Carg21160 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21160
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCryptochrome DASH
LocationCarg_Chr01: 10982787 .. 10984142 (+)
RNA-Seq ExpressionCarg21160
SyntenyCarg21160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGTTCCGGGCTAGAATCGGAGGAGATGGACCGGATTGCGGAACAATTGTTCCGGCGGTATTCGTCTCCTTCGTCTTCGGGTGTTAAAAGAGGAAAAGGAGTCGCCCTTGTTTGTTCAGAAATGACCTCCGTGTGCTGGACAATGAGGCTCTGTATAAGGCCTGGGTTTCGCCCGAGGCTGTGTTGCCGGTGTATTCCGCTGATCCAAGATCTTCTGGTTCTACCTGCTACTTCGGATTTCCTAGAACTGGAGGTTTATTTCTGAATTTATTCTTTACTTTTGTTACTGATAAAGATGATCGTGTAATTTGTTTGGAATTTATGCGTCTCTTGTTGAGCTCTGAACTGGTGGATTTTTTGTTCTATTTCTTGTTGTTGCCGATCATGAAGCGATTCTGTTCCATGTAATGCTCATAGCTCATTACTACTACTTGAGCGTAATGGAGCTCTTGCTCATCGGGTTTAGGTCACGTCTTCTCTTCTTGTAGTCCAAATTATTGAGGCGATTTTTGAAAAAATTCATGGCTATGTAGCAGTAAGTTATCAATTATGCTGGAAATGTCTTAAGCTATTTGTTGAATCGCTGTTTAAAATTATGATTTCAGCGTTTTGGAACTTATGCTTAGAGCAAGTGTTTCAACGATTATATAATTTTCTCCCTTTCTTGCAGCAATGAGAGCACAATTTATTGTTGAATGCTTGGCCTTAACTTGCTTATTCAATATGGGAAGCCTGAAGAAATTCTCCCTTCTCTTGCAAAAGCTCTCGGTGCCCACACAGTTGAGAAGATTTAATAGCCATCCTTGTATGTTTGAAGGATTGTTCTAATATGGTTATTATTATTACATCAAATTTTCTCTCTGTGAGTTGACAAACGATTTGTTTTCTTCAGGTTGTTAAGGGCATGAGGTTCATTGGGGGCGAGAAAGCAGGTCTCTCCAGAATTTATGAGTACACTTCTGGAAGAAGGTGAAAATTGGTGCTCCCTGTTTTTCTTGTTTTGATATTAACCAGACATTGTACAAGGAATGGATACCCAATGATGAGTTCAGCCGTTTGCATCTCTTTGCTGTTCTCCCCTTGCTATTTAGGATTTACTACGGATGAGGAAACAAGCAATCAATGGGATGTTAGAACCTGGCTACGCTACAAAATGTTGAGGATTATCGAAAGGAGTAGTCCCACGTTGGCCAGTCCGAAGAGATGAGCGTTACTTCAGTATCCCCAAGCAAGTAAGTGCAGATTTTCTTCTGAATGAATTTTGTTCATTATAAAAGTTTTGCCAAGCGAATAGCCGTTCTTAAGGTTCTAGACAATGCAAATCTATTTTCTAAGAACACATTTTTATTCT

mRNA sequence

ATGTCGAGTTCCGGGCTAGAATCGGAGGAGATGGACCGGATTGCGGAACAATTGTTCCGGCGGTATTCGTCTCCTTCGTCTTCGGGTGTTAAAAGAGGAAAAGGAGTCGCCCTTGTTTGTTCAGAAATGACCTCCGTGTGCTGGACAATGAGGCTCTGTATAAGGCCTGGGTTTCGCCCGAGGCTGTGTTGCCGGTGTATTCCGCTGATCCAAGATCTTCTGGTTCTACCTGCTACTTCGGATTTCCTAGAACTGGAGGTTGTTAAGGGCATGAGGTTCATTGGGGGCGAGAAAGCAGGTCTCTCCAGAATTTATGAGTACACTTCTGGAAGAAGGATTTACTACGGATGAGGAAACAAGCAATCAATGGGATGTTAGAACCTGGCTACGCTACAAAATGTTGAGGATTATCGAAAGGAGTAGTCCCACGTTGGCCAGTCCGAAGAGATGAGCGTTACTTCAGTATCCCCAAGCAAGTAAGTGCAGATTTTCTTCTGAATGAATTTTGTTCATTATAAAAGTTTTGCCAAGCGAATAGCCGTTCTTAAGGTTCTAGACAATGCAAATCTATTTTCTAAGAACACATTTTTATTCT

