Carg20626 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20626
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-CH-type domain-containing protein
Location	Carg_Chr13: 525705 .. 528088 (+)
RNA-Seq Expression	Carg20626
Synteny	Carg20626

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCTCTCTCTTGATTAATCTTTGAAGCTGGCTGAGCGTTTGATTTCCTGGATGTTATGAAAATTTCGTGTTCTTCTTTGTGGTAAGTTTTCCTAATTTTTGATTTCGTGTTCAAATTGTACGTTTTGAAATGTTTATGGAAACTGTTCATGATTAGAGTAAAAAGGAAGGGGGGAAAATGGGTCTGTTCATCTTGCTACTGTTTGTGTTAATACATATCTTTTGGTTTTCGTTAGTCGAATGCGATTTCCCCATCTGGGTTTCTCAGGATGTCCGCAGTTCTAGCTCCTCGTGGTGACCCGATCCTTGCAGATCCGAGTTCCCTGCCTTATCGCGATGCTCGTTCAGCAGCTGGTAGCAGCAGTAGCAGCAGTGACCTGTCGGTTCTTGATGATTCCGATGACCAGTCGTGGCACTCGGTTTTCGACTCCACGGCTTGGGGATCTCATGGCGACGGCCTGTTTTCCGGCGAGATTGAGGGCGTTCCGGACGCTGAGACGGGTGGTTTCATCTCGGGAAGCTCGTCGGAAGTGGATTTGGAGAGTGGGGATTTGGAGGTGAAGGTGCATTTGGGGAAGATCGAAAGGGATTGCAGAATTTGTCACTTGGAACTGGAAAGCGGCGGCGGAAGAGATCATAATGATACTCCGATTCTGCTTGGTTGTTGCTGTCGTGGTGATTTGGGTACGGCTCACAAGCATTGTGCTGAGACTTGGTTCAAAATCAAAGGAAATACGTAAGTAATAAACTCTCATTTGTTCTTAATCTTTTGATCATCAATGGTTTTGTTCAAGTTTTGCCTCTTGCTAGCAGTTTACATGGAAATTTATCGAAAATCTTAGCTAATTTGTTGGATCCTCTGCTTCTTTCTGAGTTTTCTGCCATGAATCTTCCCCAAATAGTTAATCTCTATCTTGAACTCAGTAAATTCATTCAGATCTTCTGCAGTCAGTATTTGGTGTTCTTCATAGTTCTTACTGAAGTATTCAGCTCAATTTGATTGGATTATTCGAATTCTTGTTTTGAAACCTTTAATCAACTAGATTCTGTGTGTAAAGCTTTACTATTGTCTCATGAGTATGCAAGGTGTTCTTCAGACATAAACAAGGTAAAAACTGAAGTGACTCCTCGTATGTTTGAGCATGACTGTTCTTGAGTATAGAATTATCTTTTCTGTATATCTTGAATGAATCAGATTGTTTAACACTCTAATAGTTACTTTCGGTGTGAGAACCGACCTACATCGGTTGGAGAGGGGAACGGGAAACGAAACATTCTTTATAAGGGTGTAGAAACATTTCTATAATATACATATTTTAAAACCGTGAGGCTTACGACAGCAATGCATAACGAGCCAAAGCAGACAAAACCTGCTAGCAGTGAGCTGTTATAAATAGTATTAGAGATAGACACCGAGTAGTATGTCAGCAAGGACGCTGGCCCCCAAAGAGGGTGGATTGTGAGATCTCACATCGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACTTATCCCTAACAGACGCGGTTTAAAATTGTGAGACTGACAACATAACGGGTCAAAGCTAATAATACTGCTAGCAGTGAGCTTAGGCTGTTACAACTAGTATCAGTGCTAGACACCGAGCAATGTGTTAGCAAGGATGCTAAGTTTCCAAGGGGGTAGATTGTGAGATCTCACATTGGTTGGAGAAGGGAACGAAACATTTCTTTATAAGGGTGTAGAAACTCTTCCTTAACAAACGTGTTTTAAAAACTGCACAAAATGAGTATTAACGTTATCGTTATGAGTATTAACTTGACAAGCAATATGATATTTTTCTTGCAGAATTTGTGAGATATGTGGAGCAACTGCACAAAATGTTGCAAGTCAACAAATAAATGAACCGAGCAATGCGGCTGCTGCTGCTGCTGCTGCAGTAGCATCCTCAGCTATGACAGCACCCCTAACTCTGGTCGAGACTCGAACGATCTTTCACGGTCGACGCATTATGAACTTTCTGCTTGCGTGCATGCTCCTTGCATTTGCAATGTCCTGGCTTTTTCACTTCAAGTTAATGTCATAGGCTTAGGAAGATCGCCAGTAGAAGAAAACTGGGGGAATTCCAAGTTCTTTAGGCCTTTGTACATATACTTACACTTTGTTTAGTTAATTTTGATGAGGTTGGTTTCATTAGAGGCATTCCTTAGTTGTGGTTTTGGTGATTGAATAAACAGGCAACTCCACAGGAACAGACAATTCGCACAAGAGGATTTGATCAAAAAGTCGAAAATTCAAAAATTCAAAGAGATCGAGAGATTTCTCACATAAACATCCAATCAAATTCGATCATACTTGTTTCTTTTACTTTTCACATGGATCT

