Carg21484 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21484
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 7386535 .. 7387161 (+)
RNA-Seq ExpressionCarg21484
SyntenyCarg21484
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCAGATTTCCCCCAAAGAACATAAGCCCGCATGGCGGAATTGTAAACATTGGCACAGTGCTGAAGTTCATATCTGGTGCGGCCATCGTCAAAATTAAGAGCATAGCTACTGGGATCATACTGAAACTTGAGTTTAAGTTGTCGGTTGCTTCCATTCTTGATAGCCTTCTTTAAAGCCGCCCTCACCCTCCCGAACAAATTCAAGCATTGCTTTTTACCGTACGCATTCATCCGCTCCAACCTTCTACCGCCCTCCAGTTTCATTGCGAGCCCACGACCTGTTCGATAAAAGTCCCCAAAGAATTACTATATCGGGTTGGAGTTTTGAAAAGAGCGGCAATGGTAGAGCGCAAGGTTTGTTTGAAGGAAAATTGAGAATTAAAGATGAAAGGGGGTGGGGGTGGTGGTGGTGCACATTGGAAGGCTCAAATTCTATGATTGAGGAGGGAGAGGTGGGAGAAAAGAGGAGATGGTTGGCGCAGTGGCAGTGGGCAGAGAGCCTCTCTCTCAAATGTCGTATCGCTATCAGAACTTGTTGCTGGGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTATACAGCACCCGTTTGAAACGGTAACTCCCAAACCATTATAA

mRNA sequence

ATGACTCAGATTTCCCCCAAAGAACATAAGCCCGCATGGCGGAATTGTAAACATTGGCACAGTGCTGAACCTTCTTTAAAGCCGCCCTCACCCTCCCGAACAAATTCAAGCATTGCTTTTTACCGTACGCATTCATCCGCTCCAACCTTCTACCGCCCTCCAGTTTCATTGCGAGCCCACGACCTGTTCGATAAAAGTCCCCAAAGAATTACTATATCGGGTTGGAGTTTTGAAAAGAGCGGCAATGGTAGAGCGCAAGGTTTGTTTGAAGGAAAATTGAGAATTAAAGATGAAAGGGGGTGGGGGTGGTGGTGGTGCACATTGGAAGGCTCAAATTCTATGATTGAGGAGGGAGAGGTGGGAGAAAAGAGGAGATGGTTGGCGCAGTGGCAGTGGGCAGAGAGCCTCTCTCTCAAATGTCGTATCGCTATCAGAACTTGTTGCTGGGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTATACAGCACCCGTTTGAAACGGTAACTCCCAAACCATTATAA

Coding sequence (CDS)

ATGACTCAGATTTCCCCCAAAGAACATAAGCCCGCATGGCGGAATTGTAAACATTGGCACAGTGCTGAACCTTCTTTAAAGCCGCCCTCACCCTCCCGAACAAATTCAAGCATTGCTTTTTACCGTACGCATTCATCCGCTCCAACCTTCTACCGCCCTCCAGTTTCATTGCGAGCCCACGACCTGTTCGATAAAAGTCCCCAAAGAATTACTATATCGGGTTGGAGTTTTGAAAAGAGCGGCAATGGTAGAGCGCAAGGTTTGTTTGAAGGAAAATTGAGAATTAAAGATGAAAGGGGGTGGGGGTGGTGGTGGTGCACATTGGAAGGCTCAAATTCTATGATTGAGGAGGGAGAGGTGGGAGAAAAGAGGAGATGGTTGGCGCAGTGGCAGTGGGCAGAGAGCCTCTCTCTCAAATGTCGTATCGCTATCAGAACTTGTTGCTGGGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTATACAGCACCCGTTTGAAACGGTAACTCCCAAACCATTATAA

Protein sequence

MTQISPKEHKPAWRNCKHWHSAEPSLKPPSPSRTNSSIAFYRTHSSAPTFYRPPVSLRAHDLFDKSPQRITISGWSFEKSGNGRAQGLFEGKLRIKDERGWGWWWCTLEGSNSMIEEGEVGEKRRWLAQWQWAESLSLKCRIAIRTCCWAAAAAAAAAAAAGIQHPFETVTPKPL
Homology
[Close]
BLAST of Carg21484 vs. NCBI nr
Match: KAG7019633.1 (hypothetical protein SDJN02_18596, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 369.8 bits (948), Expect = 1.3e-98
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 1   MTQISPKEHKPAWRNCKHWHSAEPSLKPPSPSRTNSSIAFYRTHSSAPTFYRPPVSLRAH 60
           MTQISPKEHKPAWRNCKHWHSAEPSLKPPSPSRTNSSIAFYRTHSSAPTFYRPPVSLRAH
Sbjct: 1   MTQISPKEHKPAWRNCKHWHSAEPSLKPPSPSRTNSSIAFYRTHSSAPTFYRPPVSLRAH 60

Query: 61  DLFDKSPQRITISGWSFEKSGNGRAQGLFEGKLRIKDERGWGWWWCTLEGSNSMIEEGEV 120
           DLFDKSPQRITISGWSFEKSGNGRAQGLFEGKLRIKDERGWGWWWCTLEGSNSMIEEGEV
Sbjct: 61  DLFDKSPQRITISGWSFEKSGNGRAQGLFEGKLRIKDERGWGWWWCTLEGSNSMIEEGEV 120

Query: 121 GEKRRWLAQWQWAESLSLKCRIAIRTCCWAAAAAAAAAAAAGIQHPFETVTPKPL 176
           GEKRRWLAQWQWAESLSLKCRIAIRTCCWAAAAAAAAAAAAGIQHPFETVTPKPL
Sbjct: 121 GEKRRWLAQWQWAESLSLKCRIAIRTCCWAAAAAAAAAAAAGIQHPFETVTPKPL 175

[Close]
BLAST of Carg21484 vs. NCBI nr
Match: KAG6584015.1 (hypothetical protein SDJN03_19947, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.2 bits (409), Expect = 4.2e-36
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0 

Query: 92  KLRIKDERGWGWWWCTLEGSNSMIEEGEVGEKRRWLAQWQWAESLSLKCRIAIRTCCWAA 151
           +LRIKDERGW WWWCTLEGSNSMIEE EVGEKRRWLAQWQWAESLSLKCRIAIRTCCW  
Sbjct: 11  ELRIKDERGWWWWWCTLEGSNSMIEEEEVGEKRRWLAQWQWAESLSLKCRIAIRTCCW-- 70

Query: 152 AAAAAAAAAAGIQHPFETVTPKPL 176
           A AAAAAAAAGIQHPFETVTPKPL
Sbjct: 71  ADAAAAAAAAGIQHPFETVTPKPL 92

The following BLAST results are available for this feature:
BLAST of Carg21484 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019633.11.3e-98100.00hypothetical protein SDJN02_18596, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6584015.14.2e-3692.86hypothetical protein SDJN03_19947, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg21484 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21484 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21484 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21484-RACarg21484-RAmRNA