Coding sequence (CDS)

ATGTCGAGTTCCGGGCTAGAATCGGAGGAGATGGACCGGATTGCGGAACAATTGTTCCGGCGGTATTCGTCTCCTTCGTCTTCGGGTGTTAAAAGAGGAAAAGGAGTCGCCCTTGTTTGTTCAGAAATGACCTCCGTGTGCTGGACAATGAGGCTCTGTATAAGGCCTGGGTTTCGCCCGAGGCTGTGTTGCCGGTGTATTCCGCTGATCCAAGATCTTCTGGTTCTACCTGCTACTTCGGATTTCCTAGAACTGGAGGTTGTTAAGGGCATGAGGTTCATTGGGGGCGAGAAAGCAGGTCTCTCCAGAATTTATGAGTACACTTCTGGAAGAAGGATTTACTACGGATGA

Protein sequence

MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGRRIYYG
Homology
[Close]
BLAST of Carg21160 vs. NCBI nr
Match: KAG7037552.1 (hypothetical protein SDJN02_01180, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.3 bits (599), Expect = 2.6e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRP 60
           MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRP
Sbjct: 1   MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRP 60

Query: 61  RLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGRRIYYG 117
           RLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGRRIYYG
Sbjct: 61  RLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGRRIYYG 116

[Close]
BLAST of Carg21160 vs. NCBI nr
Match: XP_022941136.1 (uncharacterized protein LOC111446523 isoform X2 [Cucurbita moschata])

HSP 1 Score: 218.8 bits (556), Expect = 2.5e-53
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 11  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 70
           MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI
Sbjct: 1   MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 60

Query: 71  QDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGRRIYYG 117
           QDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGRRIYYG
Sbjct: 61  QDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGRRIYYG 106

[Close]
BLAST of Carg21160 vs. NCBI nr
Match: XP_022941135.1 (uncharacterized protein LOC111446523 isoform X1 [Cucurbita moschata])

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 106/119 (89.08%), Postives = 106/119 (89.08%), Query Frame = 0 

Query: 11  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 70
           MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI
Sbjct: 1   MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 60

Query: 71  QDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGR-------------RIYYG 117
           QDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGR             RIYYG
Sbjct: 61  QDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGRSRLHLFAVLPLLFRIYYG 119

[Close]
BLAST of Carg21160 vs. NCBI nr
Match: XP_022982494.1 (cryptochrome DASH, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 60/133 (45.11%), Postives = 68/133 (51.13%), Query Frame = 0 

Query: 11  MDRIAEQLFRRYSSPSSSGVKRGKGVALVC---------SEMTSVCWTMRLCIRP----- 70
           MDRIAEQLFRRYSSPSSSGVKRGKG+ALV          SE     W     + P     
Sbjct: 1   MDRIAEQLFRRYSSPSSSGVKRGKGIALVWFRNGLRVLDSEALYKAWVSPEAVLPVYSAD 60

Query: 71  ----------GF------RPRLCCRCIPLI------QDLLVLPATSDFLELE-VVKGMRF 107
                     GF      R +    C+ L       +   +LP+ +  L    VVKGMRF
Sbjct: 61  PRSFGFTCYFGFPKTGAMRAQFIVECLALTCLFNNGKPEEILPSLAKALGAHTVVKGMRF 120

[Close]
BLAST of Carg21160 vs. NCBI nr
Match: XP_022142772.1 (cryptochrome DASH, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 7.1e-08
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 5  GLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALV 40
          GLESEEMDRIAEQ+FRRYSSPSSSG+KRGKGVA+V
Sbjct: 64 GLESEEMDRIAEQMFRRYSSPSSSGIKRGKGVAIV 98

[Close]
BLAST of Carg21160 vs. ExPASy TrEMBL
Match: A0A6J1FKA6 (uncharacterized protein LOC111446523 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446523 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 11  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 70
           MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI
Sbjct: 1   MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 60