mRNA sequence

TCTCTCTCTCTCTCTCTCTCTCTTGATTAATCTTTGAAGCTGGCTGAGCGTTTGATTTCCTGGATGTTATGAAAATTTCGTGTTCTTCTTTGTGTCGAATGCGATTTCCCCATCTGGGTTTCTCAGGATGTCCGCAGTTCTAGCTCCTCGTGGTGACCCGATCCTTGCAGATCCGAGTTCCCTGCCTTATCGCGATGCTCGTTCAGCAGCTGGTAGCAGCAGTAGCAGCAGTGACCTGTCGGTTCTTGATGATTCCGATGACCAGTCGTGGCACTCGGTTTTCGACTCCACGGCTTGGGGATCTCATGGCGACGGCCTGTTTTCCGGCGAGATTGAGGGCGTTCCGGACGCTGAGACGGGTGGTTTCATCTCGGGAAGCTCGTCGGAAGTGGATTTGGAGAGTGGGGATTTGGAGGTGAAGGTGCATTTGGGGAAGATCGAAAGGGATTGCAGAATTTGTCACTTGGAACTGGAAAGCGGCGGCGGAAGAGATCATAATGATACTCCGATTCTGCTTGGTTGTTGCTGTCGTGGTGATTTGGGTACGGCTCACAAGCATTGTGCTGAGACTTGGTTCAAAATCAAAGGAAATACAATTTGTGAGATATGTGGAGCAACTGCACAAAATGTTGCAAGTCAACAAATAAATGAACCGAGCAATGCGGCTGCTGCTGCTGCTGCTGCAGTAGCATCCTCAGCTATGACAGCACCCCTAACTCTGGTCGAGACTCGAACGATCTTTCACGGTCGACGCATTATGAACTTTCTGCTTGCGTGCATGCTCCTTGCATTTGCAATGTCCTGGCTTTTTCACTTCAAGTTAATGTCATAGGCTTAGGAAGATCGCCAGTAGAAGAAAACTGGGGGAATTCCAAGTTCTTTAGGCCTTTGTACATATACTTACACTTTGTTTAGTTAATTTTGATGAGGTTGGTTTCATTAGAGGCATTCCTTAGTTGTGGTTTTGGTGATTGAATAAACAGGCAACTCCACAGGAACAGACAATTCGCACAAGAGGATTTGATCAAAAAGTCGAAAATTCAAAAATTCAAAGAGATCGAGAGATTTCTCACATAAACATCCAATCAAATTCGATCATACTTGTTTCTTTTACTTTTCACATGGATCT

Coding sequence (CDS)

