAATAATTCAAAGAGCAAACAAAAGTACAATCCAATAAGAGGAGCTAATTTGAGACCAACCAAACGAAAAAGAGTCCAATCTAAAAGAATAAGGTCTAACAAGAGTTACAACAAGTCTTGGAAACCAATGTCCAAAGGGAAGCATTATTCTTATGGTTGATGCATCTAAACTGTAGTTGAGAATTTTCAGAAATATACTAGAATTGCTTTTGGTATAAAACTTGTACCATTAAGCTAAGAAAAGGTGGTAGGGTCTAAAAATCCATGTCACAACAACTTCAGTTCCTCGAAGTGATCTTGGTAACCAGAATAAAACATTTGAGGCTAGTATGAAGATGAAGAACTTGAAGATAGCATGTTATTGAGCTTGAAGACTTTGGTATGGCATTCAGAGATTCATTATGACTTAAGTTATGTCAACTTCCCAAATAATGTTTGAAAAATCAACAGTACAAGCATTCTTCATGATATTAGTGAAAAAAGATGAACTTTCCTTGCGCTTGTGGATCAGTTTATCAGTTATTGAGAGAAGTAATTATTTTATTTCACTAGTAGATTACTATGGAAGTTCTGTTAGAATTTGGTTCTTTTATTGTAAATATCTACGTCCATACTTATCTGATACGTCACGAGTTTTACTTATAGGTATTGATTTGGAGGTTGTTTCTTGTAAAGTATGTCTATTTGTTTCCATACTTGTTGATCACCAGTTTTTTGGCCTCCCCAACTTTATGAACTTTGTTTTGATGGAACCGTCTTCTTTGCTTATTAATGAATGGAAAGCACATGGATGTACTCTTCTTTGGTTATATAATGAATGGAAAACACAGTCCATGAGCTTTGCATAATCCTTTCCCCTCTTGTTTAGGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATTGCATACCCAAATGACCCTCGAATTCAAATCAAAGTAGACGATGATCTGAAGCAACTGTTTCGGGAAATTGAATTACCTCGTGATATGCTCGATGTCGAAAAGGATCTGCAGAAGAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGCGAGCCAATGCACAAAATGTGGCGTCCTCGAAACCAAAGCCGAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCACATCTTCCGGAGCTCTTCAAGAATTAAAGAACCATATGCTCTTATTATACTGTCATCTGTGGGCTGATATGCGTAGTCCAAGGACTCTGTAGATAGCATTCAACCATCCATCCATCCATCCCTACTGTTTGATGTATTGCCTTTTGTGAATGTTCTGCGTTTACTTCAAGTAATTGAATAATTTGAATATAAGAGAGAGAGGTTCATTCAACTAGACATATGACATTACAAGTTGATCATTTGTGCAAACTTCTAAATTCTATAAGTTCAAGTTCATTTTATTTTAG

mRNA sequence

ATGGCGTTGCAAGAAAAACTAGATAGGTTTAAGAGACAACAAGAAAGATGCCAGACTACCTTGTCTGGCATTGCTGCATCCAAGACTACTACTACTACACCCAGGTTTACGCCTGCTCCAGCCGCTTCAAGACCTCCGGCTCCTGCTATAAAATTTTCAAATGACACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTTCTGGAGACAAGACAAGCCTTTACACCTGAGCAAATCAATGAATCATGTTATGTTGATATAAATTCCAACAAAGCTGTCTTTGATAGTTTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAAGCGTTATGGAAGATTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATTGCATACCCAAATGACCCTCGAATTCAAATCAAAGTAGACGATGATCTGAAGCAACTGTTTCGGGAAATTGAATTACCTCGTGATATGCTCGATGTCGAAAAGGATCTGCAGAAGAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGCGAGCCAATGCACAAAATGTGGCGTCCTCGAAACCAAAGCCGAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCACATCTTCCGGAGCTCTTCAAGAATTAAAGAACCATATGCTCTTATTATACTGTCATCTGTGGGCTGATATGCGTAGTCCAAGGACTCTGTAGATAGCATTCAACCATCCATCCATCCATCCCTACTGTTTGATGTATTGCCTTTTGTGAATGTTCTGCGTTTACTTCAAGTAATTGAATAATTTGAATATAAGAGAGAGAGGTTCATTCAACTAGACATATGACATTACAAGTTGATCATTTGTGCAAACTTCTAAATTCTATAAGTTCAAGTTCATTTTATTTTAG

