Carg21297 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21297
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmethyltransferase-like protein 17, mitochondrial isoform X1
LocationCarg_Chr15: 9176845 .. 9178825 (+)
RNA-Seq ExpressionCarg21297
SyntenyCarg21297
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGCTCTGCGCAGGTGGCCGAGGAAGATCTTCGACGGCGATTTGAAGCAAATGGCGACGGTGGGAGCTAGTGCGGTGGTGCAAAATGGTCGAAATGTGGGAAAATGTCCAAATTAATAAAACTAATTGCATGGCTAAATTAATAAAAATAATATTAATTTTACATTTTATCCATTTTATCCATTTTTTTAATAATTATTTAAAAAATAAATTACGTCGTCGAGGTTACACTTCCTCCGTTCGTTTCTTCCTCGGAAATCTGTGCGATTGTGTTTCTCTCTTTGCGTCTCATTCCATGGCGTTTTCTGTGCATTCCAGAGCAAGAAGTACTACAATAAGGTGCTGAGTCTGTCGGAATCATTCAGTGGTATCAAGGATGTTAATCTGCACCTGGCAGCAACCACTTCAAAGGAACTTGTTGAAGATCCTCTGAAATCAGTAGAGCAATCCAAGCGCTGGAAGATTAAGAGTTGCTATGGTGATATTGGCTTTCAGTACAGAGACGATGAGACGATTGCTTACGTCGCCTCCCGTTCTTAACGAGGTAGCATAGGTTTCTGCTTACTTGCTAACTCACTATATTAGCTATCTTTCAAATCTTCAGAAATTCGAGAAATGAACTGGAATTGAATAGCATATGAGAATGCATTTGAATATGGTGAAATATTTAGTAGAAAGAATTTGCCTTCAGATGATAGTTATCATAAAGGATTTAACGATTTAAGACTCAATCATGTTCTTATTGAAACTTGTATGATTATATTTGGGAGCTTGCTGTTTATTTGAAGTCATTCTCATATTCAGGTCGGTTTCTATGATTGGGAATGATTTTGTCATAACTTCTTTTTCCTTTTTTACACGTTATGCAGTTAGGTTCGTAGAAGGCTACCCGATTTCTCTCCATCTAATGTATTGGATTTTGGTGCTGGCACTGGTTCAGCTTTCTGGTAAAAAGTGCTATGCTTGATTTCACAGGCTACTTTATTCATTTATTTGATGTAGAATGCATGGACTGTCATAAGCCTATAATAGCTGATTACATTGTTGTAATGGCCTAGATCCACCGCTAGCAGATATTGTCTTCTTTGGGCTTTTCCTTTCCCCTTTTGGGCTTCCCTTCAAGGCTTTAAAAAGCGTTTTCTATTTCTCTTTCTGCACTTGCTTCTATCTTTCTAATCAGTGTCATGATGGAAAATGTCCATTAGAGAATTCTAGGAAGTATTGTCATTTTGTTCAGTGGTTGGAGAGGACATCTACGCAACGAGCTTACAAGGTTCCTCTTCTTAGCATTCAATCCCCTGTTTCTTAAGCATTCATGTTGTCAGCTGTATGTTATCTTATGCTTAACATGGATATTTGATCATTTTTTAACAAGAGAAGTTGCAATGTTCATGTGTTCAATTTCTCTATTTGCTTTTCGTGACCGACAATTTGCCTTCTCGCTTTTGGATCTTGCACCCATCTCTTATTTTTCTAGTGGCTCGAAATACCTGAGATATACCACTCAGTGTTTAAGTCTGTGTGATAGTGAATGCCTAATGATCATCTAAAGGGGTAGTATCTGAACACATAAAATGAGTATATCAATTTTACTTTGTTATGTCTTGTATGCTTAGTTATGATTAATATTCAACAAGTTTCTTAGACGACGTAGATTCATTCAGTTCTATATGTCGAGTTCTTTAAAAAAGAAAGTAAAAGAGATTTTGTGGGGAAAGCGATTTTCCATCTTTTATTGTAGATCTTGAATGCTTTTATGAAGAATCTGGTTGCACCCTCAGTGTTTAATAAAATATATGGATCTGAGACACCTTCGCATATTATCCTTACTTTGCCCATGGCAGAGGATCTAATAAAGTTGAACACACAAGATATTGTTCCATACCAAGAAGTGGATCCAGATACATATGATTCTGATGTCATGGAAACTGAAACTCTTGATGAAGATGGAGACGAGGGAGGAGAGGAACAAGGAGATTAG