ATGTCCGCAGTTCTAGCTCCTCGTGGTGACCCGATCCTTGCAGATCCGAGTTCCCTGCCTTATCGCGATGCTCGTTCAGCAGCTGGTAGCAGCAGTAGCAGCAGTGACCTGTCGGTTCTTGATGATTCCGATGACCAGTCGTGGCACTCGGTTTTCGACTCCACGGCTTGGGGATCTCATGGCGACGGCCTGTTTTCCGGCGAGATTGAGGGCGTTCCGGACGCTGAGACGGGTGGTTTCATCTCGGGAAGCTCGTCGGAAGTGGATTTGGAGAGTGGGGATTTGGAGGTGAAGGTGCATTTGGGGAAGATCGAAAGGGATTGCAGAATTTGTCACTTGGAACTGGAAAGCGGCGGCGGAAGAGATCATAATGATACTCCGATTCTGCTTGGTTGTTGCTGTCGTGGTGATTTGGGTACGGCTCACAAGCATTGTGCTGAGACTTGGTTCAAAATCAAAGGAAATACAATTTGTGAGATATGTGGAGCAACTGCACAAAATGTTGCAAGTCAACAAATAAATGAACCGAGCAATGCGGCTGCTGCTGCTGCTGCTGCAGTAGCATCCTCAGCTATGACAGCACCCCTAACTCTGGTCGAGACTCGAACGATCTTTCACGGTCGACGCATTATGAACTTTCTGCTTGCGTGCATGCTCCTTGCATTTGCAATGTCCTGGCTTTTTCACTTCAAGTTAATGTCATAG

Protein sequence

MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSHGDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGGRDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAAAAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS

Homology

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BLAST of Carg20626 vs. NCBI nr
Match: XP_023519518.1 (uncharacterized protein LOC111782909 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 458.8 bits (1179), Expect = 2.9e-125
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 60
           MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH
Sbjct: 65  MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 124

Query: 61  GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 120
           GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG
Sbjct: 125 GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 184

Query: 121 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA 180
           RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA
Sbjct: 185 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA 244

Query: 181 AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 235
           AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 245 AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 298

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BLAST of Carg20626 vs. NCBI nr
Match: XP_023519519.1 (uncharacterized protein LOC111782909 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 458.8 bits (1179), Expect = 2.9e-125
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 60
           MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH
Sbjct: 10  MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 69

Query: 61  GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 120
           GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG
Sbjct: 70  GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 129

Query: 121 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA 180
           RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA
Sbjct: 130 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA 189

Query: 181 AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 235
           AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 190 AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 243

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BLAST of Carg20626 vs. NCBI nr
Match: XP_023522382.1 (uncharacterized protein LOC111786305 [Cucurbita pepo subsp. pepo] >KAG7019161.1 hypothetical protein SDJN02_18119 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 458.8 bits (1179), Expect = 2.9e-125
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 60
           MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH
Sbjct: 1   MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 60

Query: 61  GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 120
           GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG
Sbjct: 61  GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 120

Query: 121 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA 180
           RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA
Sbjct: 121 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA 180

Query: 181 AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 235
           AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 181 AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 234

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BLAST of Carg20626 vs. NCBI nr
Match: XP_022964853.1 (uncharacterized protein LOC111464834 [Cucurbita moschata])

HSP 1 Score: 453.0 bits (1164), Expect = 1.6e-123
Identity = 233/234 (99.57%), Postives = 233/234 (99.57%), Query Frame = 0


Query: 1   MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 60
           MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH
Sbjct: 112 MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 171

Query: 61  GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 120
           GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG
Sbjct: 172 GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 231

Query: 121 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA 180
           RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSN A
Sbjct: 232 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSN-A 291

Query: 181 AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 235
           AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 292 AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 344

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BLAST of Carg20626 vs. NCBI nr
Match: XP_022970586.1 (uncharacterized protein LOC111469521 [Cucurbita maxima])

HSP 1 Score: 443.7 bits (1140), Expect = 9.6e-121
Identity = 227/234 (97.01%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 60
           MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH
Sbjct: 1   MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 60

Query: 61  GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 120
           GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG
Sbjct: 61  GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 120

Query: 121 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA 180
           RD+NDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGA AQNVASQQINEPSN  
Sbjct: 121 RDYNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGAAAQNVASQQINEPSN-- 180

Query: 181 AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 235
             AAAAVASSAMTAPLTL+ETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 181 -LAAAAVASSAMTAPLTLIETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 231

