Carg20420 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20420
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCLAVATA3/ESR (CLE)-related protein 45
LocationCarg_Chr01: 2473995 .. 2474234 (+)
RNA-Seq ExpressionCarg20420
SyntenyCarg20420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTCAGTATACACAGAGTACTTCTTGTCCTTCTCATGTGTGTTGTGGCACTTTTAGCAGTTAAACCAGAGCAGGCTTGTGGTTTGACAAGCATGGACCTTGCTCTCAGACCAATCCGCCACGTTCTTGAAGATCCAAGGGACAGGAATTCACGACCACGAAACAAGTTCGATCCGAATCGATCGAGCAAAAGACGGGTTCGACGAGGATCGGATCCTATCCACAACAGGTCTTAG

mRNA sequence

ATGGTTTTCAGTATACACAGAGTACTTCTTGTCCTTCTCATGTGTGTTGTGGCACTTTTAGCAGTTAAACCAGAGCAGGCTTGTGGTTTGACAAGCATGGACCTTGCTCTCAGACCAATCCGCCACGTTCTTGAAGATCCAAGGGACAGGAATTCACGACCACGAAACAAGTTCGATCCGAATCGATCGAGCAAAAGACGGGTTCGACGAGGATCGGATCCTATCCACAACAGGTCTTAG

Coding sequence (CDS)

ATGGTTTTCAGTATACACAGAGTACTTCTTGTCCTTCTCATGTGTGTTGTGGCACTTTTAGCAGTTAAACCAGAGCAGGCTTGTGGTTTGACAAGCATGGACCTTGCTCTCAGACCAATCCGCCACGTTCTTGAAGATCCAAGGGACAGGAATTCACGACCACGAAACAAGTTCGATCCGAATCGATCGAGCAAAAGACGGGTTCGACGAGGATCGGATCCTATCCACAACAGGTCTTAG

Protein sequence

MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVLEDPRDRNSRPRNKFDPNRSSKRRVRRGSDPIHNRS
Homology
BLAST of Carg20420 vs. NCBI nr
Match: KAG7036811.1 (hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.3 bits (373), Expect = 2.8e-32
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVLEDPRDRNSRPRNKFDP 60
          MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVLEDPRDRNSRPRNKFDP
Sbjct: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVLEDPRDRNSRPRNKFDP 60

Query: 61 NRSSKRRVRRGSDPIHNRS 80
          NRSSKRRVRRGSDPIHNRS
Sbjct: 61 NRSSKRRVRRGSDPIHNRS 79

BLAST of Carg20420 vs. NCBI nr
Match: KAG6607120.1 (hypothetical protein SDJN03_00462, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.1 bits (370), Expect = 6.3e-32
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVLEDPRDRNSRPRNKFDP 60
          MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVLEDPRDRNSRPRNKFDP
Sbjct: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVLEDPRDRNSRPRNKFDP 60

Query: 61 NRSSKRRVRRGSDPIHNRS 80
          NRSSKRRVRRGSDPIHNR+
Sbjct: 61 NRSSKRRVRRGSDPIHNRT 79

BLAST of Carg20420 vs. NCBI nr
Match: KAA0032271.1 (CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 7.2e-20
Identity = 68/87 (78.16%), Postives = 72/87 (82.76%), Query Frame = 0

Query: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVL-EDPR------DRNSR 60
          MVFSIHRVL+VLLMC VALLAVKPEQAC L S+DLALRP RH+L ED R       RNS 
Sbjct: 1  MVFSIHRVLIVLLMC-VALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSL 60

Query: 61 PR-NKFDPNRSSKRRVRRGSDPIHNRS 80
          P+ NKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 86

BLAST of Carg20420 vs. NCBI nr
Match: KGN61380.1 (hypothetical protein Csa_006322 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 65/87 (74.71%), Postives = 70/87 (80.46%), Query Frame = 0

Query: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVL-------EDPRDRNSR 60
          M FSIHRVL+VLLMCVVALLAVK +QAC L S+DLALRP RH+L       E    RNS+
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PR-NKFDPNRSSKRRVRRGSDPIHNRS 80
          PR NKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