mRNA sequence

ATCGCTCTGCGCAGGTGGCCGAGGAAGATCTTCGACGGCGATTTGAAGCAAATGGCGACGGTGGGAGCTAGTGCGGTGGTGCAAAATGGTCGAAATAGCAAGAAGTACTACAATAAGGTGCTGAGTCTGTCGGAATCATTCAGTGGTATCAAGGATGTTAATCTGCACCTGGCAGCAACCACTTCAAAGGAACTTGTTGAAGATCCTCTGAAATCAGTAGAGCAATCCAAGCGCTGGAAGATTAAGAGTTGCTATGGTGATATTGGCTTTCAGTACAGAGACGATGAGACGATTGCTTACGTCGCCTCCCTTAGGTTCGTAGAAGGCTACCCGATTTCTCTCCATCTAATGTATTGGATTTTGGTGCTGGCACTGGTTCAGCTTTCTGAGGATCTAATAAAGTTGAACACACAAGATATTGTTCCATACCAAGAAGTGGATCCAGATACATATGATTCTGATGTCATGGAAACTGAAACTCTTGATGAAGATGGAGACGAGGGAGGAGAGGAACAAGGAGATTAG

Coding sequence (CDS)

ATCGCTCTGCGCAGGTGGCCGAGGAAGATCTTCGACGGCGATTTGAAGCAAATGGCGACGGTGGGAGCTAGTGCGGTGGTGCAAAATGGTCGAAATAGCAAGAAGTACTACAATAAGGTGCTGAGTCTGTCGGAATCATTCAGTGGTATCAAGGATGTTAATCTGCACCTGGCAGCAACCACTTCAAAGGAACTTGTTGAAGATCCTCTGAAATCAGTAGAGCAATCCAAGCGCTGGAAGATTAAGAGTTGCTATGGTGATATTGGCTTTCAGTACAGAGACGATGAGACGATTGCTTACGTCGCCTCCCTTAGGTTCGTAGAAGGCTACCCGATTTCTCTCCATCTAATGTATTGGATTTTGGTGCTGGCACTGGTTCAGCTTTCTGAGGATCTAATAAAGTTGAACACACAAGATATTGTTCCATACCAAGAAGTGGATCCAGATACATATGATTCTGATGTCATGGAAACTGAAACTCTTGATGAAGATGGAGACGAGGGAGGAGAGGAACAAGGAGATTAG

Protein sequence

IALRRWPRKIFDGDLKQMATVGASAVVQNGRNSKKYYNKVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETIAYVASLRFVEGYPISLHLMYWILVLALVQLSEDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGDEGGEEQGD
Homology
BLAST of Carg21297 vs. NCBI nr
Match: KAG7017034.1 (hypothetical protein SDJN02_22146, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 339.7 bits (870), Expect = 1.5e-89
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0

Query: 1   IALRRWPRKIFDGDLKQMATVGASAVVQNGRNSKKYYNKVLSLSESFSGIKDVNLHLAAT 60
           IALRRWPRKIFDGDLKQMATVGASAVVQNGRNSKKYYNKVLSLSESFSGIKDVNLHLAAT
Sbjct: 1   IALRRWPRKIFDGDLKQMATVGASAVVQNGRNSKKYYNKVLSLSESFSGIKDVNLHLAAT 60

Query: 61  TSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETIAYVASLRFVEGYPISLHLMYWI 120
           TSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETIAYVASLRFVEGYPISLHLMYWI
Sbjct: 61  TSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETIAYVASLRFVEGYPISLHLMYWI 120

Query: 121 LVLALVQLSEDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGDEGGEEQGD 175
           LVLALVQLSEDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGDEGGEEQGD
Sbjct: 121 LVLALVQLSEDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGDEGGEEQGD 174

BLAST of Carg21297 vs. NCBI nr
Match: KAG6579574.1 (hypothetical protein SDJN03_24022, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-38
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0

Query: 18  MATVGASAVVQNGRNSKKYYNKVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSK 77
           MATVGASAVVQNGRNSKKYY KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSK
Sbjct: 1   MATVGASAVVQNGRNSKKYYTKVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSK 60