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BLAST of Carg20626 vs. ExPASy TrEMBL
Match: A0A6J1HM49 (uncharacterized protein LOC111464834 OS=Cucurbita moschata OX=3662 GN=LOC111464834 PE=4 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 7.7e-124
Identity = 233/234 (99.57%), Postives = 233/234 (99.57%), Query Frame = 0


Query: 1   MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 60
           MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH
Sbjct: 112 MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 171

Query: 61  GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 120
           GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG
Sbjct: 172 GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 231

Query: 121 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA 180
           RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSN A
Sbjct: 232 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSN-A 291

Query: 181 AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 235
           AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 292 AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 344

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BLAST of Carg20626 vs. ExPASy TrEMBL
Match: A0A6J1I103 (uncharacterized protein LOC111469521 OS=Cucurbita maxima OX=3661 GN=LOC111469521 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 4.7e-121
Identity = 227/234 (97.01%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 60
           MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH
Sbjct: 1   MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 60

Query: 61  GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 120
           GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG
Sbjct: 61  GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 120

Query: 121 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA 180
           RD+NDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGA AQNVASQQINEPSN  
Sbjct: 121 RDYNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGAAAQNVASQQINEPSN-- 180

Query: 181 AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 235
             AAAAVASSAMTAPLTL+ETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 181 -LAAAAVASSAMTAPLTLIETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 231

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BLAST of Carg20626 vs. ExPASy TrEMBL
Match: A0A0A0M0P0 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527920 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.9e-106
Identity = 207/234 (88.46%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 1   MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 60
           MSAV APRGD   A+PSSLP+RDARSAAG   S SD+SVLDDSDDQSWHSVFDSTAWGSH
Sbjct: 50  MSAVEAPRGDSDPANPSSLPFRDARSAAG---SCSDMSVLDDSDDQSWHSVFDSTAWGSH 109

Query: 61  GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 120
           G+G FSGEIEGVPDAE G FIS SSSEVDLESGDLEVKVHLGKIERDCRICHLELES GG
Sbjct: 110 GEGQFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGG 169

Query: 121 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA 180
           RD++DTPI LGCCCRGDLGTAHK CAETWFKIKGNTICEICGATAQNVASQQINEPSN  
Sbjct: 170 RDNSDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSN-- 229

Query: 181 AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 235
            A A AVASSA+TAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 230 -AVATAVASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 277

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BLAST of Carg20626 vs. ExPASy TrEMBL
Match: A0A5D3BFF6 (E3 ubiquitin-protein ligase MARCH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001610 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 9.4e-106
Identity = 207/234 (88.46%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 1   MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 60
           MSAV APRGD   A+PSSLP+RDARSAAG   S SD+SVLDDSDDQSWHSVFDSTAWGSH
Sbjct: 49  MSAVEAPRGDSDPANPSSLPFRDARSAAG---SCSDMSVLDDSDDQSWHSVFDSTAWGSH 108

Query: 61  GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 120
           G+G FSGEIEGV DAE G FIS SSSEVDLESGDLEVKVHLGKIERDCRICHLELES GG
Sbjct: 109 GEGQFSGEIEGVLDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGG 168

Query: 121 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA 180
           RD++DTPI LGCCCRGDLGTAHK CAETWFKIKGNTICEICGATAQNVASQQINEPSN  
Sbjct: 169 RDNSDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSN-- 228

Query: 181 AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 235
            A AAAVASSA+TAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 229 -AVAAAVASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 276

[Close]

BLAST of Carg20626 vs. ExPASy TrEMBL
Match: A0A1S3C517 (uncharacterized protein LOC103497107 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497107 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 9.4e-106
Identity = 207/234 (88.46%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 1   MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 60
           MSAV APRGD   A+PSSLP+RDARSAAG   S SD+SVLDDSDDQSWHSVFDSTAWGSH
Sbjct: 1   MSAVEAPRGDSDPANPSSLPFRDARSAAG---SCSDMSVLDDSDDQSWHSVFDSTAWGSH 60

Query: 61  GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 120
           G+G FSGEIEGV DAE G FIS SSSEVDLESGDLEVKVHLGKIERDCRICHLELES GG
Sbjct: 61  GEGQFSGEIEGVLDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGG 120