Coding sequence (CDS)

ATGGCGTTGCAAGAAAAACTAGATAGGTTTAAGAGACAACAAGAAAGATGCCAGACTACCTTGTCTGGCATTGCTGCATCCAAGACTACTACTACTACACCCAGGTTTACGCCTGCTCCAGCCGCTTCAAGACCTCCGGCTCCTGCTATAAAATTTTCAAATGACACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTTCTGGAGACAAGACAAGCCTTTACACCTGAGCAAATCAATGAATCATGTTATGTTGATATAAATTCCAACAAAGCTGTCTTTGATAGTTTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAAGCGTTATGGAAGATTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATTGCATACCCAAATGACCCTCGAATTCAAATCAAAGTAGACGATGATCTGAAGCAACTGTTTCGGGAAATTGAATTACCTCGTGATATGCTCGATGTCGAAAAGGATCTGCAGAAGAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGCGAGCCAATGCACAAAATGTGGCGTCCTCGAAACCAAAGCCGAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCACATCTTCCGGAGCTCTTCAAGAATTAA

Protein sequence

MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

Homology

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BLAST of Carg22211 vs. NCBI nr
Match: XP_022931511.1 (general transcription factor IIE subunit 2-like [Cucurbita moschata] >XP_023552207.1 general transcription factor IIE subunit 2-like [Cucurbita pepo subsp. pepo] >KAG7015180.1 General transcription factor IIE subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 529.6 bits (1363), Expect = 1.6e-146
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60
           MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60

Query: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120
           HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD
Sbjct: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120

Query: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180
           GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF
Sbjct: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180

Query: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA 240
           DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA
Sbjct: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA 240

Query: 241 QNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           QNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 QNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 274

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BLAST of Carg22211 vs. NCBI nr
Match: XP_022984812.1 (general transcription factor IIE subunit 2-like [Cucurbita maxima])

HSP 1 Score: 528.5 bits (1360), Expect = 3.5e-146
Identity = 273/274 (99.64%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60
           MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60

Query: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120
           HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAVFDSLRNNPKVHYD
Sbjct: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKVHYD 120

Query: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180
           GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF
Sbjct: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180

Query: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA 240
           DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA
Sbjct: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA 240

Query: 241 QNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           QNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 QNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 274

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BLAST of Carg22211 vs. NCBI nr
Match: XP_038906431.1 (general transcription factor IIE subunit 2-like [Benincasa hispida])

HSP 1 Score: 505.0 bits (1299), Expect = 4.1e-139
Identity = 261/275 (94.91%), Postives = 272/275 (98.91%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAASRPPAPAIKFSNDTERL 60
           MALQE+LDRFK+QQERCQTTLSGIAA+K+ + +TP+FTPAPAASRPPAPA+KFSNDTERL
Sbjct: 1   MALQEQLDRFKKQQERCQTTLSGIAAAKSASKSTPKFTPAPAASRPPAPAVKFSNDTERL 60

Query: 61  QHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHY 120
           QHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAVFDSLRNNPKVHY
Sbjct: 61  QHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKVHY 120

Query: 121 DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSN 180
           DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLLSN
Sbjct: 121 DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSN 180

Query: 181 FDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRAN 240
           FDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRAN
Sbjct: 181 FDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRAN 240

Query: 241 AQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           AQ+VASSKPK KKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 AQHVASSKPKLKKKKQEISKRTKLTNAHLPELFKN 275

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BLAST of Carg22211 vs. NCBI nr
Match: XP_011653191.1 (general transcription factor IIE subunit 2 [Cucumis sativus] >KGN53349.1 hypothetical protein Csa_014626 [Cucumis sativus])