Query: 78  RWKIKSCYGDIGFQYRDDETIAYVAS 104
           RWKIKSCYGDIGFQYRDDETIAYVAS
Sbjct: 61  RWKIKSCYGDIGFQYRDDETIAYVAS 86

BLAST of Carg21297 vs. NCBI nr
Match: XP_022957993.1 (methyltransferase-like protein 17, mitochondrial isoform X1 [Cucurbita moschata] >KAG6605595.1 Methyltransferase-like protein 17, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-25
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0

Query: 39  KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 98
           KVL LSESFSGIKDVNL LAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54  KVLRLSESFSGIKDVNLQLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 113

Query: 99  AYVAS 104
           AYVAS
Sbjct: 114 AYVAS 118

BLAST of Carg21297 vs. NCBI nr
Match: XP_022957993.1 (methyltransferase-like protein 17, mitochondrial isoform X1 [Cucurbita moschata] >KAG6605595.1 Methyltransferase-like protein 17, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-05
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0

Query: 130 EDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGDEGGEEQGD 175
           EDLIKLNTQ IVPYQEVDP TYDSDV+ETE LD+  +EG EEQG+
Sbjct: 394 EDLIKLNTQ-IVPYQEVDPVTYDSDVIETEILDDGEEEGEEEQGE 437


HSP 2 Score: 126.3 bits (316), Expect = 2.5e-25
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0

Query: 39  KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 98
           KVL LSESFSGIKDVNL LAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54  KVLRLSESFSGIKDVNLQLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 113

Query: 99  AYVAS 104
           AYVAS
Sbjct: 114 AYVAS 118

BLAST of Carg21297 vs. NCBI nr
Match: KAG7035505.1 (Methyltransferase-like protein 17, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-05
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0

Query: 130 EDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGDEGGEEQGD 175
           EDLIKLNTQ IVPYQEVDP TYDSDV+ETE LD+  +EG EEQG+
Sbjct: 394 EDLIKLNTQ-IVPYQEVDPVTYDSDVIETEILDDGEEEGEEEQGE 437


HSP 2 Score: 126.3 bits (316), Expect = 2.5e-25
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0

Query: 39  KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 98
           KVL LSESFSGIKDVNL LAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54  KVLRLSESFSGIKDVNLQLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 113

Query: 99  AYVAS 104
           AYVAS
Sbjct: 114 AYVAS 118

BLAST of Carg21297 vs. ExPASy TrEMBL
Match: A0A6J1E517 (methyltransferase-like protein 17, mitochondrial isoform X1 OS=Momordica charantia OX=3673 GN=LOC111026114 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.2e-25
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0

Query: 39  KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 98
           KVL LSESFSGIKDVNL LAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54  KVLRLSESFSGIKDVNLQLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 113

Query: 99  AYVAS 104
           AYVAS
Sbjct: 114 AYVAS 118

BLAST of Carg21297 vs. ExPASy TrEMBL
Match: A0A6J1E517 (methyltransferase-like protein 17, mitochondrial isoform X1 OS=Momordica charantia OX=3673 GN=LOC111026114 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.5e-07
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 0

Query: 130 EDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGDEGGEEQGD 175
           EDLIKLNTQDIVPYQEVDP TYDSDV+ETE  D DG+E  EEQG+
Sbjct: 395 EDLIKLNTQDIVPYQEVDPVTYDSDVIETENFD-DGEEEEEEQGE 438


HSP 2 Score: 126.3 bits (316), Expect = 1.2e-25
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0

Query: 39  KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 98
           KVL LSESFSGIKDVNL LAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54  KVLRLSESFSGIKDVNLQLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 113

Query: 99  AYVAS 104
           AYVAS
Sbjct: 114 AYVAS 118

BLAST of Carg21297 vs. ExPASy TrEMBL
Match: A0A6J1E0U3 (methyltransferase-like protein 17, mitochondrial isoform X2 OS=Momordica charantia OX=3673 GN=LOC111026114 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.5e-07
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 0

Query: 130 EDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGDEGGEEQGD 175
           EDLIKLNTQDIVPYQEVDP TYDSDV+ETE  D DG+E  EEQG+
Sbjct: 394 EDLIKLNTQDIVPYQEVDPVTYDSDVIETENFD-DGEEEEEEQGE 437