Query: 121 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA 180
           RD++DTPI LGCCCRGDLGTAHK CAETWFKIKGNTICEICGATAQNVASQQINEPSN  
Sbjct: 121 RDNSDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSN-- 180

Query: 181 AAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 235
            A AAAVASSA+TAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 181 -AVAAAVASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 228

[Close]

BLAST of Carg20626 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 142.9 bits (359), Expect = 3.3e-34
Identity = 82/172 (47.67%), Postives = 100/172 (58.14%), Query Frame = 0


Query: 63  GLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGGRD 122
           G    E E V D E     S  S E+DLE G  E  VHL + ERDCRICH+ L++     
Sbjct: 34  GAVEKEEEIVKDEERRSNASVCSVEIDLELGLPEKVVHLSQSERDCRICHMSLDA--ANL 93

Query: 123 HNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAAAA 182
            +  PI LGC C+ DL  AHKHCAETWFKIKGN ICE+CG+ A NV      E   +   
Sbjct: 94  ESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSIAGNVVGSVEVESEESRNE 153

Query: 183 AAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 235
           A      +  T+   LVE R+ + G R +NFLLACM+ AF +SWLFHF + S
Sbjct: 154 ANGVENLTLRTSGPRLVEGRSFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 203

[Close]

BLAST of Carg20626 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-31
Identity = 86/200 (43.00%), Postives = 103/200 (51.50%), Query Frame = 0


Query: 84  SSSEVDLESGDL---EVKVHLG------------------KIERDCRICHLELESGGGRD 143
           S S+VDLESG +   E ++H G                  K  RDCRICHL LE+    +
Sbjct: 36  SLSQVDLESGGVPAPEKQLHSGGKKRRTRRRKRRKKKKKKKGGRDCRICHLPLETNKEAE 95

Query: 144 HND-----------------------------TPILLGCCCRGDLGTAHKHCAETWFKIK 203
             D                              P+ LGC C+GDLG AH  CAETWFKIK
Sbjct: 96  DEDEEEEDDSDDDEDEEDEEEEEEEEEEEYYGLPLQLGCSCKGDLGVAHSKCAETWFKIK 155

Query: 204 GNTICEICGATAQNVASQQINEPSNAAAAAAAAVASSAMTAPLTLVETRTIFHGRRIMNF 234
           GN  CEICGA A NVA +Q N  S A+  + AA   S     LT  E R I+HGR +MNF
Sbjct: 156 GNMTCEICGAMALNVAGEQSNPESTASTHSQAAAGQS-----LTQTEPRGIWHGRPVMNF 215

[Close]

BLAST of Carg20626 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-24
Identity = 78/208 (37.50%), Postives = 108/208 (51.92%), Query Frame = 0


Query: 31  SSSSSDLSVL--DDSDDQSWHSVFDSTAWGSHGDGLFSGEIEGVPDAETGGFISGSSSEV 90
           S   SD+SV   D  D  S +S F ST  GS+       E EG    +    +S SSSE+
Sbjct: 19  SLDGSDVSVYYSDGEDVMSCYSYFYSTTGGSY-------EYEGDQSRKVSSVMSPSSSEI 78

Query: 91  DLESGDLEVKVHLGKIERDCRICHLELESGGGRDHNDTPILLGCCCRGDLGTAHKHCAET 150
           D +             E+DCRICHL +E+ GG       I LGC C+ DL  AH+ CAET
Sbjct: 79  DDDDA-------TAPPEKDCRICHLGVETSGG-----GAIELGCSCKDDLAVAHRQCAET 138

Query: 151 WFKIKGNTICEICGATAQNV--ASQQINEPSNAAAAAAAAVASSAMTAPLTLVETRTIFH 210
           WFKIKG+  CEIC + A+NV  A++ +               ++      T+VE R  + 
Sbjct: 139 WFKIKGDKTCEICQSVARNVGGANEMVGSTMEERELRNGEETAAGEGGGATVVENR--WQ 198

Query: 211 GRRIMNFLLACMLLAFAMSWLFHFKLMS 235
            +R++N +LACM+  F +SW+FHF + S
Sbjct: 199 PQRVVNLVLACMVFGFFISWIFHFHVSS 205