HSP 1 Score: 501.9 bits (1291), Expect = 3.5e-138
Identity = 260/277 (93.86%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           ANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Carg22211 vs. NCBI nr
Match: XP_008452012.1 (PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >XP_008452013.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >KAA0044840.1 general transcription factor IIE subunit 2-like [Cucumis melo var. makuwa] >TYK16624.1 general transcription factor IIE subunit 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 498.4 bits (1282), Expect = 3.9e-137
Identity = 260/277 (93.86%), Postives = 272/277 (98.19%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RP APA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           ANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Carg22211 vs. ExPASy Swiss-Prot
Match: Q54KJ8 (General transcription factor IIE subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2e2 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.5e-14
Identity = 71/270 (26.30%), Postives = 141/270 (52.22%), Query Frame = 0


Query: 10  FKRQQERCQTTLSGI-AASKTTTTTPRFTPAPAASRPPAPAIKFSN-DTERLQHINSIRK 69
           FK  Q +   TL+ I   S +T +  ++ P  +     + A + S+  T        +++
Sbjct: 6   FKETQMKAIETLNSIKKPSSSTNSAFKYIPKISGGGGSSSANRQSSIYTANTLRDKQVKE 65

Query: 70  SPVGAQIKRVIDLL--LETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYDGR-RF 129
            P    +  +++ L  LE   A T E ++ + ++ I+    + + LRNN K+   G  RF
Sbjct: 66  KPSNRIVYDIVNYLKTLEGIPADTKEIMHSTNHM-IDDKPEILELLRNNEKIIDHGNDRF 125

Query: 130 SYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNFDSQE 189
           S+K K +++ +  +L L+  +P GI V +L +SY +   D++ LK + Q++ +   +S  
Sbjct: 126 SFKPKFNVRTQRDILDLLPNYPGGILVSELAESYNNAESDVKKLKETKQIFAIKAAESAC 185

Query: 190 DIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQNVA 249
           DI +PND R+++ +  +L  +++ I+LP +  D+EK+++  G+    +  +   +A+   
Sbjct: 186 DIIFPNDERLRVPLSSELVDMWKSIKLPNE-ADLEKEMKDAGL----SVVESVESARQTK 245

Query: 250 SSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           S+K K ++KK    + TK+TN H+     N
Sbjct: 246 STKLKKERKK----RITKVTNTHIENFNPN 265

[Close]

BLAST of Carg22211 vs. ExPASy Swiss-Prot
Match: P79011 (Transcription initiation factor IIE subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tfa2 PE=1 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 3.1e-12
Identity = 69/240 (28.75%), Postives = 123/240 (51.25%), Query Frame = 0


Query: 41  AASRPPAPAIKFSNDTERLQHINSIRKSPVG----AQIKRVIDLLLETRQAFTPEQINES 100
           AAS P + ++K       L + +    S VG    +Q+   ++ L E  +  T E+I  +
Sbjct: 47  AASSPGSYSLKKKRSKTSLVY-SQPADSGVGTHYLSQLHYAVEYLKERNEPKTAEEI--A 106

Query: 101 CYVDINSNKAVFDSLRNNPKVHYDGRR--FSYKSKHDLKDKNQLLYLI--RKFPEGIAVI 160
            Y+       + + L+ N +++YD R   F++K  H+++    LL  +  +K   G+++ 
Sbjct: 107 SYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPLHNIRSGAGLLAYLDSQKTHVGMSIK 166

Query: 161 DLKDSYPSVMEDLQALKASGQVWLL-SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIEL 220
           +L+D +P+V  +L+ L+  G+V LL +  D    + + ND      VD + +Q++ EI +
Sbjct: 167 ELRDGWPNVTVELEELEKQGEVLLLRTRKDGVPKMVWRNDKSCDCHVDKEFQQVWHEIPI 226

Query: 221 PRDMLDVEKDLQKNGMKPAT---NTAKRRANAQNVASSKPKPKKKKQEISKRTKLTNAHL 269
           P   LD+  +L K G+KP +   +T KR  + Q      PK KK K   ++R K+TN HL
Sbjct: 227 P-PTLDLASELGKYGLKPTSVDPSTVKRAGHNQT-----PKQKKPK---TRRGKITNTHL 274

[Close]