HSP 2 Score: 126.3 bits (316), Expect = 1.2e-25
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0

Query: 39  KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 98
           KVL LSESFSGIKDVNL LAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54  KVLRLSESFSGIKDVNLQLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 113

Query: 99  AYVAS 104
           AYVAS
Sbjct: 114 AYVAS 118

BLAST of Carg21297 vs. ExPASy TrEMBL
Match: A0A6J1H1V3 (methyltransferase-like protein 17, mitochondrial isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459357 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.2e-06
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0

Query: 130 EDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGDEGGEEQGD 175
           EDLIKLNTQ IVPYQEVDP TYDSDV+ETE LD+  +EG EEQG+
Sbjct: 394 EDLIKLNTQ-IVPYQEVDPVTYDSDVIETEILDDGEEEGEEEQGE 437


HSP 2 Score: 126.3 bits (316), Expect = 1.2e-25
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0

Query: 39  KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 98
           KVL LSESFSGIKDVNL LAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54  KVLRLSESFSGIKDVNLQLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 113

Query: 99  AYVAS 104
           AYVAS
Sbjct: 114 AYVAS 118

BLAST of Carg21297 vs. ExPASy TrEMBL
Match: A0A6J1H3Q3 (methyltransferase-like protein 17, mitochondrial isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459357 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.2e-06
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0

Query: 130 EDLIKLNTQDIVPYQEVDPDTYDSDVMETETLDEDGDEGGEEQGD 175
           EDLIKLNTQ IVPYQEVDP TYDSDV+ETE LD+  +EG EEQG+
Sbjct: 339 EDLIKLNTQ-IVPYQEVDPVTYDSDVIETEILDDGEEEGEEEQGE 382


HSP 2 Score: 122.9 bits (307), Expect = 1.4e-24
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0

Query: 39  KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 98
           KVL LS+SFSGIKDVNL LAATTSKELVEDPLKSV QSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54  KVLRLSDSFSGIKDVNLQLAATTSKELVEDPLKSVAQSKRWKIKSCYGDIGFQYRDDETI 113

Query: 99  AYVAS 104
           AYVAS
Sbjct: 114 AYVAS 118

BLAST of Carg21297 vs. TAIR 10
Match: AT1G64600.1 (methyltransferases;copper ion binding )

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-13
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 0

Query: 39  KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 98
           KV  LSESF  IKD NL L  TT+K L  D + S+E +KRWKI++ YGD G QYRD ET 
Sbjct: 49  KVRQLSESFQEIKDTNLQLPETTAKSLA-DSMNSLE-TKRWKIQTVYGDSGLQYRDGETA 108

Query: 99  AYVAS 104
           AY+AS
Sbjct: 109 AYIAS 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7017034.11.5e-89100.00hypothetical protein SDJN02_22146, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6579574.12.0e-3898.84hypothetical protein SDJN03_24022, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022957993.12.5e-2596.92methyltransferase-like protein 17, mitochondrial isoform X1 [Cucurbita moschata]... [more]
XP_022957993.11.7e-0577.78methyltransferase-like protein 17, mitochondrial isoform X1 [Cucurbita moschata]... [more]
KAG7035505.11.7e-0577.78Methyltransferase-like protein 17, mitochondrial, partial [Cucurbita argyrosperm... [more]

Pages

Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E5171.2e-2596.92methyltransferase-like protein 17, mitochondrial isoform X1 OS=Momordica charant... [more]
A0A6J1E5177.5e-0780.00methyltransferase-like protein 17, mitochondrial isoform X1 OS=Momordica charant... [more]
A0A6J1E0U37.5e-0780.00methyltransferase-like protein 17, mitochondrial isoform X2 OS=Momordica charant... [more]
A0A6J1H1V38.2e-0677.78methyltransferase-like protein 17, mitochondrial isoform X1 OS=Cucurbita moschat... [more]
A0A6J1H3Q38.2e-0677.78methyltransferase-like protein 17, mitochondrial isoform X2 OS=Cucurbita moschat... [more]

Pages

Match NameE-valueIdentityDescription
AT1G64600.14.0e-1360.00methyltransferases;copper ion binding [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21297-RACarg21297-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
molecular_function GO:0008168 methyltransferase activity