BLAST of Carg20420 vs. NCBI nr
Match: KAG7029950.1 (hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.4 bits (259), Expect = 4.7e-19
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 0

Query: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVL-EDPR------DRNSR 60
          MVFSIHRVL+VLLMCVVALLAV+P+QAC + S+DLALR  RH+L ED R       RNS 
Sbjct: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60

Query: 61 PRN-KFDPNRSSKRRVRRGSDPIHNRS 80
          PRN KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87

BLAST of Carg20420 vs. ExPASy TrEMBL
Match: A0A5A7SRV2 (CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00220 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.5e-20
Identity = 68/87 (78.16%), Postives = 72/87 (82.76%), Query Frame = 0

Query: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVL-EDPR------DRNSR 60
          MVFSIHRVL+VLLMC VALLAVKPEQAC L S+DLALRP RH+L ED R       RNS 
Sbjct: 1  MVFSIHRVLIVLLMC-VALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSL 60

Query: 61 PR-NKFDPNRSSKRRVRRGSDPIHNRS 80
          P+ NKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 86

BLAST of Carg20420 vs. ExPASy TrEMBL
Match: A0A0A0LHH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.9e-20
Identity = 65/87 (74.71%), Postives = 70/87 (80.46%), Query Frame = 0

Query: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVL-------EDPRDRNSR 60
          M FSIHRVL+VLLMCVVALLAVK +QAC L S+DLALRP RH+L       E    RNS+
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PR-NKFDPNRSSKRRVRRGSDPIHNRS 80
          PR NKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

BLAST of Carg20420 vs. ExPASy TrEMBL
Match: A0A067GTG0 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-07
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 0

Query: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRH-----------------V 60
          MVF   RV L+LL+C+  LL+V+P++  GL S+DL LR  +H                 V
Sbjct: 1  MVFFARRV-LILLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 LEDPRDRNSRPRNKFDPNRSSKRRVRRGSDPIHNRS 80
            +   ++++  NKFDPN+SSKRRVRRGSDPIHNRS
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

BLAST of Carg20420 vs. ExPASy TrEMBL
Match: V4VH78 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033178mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-07
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 0

Query: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRH-----------------V 60
          MVF   RV L+LL+C+  LL+V+P++  GL S+DL LR  +H                 V
Sbjct: 1  MVFFARRV-LILLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 LEDPRDRNSRPRNKFDPNRSSKRRVRRGSDPIHNRS 80
            +   ++++  NKFDPN+SSKRRVRRGSDPIHNRS
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

BLAST of Carg20420 vs. ExPASy TrEMBL
Match: A5APJ5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010312 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 0

Query: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRH---------------VLE 60
          MVFS  RV LV L+C + +LAV+P++  GL S+DL LR  +                V+E
Sbjct: 1  MVFSAQRV-LVFLIC-IGVLAVEPDKVSGLRSIDLVLRQSQEDHMLAPKNQRILKAVVVE 60

Query: 61 D-PRDRNSRPRN-KFDPNRSSKRRVRRGSDPIHNRS 80
          D  R+ N+ P N KFD N+SSKRRVRRGSDPIHNRS
Sbjct: 61 DLNREENAAPVNKKFDLNQSSKRRVRRGSDPIHNRS 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7036811.12.8e-32100.00hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6607120.16.3e-3298.73hypothetical protein SDJN03_00462, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0032271.17.2e-2078.16CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLA... [more]
KGN61380.11.2e-1974.71hypothetical protein Csa_006322 [Cucumis sativus][more]
KAG7029950.14.7e-1973.56hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SRV23.5e-2078.16CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A0A0LHH05.9e-2074.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1[more]
A0A067GTG01.2e-0746.88Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1[more]
V4VH781.2e-0746.88Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033178mg PE=4 ... [more]
A5APJ51.7e-0651.04Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010312 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..79
NoneNo IPR availablePANTHERPTHR36726:SF4CLAVATA3/ESR (CLE)-RELATED PROTEIN 45coord: 51..79
coord: 1..39
IPR038821CLE-related protein 45-likePANTHERPTHR36726CLAVATA3/ESR (CLE)-RELATED PROTEIN 45coord: 51..79
coord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20420-RACarg20420-RAmRNA