BLAST of Carg22211 vs. ExPASy TrEMBL
Match: A0A6J1ETU7 (Transcription initiation factor IIE subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111437664 PE=4 SV=1)

HSP 1 Score: 529.6 bits (1363), Expect = 7.6e-147
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60
           MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60

Query: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120
           HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD
Sbjct: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120

Query: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180
           GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF
Sbjct: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180

Query: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA 240
           DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA
Sbjct: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA 240

Query: 241 QNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           QNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 QNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 274

[Close]

BLAST of Carg22211 vs. ExPASy TrEMBL
Match: A0A6J1J372 (Transcription initiation factor IIE subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482983 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.7e-146
Identity = 273/274 (99.64%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60
           MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60

Query: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120
           HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAVFDSLRNNPKVHYD
Sbjct: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKVHYD 120

Query: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180
           GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF
Sbjct: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180

Query: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA 240
           DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA
Sbjct: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA 240

Query: 241 QNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           QNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 QNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 274

[Close]

BLAST of Carg22211 vs. ExPASy TrEMBL
Match: A0A0A0KWU5 (Transcription initiation factor IIE subunit beta OS=Cucumis sativus OX=3659 GN=Csa_4G049080 PE=3 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 1.7e-138
Identity = 260/277 (93.86%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           ANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Carg22211 vs. ExPASy TrEMBL
Match: A0A1S3BS95 (Transcription initiation factor IIE subunit beta OS=Cucumis melo OX=3656 GN=LOC103493148 PE=3 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 1.9e-137
Identity = 260/277 (93.86%), Postives = 272/277 (98.19%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RP APA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           ANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Carg22211 vs. ExPASy TrEMBL
Match: A0A5A7TNR4 (Transcription initiation factor IIE subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004520 PE=3 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 1.9e-137
Identity = 260/277 (93.86%), Postives = 272/277 (98.19%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RP APA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           ANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Carg22211 vs. TAIR 10
Match: AT4G20330.1 (Transcription initiation factor TFIIE, beta subunit )

HSP 1 Score: 351.3 bits (900), Expect = 7.1e-97
Identity = 192/280 (68.57%), Postives = 234/280 (83.57%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPR-FTPAPAA---SRPPAPAIKFSNDT 60
           MAL+E+LD+F +QQ +CQ+TLS IA+S+  T++ R   P PAA    +P A  +KFS+DT
Sbjct: 1   MALKEQLDKFNKQQVKCQSTLSSIASSRERTSSSRQNVPLPAAITQKKPDAAPVKFSSDT 60

Query: 61  ERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPK 120
           ERLQ+IN+IRK+PVGAQIKRVIDLL E R A TPEQINE C+VD+++NKAVFDSLR NPK
Sbjct: 61  ERLQNINNIRKAPVGAQIKRVIDLLYERRLALTPEQINEWCHVDMHANKAVFDSLRKNPK 120

Query: 121 VHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWL 180
            HYDGRRFSYK+ HD+ DKNQLL L+RK+ +GIAV+DLKD+YP+VMEDL+AL ASG ++L
Sbjct: 121 AHYDGRRFSYKATHDVNDKNQLLSLVRKYLDGIAVVDLKDAYPNVMEDLKALSASGDIYL 180

Query: 181 LSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKR 240
           LSN  SQEDIAYPND + +IKVDD+ K LFR+I +P DMLDVEK+L K G+KPATNTA+R
Sbjct: 181 LSN--SQEDIAYPNDFKCEIKVDDEFKALFRDINIPNDMLDVEKELLKIGLKPATNTAER 240

Query: 241 RANAQ-NVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN 275
           RA AQ +  S+KPK  KKKKQEISKRTKLTNAHLPELF+N
Sbjct: 241 RAAAQTHGISNKPKDKKKKKQEISKRTKLTNAHLPELFQN 278

[Close]

BLAST of Carg22211 vs. TAIR 10
Match: AT4G21010.1 (Transcription initiation factor TFIIE, beta subunit )

HSP 1 Score: 288.1 bits (736), Expect = 7.4e-78
Identity = 161/277 (58.12%), Postives = 214/277 (77.26%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60
           MAL+E+LD+F +QQE+CQ+TLS I++S+T  +      A  + +P     KFS +T++LQ
Sbjct: 1   MALREQLDKFNKQQEKCQSTLSSISSSRTALSRSYVPAATTSQKPNVFRGKFSENTKQLQ 60

Query: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120
           HI +IR S VGAQ+K VIDLL +TR A+T EQINE+CYVD+++NKAVFDSLR NPKVHYD
Sbjct: 61  HITNIRNSAVGAQMKIVIDLLFKTRLAYTAEQINEACYVDMHNNKAVFDSLRKNPKVHYD 120

Query: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQV-WLLSN 180
           GRRFSYK+ H++KDK QLL  + K  + I V DLKD+YP+VMEDL++LK+SG++ WLLSN
Sbjct: 121 GRRFSYKATHNIKDKKQLLSFVNKSDKVIDVSDLKDAYPNVMEDLKSLKSSGEIFWLLSN 180

Query: 181 FDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRAN 240
            DS+E   Y N+     K+DD+LK LFR+I +P DML+VEK+L K G+KPATN A+RRA 
Sbjct: 181 TDSKEGTVYRNNMEYP-KIDDELKALFRDI-IPSDMLEVEKELLKIGLKPATNIAERRAA 240

Query: 241 AQ-NVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN 275
            Q +  S+KPK  KKKK+EI+ RTKLTN+H+ ELF++
Sbjct: 241 EQLHGVSNKPKDKKKKKKEITNRTKLTNSHMLELFQS 275

The following BLAST results are available for this feature:

BLAST of Carg22211 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931511.1	1.6e-146	100.00	general transcription factor IIE subunit 2-like [Cucurbita moschata] >XP_0235522...	[more]
XP_022984812.1	3.5e-146	99.64	general transcription factor IIE subunit 2-like [Cucurbita maxima]	[more]
XP_038906431.1	4.1e-139	94.91	general transcription factor IIE subunit 2-like [Benincasa hispida]	[more]
XP_011653191.1	3.5e-138	93.86	general transcription factor IIE subunit 2 [Cucumis sativus] >KGN53349.1 hypothe...	[more]
XP_008452012.1	3.9e-137	93.86	PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >XP_00...	[more]

BLAST of Carg22211 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54KJ8	2.5e-14	26.30	General transcription factor IIE subunit 2 OS=Dictyostelium discoideum OX=44689 ...	[more]
P79011	3.1e-12	28.75	Transcription initiation factor IIE subunit beta OS=Schizosaccharomyces pombe (s...	[more]

BLAST of Carg22211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETU7	7.6e-147	100.00	Transcription initiation factor IIE subunit beta OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1J372	1.7e-146	99.64	Transcription initiation factor IIE subunit beta OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A0A0KWU5	1.7e-138	93.86	Transcription initiation factor IIE subunit beta OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A1S3BS95	1.9e-137	93.86	Transcription initiation factor IIE subunit beta OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7TNR4	1.9e-137	93.86	Transcription initiation factor IIE subunit beta OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Carg22211 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20330.1	7.1e-97	68.57	Transcription initiation factor TFIIE, beta subunit	[more]
AT4G21010.1	7.4e-78	58.12	Transcription initiation factor TFIIE, beta subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003166	Transcription factor TFIIE beta subunit, DNA-binding domain	PFAM	PF02186	TFIIE_beta	coord: 72..131 e-value: 1.3E-9 score: 38.2
IPR003166	Transcription factor TFIIE beta subunit, DNA-binding domain	PROSITE	PS51351	TFIIE_BETA_C	coord: 58..133 score: 11.039589
IPR040501	TFA2, Winged helix domain 2	PFAM	PF18121	TFA2_Winged_2	coord: 133..190 e-value: 4.8E-15 score: 55.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..246
None	No IPR available	PANTHER	PTHR12716:SF13	BNAA02G21830D PROTEIN	coord: 1..274
IPR016656	Transcription initiation factor TFIIE, beta subunit	PANTHER	PTHR12716	TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT	coord: 1..274

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22211-RA	Carg22211-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005673	transcription factor TFIIE complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003743	translation initiation factor activity