Query: 71  QDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGRRIYYG 117
           QDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGRRIYYG
Sbjct: 61  QDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGRRIYYG 106

[Close]
BLAST of Carg21160 vs. ExPASy TrEMBL
Match: A0A6J1FSP3 (uncharacterized protein LOC111446523 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446523 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.3e-51
Identity = 106/119 (89.08%), Postives = 106/119 (89.08%), Query Frame = 0 

Query: 11  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 70
           MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI
Sbjct: 1   MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 60

Query: 71  QDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGR-------------RIYYG 117
           QDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGR             RIYYG
Sbjct: 61  QDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSGRSRLHLFAVLPLLFRIYYG 119

[Close]
BLAST of Carg21160 vs. ExPASy TrEMBL
Match: A0A6J1J4Q9 (cryptochrome DASH, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111481298 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.7e-12
Identity = 60/133 (45.11%), Postives = 68/133 (51.13%), Query Frame = 0 

Query: 11  MDRIAEQLFRRYSSPSSSGVKRGKGVALVC---------SEMTSVCWTMRLCIRP----- 70
           MDRIAEQLFRRYSSPSSSGVKRGKG+ALV          SE     W     + P     
Sbjct: 1   MDRIAEQLFRRYSSPSSSGVKRGKGIALVWFRNGLRVLDSEALYKAWVSPEAVLPVYSAD 60

Query: 71  ----------GF------RPRLCCRCIPLI------QDLLVLPATSDFLELE-VVKGMRF 107
                     GF      R +    C+ L       +   +LP+ +  L    VVKGMRF
Sbjct: 61  PRSFGFTCYFGFPKTGAMRAQFIVECLALTCLFNNGKPEEILPSLAKALGAHTVVKGMRF 120

[Close]
BLAST of Carg21160 vs. ExPASy TrEMBL
Match: A0A6J1CNT8 (Cryptochrome DASH OS=Momordica charantia OX=3673 GN=LOC111012808 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.4e-08
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 5  GLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALV 40
          GLESEEMDRIAEQ+FRRYSSPSSSG+KRGKGVA+V
Sbjct: 64 GLESEEMDRIAEQMFRRYSSPSSSGIKRGKGVAIV 98

[Close]
BLAST of Carg21160 vs. ExPASy TrEMBL
Match: A0A6J1F6T7 (Cryptochrome DASH OS=Cucurbita moschata OX=3662 GN=LOC111442648 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.4e-08
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 50 MRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE 87
          MR CIRPGFR RLCCRCI LI+D LVLPATSDFL+LE
Sbjct: 1  MRPCIRPGFRQRLCCRCIALIRDFLVLPATSDFLKLE 37

The following BLAST results are available for this feature:
BLAST of Carg21160 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037552.12.6e-58100.00hypothetical protein SDJN02_01180, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022941136.12.5e-53100.00uncharacterized protein LOC111446523 isoform X2 [Cucurbita moschata][more]
XP_022941135.11.5e-5089.08uncharacterized protein LOC111446523 isoform X1 [Cucurbita moschata][more]
XP_022982494.11.4e-1145.11cryptochrome DASH, chloroplastic/mitochondrial-like [Cucurbita maxima][more]
XP_022142772.17.1e-0891.43cryptochrome DASH, chloroplastic/mitochondrial [Momordica charantia][more]
BLAST of Carg21160 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FKA61.2e-53100.00uncharacterized protein LOC111446523 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1FSP37.3e-5189.08uncharacterized protein LOC111446523 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1J4Q96.7e-1245.11cryptochrome DASH, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 ... [more]
A0A6J1CNT83.4e-0891.43Cryptochrome DASH OS=Momordica charantia OX=3673 GN=LOC111012808 PE=3 SV=1[more]
A0A6J1F6T73.4e-0883.78Cryptochrome DASH OS=Cucurbita moschata OX=3662 GN=LOC111442648 PE=3 SV=1[more]
BLAST of Carg21160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21160-RACarg21160-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000719 photoreactive repair
biological_process GO:0018298 protein-chromophore linkage
molecular_function GO:0003677 DNA binding
molecular_function GO:0003913 DNA photolyase activity
molecular_function GO:0071949 FAD binding