Carg21659 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21659
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr01: 4381198 .. 4381586 (-)
RNA-Seq Expression	Carg21659
Synteny	Carg21659

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATATTGACCTTAAGTGCTTCTTGTAACGTCAAAAATGGTTATGGGAGGGTCCAAAGTGGTAGGAAAGCATCTGAAATAATAGAACAGGGTCCAAATTGGACAGACCGAGCCAACTCTAGCAGGGGTCATGGGTCGGATCGAGGCGTAGGTTGTGGTTCAGTCACCGGTCCGGCCGAAGGACGCGTGGACCAGTGACCTTATATTTGCAAAGAGATGAACTGATACTATCAAGCGAGAGACCGATGTACTCTTTTCAGTTTCCAACAGCAGGTTTTGATGTGCCCACTTTTCCCAACATCTATGTTATTGCTCGGATTGTACTTGATTTTGATGTGCCCACTTTTCCCAACATCTATGTTATTGATCGCACACACTTGTTTTGA

mRNA sequence

ATGGCCATATTGACCTTAAGTGCTTCTTGTAACGTCAAAAATGGTTATGGGAGGGTCCAAAGTGGTAGGAAAGCATCTGAAATAATAGAACAGGGTCCAAATTGGACAGACCGAGCCAACTCTAGCAGGGGTCATGGGTCGGATCGAGGCGTAGGTTGTGGTTCAGTCACCGGTCCGGCCGAAGGACGCTTTCCAACAGCAGGTTTTGATGTGCCCACTTTTCCCAACATCTATGTTATTGCTCGGATTGTACTTGATTTTGATGTGCCCACTTTTCCCAACATCTATGTTATTGATCGCACACACTTGTTTTGA

Coding sequence (CDS)

ATGGCCATATTGACCTTAAGTGCTTCTTGTAACGTCAAAAATGGTTATGGGAGGGTCCAAAGTGGTAGGAAAGCATCTGAAATAATAGAACAGGGTCCAAATTGGACAGACCGAGCCAACTCTAGCAGGGGTCATGGGTCGGATCGAGGCGTAGGTTGTGGTTCAGTCACCGGTCCGGCCGAAGGACGCTTTCCAACAGCAGGTTTTGATGTGCCCACTTTTCCCAACATCTATGTTATTGCTCGGATTGTACTTGATTTTGATGTGCCCACTTTTCCCAACATCTATGTTATTGATCGCACACACTTGTTTTGA

Protein sequence

MAILTLSASCNVKNGYGRVQSGRKASEIIEQGPNWTDRANSSRGHGSDRGVGCGSVTGPAEGRFPTAGFDVPTFPNIYVIARIVLDFDVPTFPNIYVIDRTHLF

Homology

[Close]

BLAST of Carg21659 vs. NCBI nr
Match: KAG7037091.1 (hypothetical protein SDJN02_00712, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.4 bits (542), Expect = 9.4e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MAILTLSASCNVKNGYGRVQSGRKASEIIEQGPNWTDRANSSRGHGSDRGVGCGSVTGPA 60
           MAILTLSASCNVKNGYGRVQSGRKASEIIEQGPNWTDRANSSRGHGSDRGVGCGSVTGPA
Sbjct: 1   MAILTLSASCNVKNGYGRVQSGRKASEIIEQGPNWTDRANSSRGHGSDRGVGCGSVTGPA 60

Query: 61  EGRFPTAGFDVPTFPNIYVIARIVLDFDVPTFPNIYVIDRTHLF 105
           EGRFPTAGFDVPTFPNIYVIARIVLDFDVPTFPNIYVIDRTHLF
Sbjct: 61  EGRFPTAGFDVPTFPNIYVIARIVLDFDVPTFPNIYVIDRTHLF 104

The following BLAST results are available for this feature:

BLAST of Carg21659 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037091.1	9.4e-52	100.00	hypothetical protein SDJN02_00712, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg21659 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg21659 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg21659 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21659-RA	Carg21659-RA	mRNA