[Close]

BLAST of Carg20626 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 4.4e-23
Identity = 75/205 (36.59%), Postives = 98/205 (47.80%), Query Frame = 0


Query: 35  SDLSVLDDSD---DQSWHSVFDSTAWGSHGDGLFSGEIEGVPDAETGGFISGSSSEVDLE 94
           SD+S  D S    D  +HS   S          F GE E   D      +   +    + 
Sbjct: 23  SDVSGEDSSSCDYDYDFHSAVRS----------FCGEFEIADD------LDDETDTESVA 82

Query: 95  SGDLEVKVHLGKIERDCRICHLELESGGGRDHNDTPILLGCCCRGDLGTAHKHCAETWFK 154
           SG +      G  E+DCRICHL LES   R     P++LGC C+ DLG  HK CA+TWFK
Sbjct: 83  SGSIR-----GSPEKDCRICHLGLES--SRHECGDPMVLGCSCKDDLGYVHKQCADTWFK 142

Query: 155 IKGNTICEICGATAQNV--ASQQINEPSNAAAAAAAAVASSAMTAPLTLVETRTIFHGRR 214
           IKGN  CEIC + AQN      +I + +           ++      +  + R +  G R
Sbjct: 143 IKGNKTCEICRSIAQNFFKVDNEIGQTTVETNVDDVEAGNTPTMVATSDSDDRRLCRGNR 202

Query: 215 IMNFLLACMLLAFAMSWLFHFKLMS 235
            +NFLL CM+ AF +SW FHF L S
Sbjct: 203 FLNFLLTCMVCAFVISWFFHFNLPS 204

[Close]

BLAST of Carg20626 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-15
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 105 ERDCRICHL---ELESGGGRDHNDTP--ILLGCCCRGDLGTAHKHCAETWFKIKGNTICE 164
           ER CRICH    +     G D + +P  I +GC C+ +LG AH HCAE WFK++GN++CE
Sbjct: 99  ERICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCE 158

Query: 165 ICGATAQNV 169
           ICG TA+NV
Sbjct: 159 ICGCTAKNV 167

The following BLAST results are available for this feature:

BLAST of Carg20626 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519518.1	2.9e-125	100.00	uncharacterized protein LOC111782909 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023519519.1	2.9e-125	100.00	uncharacterized protein LOC111782909 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023522382.1	2.9e-125	100.00	uncharacterized protein LOC111786305 [Cucurbita pepo subsp. pepo] >KAG7019161.1 ...	[more]
XP_022964853.1	1.6e-123	99.57	uncharacterized protein LOC111464834 [Cucurbita moschata]	[more]
XP_022970586.1	9.6e-121	97.01	uncharacterized protein LOC111469521 [Cucurbita maxima]	[more]

BLAST of Carg20626 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg20626 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HM49	7.7e-124	99.57	uncharacterized protein LOC111464834 OS=Cucurbita moschata OX=3662 GN=LOC1114648...	[more]
A0A6J1I103	4.7e-121	97.01	uncharacterized protein LOC111469521 OS=Cucurbita maxima OX=3661 GN=LOC111469521...	[more]
A0A0A0M0P0	1.9e-106	88.46	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G52792...	[more]
A0A5D3BFF6	9.4e-106	88.46	E3 ubiquitin-protein ligase MARCH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C517	9.4e-106	88.46	uncharacterized protein LOC103497107 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Carg20626 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05830.1	3.3e-34	47.67	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	2.0e-31	43.00	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	2.3e-24	37.50	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	4.4e-23	36.59	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G34200.1	1.2e-15	52.17	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 107..162 e-value: 5.7E-15 score: 65.7
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 108..161 e-value: 4.8E-9 score: 36.2
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 100..168 score: 18.949591
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 98..173 e-value: 3.1E-15 score: 57.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..41
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 30..232
None	No IPR available	PANTHER	PTHR46214:SF5	OS01G0850200 PROTEIN	coord: 30..232
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 108..162 e-value: 7.22434E-13 score: 59.2632
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 105..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20626-RA	Carg20626-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding