Carg19892 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19892
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Cellulose synthase
Location	Carg_Chr13: 7006695 .. 7009469 (+)
RNA-Seq Expression	Carg19892
Synteny	Carg19892

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGTGTATCCTTTCTTGTATCTTGAAGCTTTTTTTTCTTTAATAAATCAGGGTTCTGTAATCCATTCTAGTCCCATGTGCTTTACAGTTTTTTAATTTTGTTATATGGATCTCATCCTTGCATCCTAAACCATATATTTAGATCTGTAGCAGTGTTCAGTTCCTTCCTTGGAGACCTTGGGAAGGTAAACTCAACGTTCTAACCTTCAGCGATCCAATCTGTGATCCAATCTGCATTGTTTAGAAGTAGCTAAACATATTGAATTATGAGTTATTAATACCCTTAATCTTTGTTCTGGATTTGGAGAGGTTCAAAGTAGAGAGCTTATTTATCAAGAGGCTTCATCTCATTGCAATTGAAAAAAAAAAAAAAAAAAAAAAACTGAAAATATCCCAGTTTCAAGATTTCTGTCTAATACTTATGCTCGAGTCTAAATCTTCACTGAGATATACTATTCTTGTTGCATATTTCGTTGCTTATTGTGAAGAAAAAAACATCTTAAAATAGTTAATCTGGATTTGGAGTGATTGTTTGAGGTCAAGAGAAGACTTCTTATTCTTTCACATGAAAGATGTATTTCAATTTCCATGTATTACAATTTGTCCATCAACTTGAAGTTGGCTGTAGGATCTTAGATCCGGAGGTTTCAGAGTTTTCTAGGAATATGATAGACAAATGCTTAACAGAGTAAACCAAGTCTACAATTACAAGTTACCATTGGCCAGAAAGTTAGTATTTATTGTCTATGTTGTTTCCCATGCAAATGTATTTACAGTCCCTGGATGACCTCTAGACATTATTGAAGAGGGTACCAATTTGAGAGAATCAAACTCAAGTTCTATATATTGAGGATTTATGGACGTTGTTCTTGCGTTGACTATCGCTCTTAGAATTTTCTGAACAATAAGAAGTTATAAATGTTGGGGGATAACGTGTCACAAGTTTGAATTGATTTTTCCTGCGACTTCGGAGTCACCTACAACATTGGTTTCTTTGCTAGTTGTTATTCTCATACTGTATCGTCATTGTTTATGTTTCAAGTTGTACCATGTTTAAATAATTGAAAGCCTCACCATTCGTATCTGACTGCTTTTTTACAATTCCGGCATTATACAGTTATTACGGGAGGTCTTGATTCAAAGCTCATTATGTGGGACTTTTCCAGAGGACGTCCCATCAAAGTTCTTGATTTTGGTTCGTACTTATGCAGCCCATCTGTTTATGTGATTATTATTCCATGCTTTTCATTTTGTTTGCACTTGTGTGCCCGTTTTTCTTTTCGAGCATAGTTCATCTAATTTGTTTAACTCCCTATCTTAAACAGTGACTTATCCAAAATAACGACTCCAAGACAGTTGTACGAATATTCCTTGCTAATTTTCTTGCATAAGTGTAGAGAGTCGGGGGCCTCATTTGCCTATTATTATATTCCTCAGAACTTGATTTTCATTTTCCTGTAAAGTGAATCATGCAAGTGTTTAGAATTCTAGCCTGAAAGCTTATTTCGCATGTGGAAGTGGAATTGGTTTATGGATAAATACAATATACTAGTCGTAGTTTTAATCCTGGAAGGTATTTGTATCTTTCCTGTACAAGTTTTCTTTGATCCTGCCGTGAAGTTAGGAGCAGAAGTTGGGCATAGGGCCCCTTGGGTTTTATGTAAATTCATAACAATGTCTACAAGAACTCAAACTTGGGTCGTAAGGAGTACGCCAATTTCTGTTCAGATAATGTAAAATACACACTCATATAAGACTTCACTGTTGCTAATATTTGCATTGTTTTTTCGTTTTCATCCTTCAACAGACATCCCTGATAACAACCCTTCCAGTAACACAGGGCAATGTTTTAATCCTGCATTTATTCATGCAATAGTAGTTCCTGAAGTTAATATGGTGGACAGATTGGGCCAGATATGTGTGGTTGCAAGGGGTGATGGTGTTGTTCATGTGATTGATATTGAATCCGAGAAATCAAAGATTTCCACAAAAACTAGTAAAAGAACACAAACTAGATCTAAGGGAGTTACAGCAGCTTGCGATGGGGATAACCAAGAGCAAAGTGGAAGAAAGAGGTTATATTTGGATTACACTGTTGGTGGACATTCTGCAGCTGTGTCCTGTGTGTAAGTAATTTCTTTCTCCTCCTCTGCAACATGACGGATCTCCCTTACCAAGTGGAAAATTTCAGGGCATTTTCTCGATTTGGGGAGAAAGGGAAGTTCATAGTTTCTGGTGGGAATGATAAATGCGTAAAGCTATGGAATTGGTCTGGAGTTCCTGATGCTGGGGAAGCTGGCAGCAGCAACAACAACAAAATTCTTCATTTGAACATCGACCTGAACAAAAAGGTTGTTATTTATTGATAGTTACATGTCACCATCGATATCGTTATTCATTACTTGTGCTTTTATGAATTAGTTTCTAAGTTTGGAATTTAACCTTCTGCAGGTGAATTGGCTATGTACTACTCCATCTGACACAGAAAACCTTGTGGTCTGTGATACCAGCAAGGTAGTGAAGGTATATAATGTTGCATAAGCCGTCGGTGGTGCCTTCCCACAGAATCAGAGGTTAGAAAGAAATCCGAGGAATTATGAACCTGCTGCTTTTCTTATATTTAAAGCATCTGATTTTAGATCCTTTACAGACAATTTTGAGACCAAGAGTAAGCATTTGCTGAGAATTACTATGCTTCTATTCACCACAAAATTACACAACTTTGACACTAGATTTACTTGAAAAGGCTATTTGAAATATTCTTATTTTTATTTA

mRNA sequence

CAAGTGTATCCTTTCTTGTATCTTGAAGCTTTTTTTTCTTTAATAAATCAGGGTTCTGTAATCCATTCTAGTCCCATGTGCTTTACAGTTTTTTAATTTTGTTATATGGATCTCATCCTTGCATCCTAAACCATATATTTAGATCTGTAGCAGTGTTCAGTTCCTTCCTTGGAGACCTTGGGAAGTTATTACGGGAGGTCTTGATTCAAAGCTCATTATGTGGGACTTTTCCAGAGGACGTCCCATCAAAGTTCTTGATTTTGACATCCCTGATAACAACCCTTCCAGTAACACAGGGCAATGTTTTAATCCTGCATTTATTCATGCAATAGTAGTTCCTGAAGTTAATATGGTGGACAGATTGGGCCAGATATGTGTGGTTGCAAGGGGTGATGGTGTTGTTCATGTGATTGATATTGAATCCGAGAAATCAAAGATTTCCACAAAAACTAGTAAAAGAACACAAACTAGATCTAAGGGAGTTACAGCAGCTTGCGATGGGGATAACCAAGAGCAAAGTGGAAGAAAGAGGTTATATTTGGATTACACTGTTGGTGGACATTCTGCAGCTGTGTCCTGTGTGGCATTTTCTCGATTTGGGGAGAAAGGGAAGTTCATAGTTTCTGGTGGGAATGATAAATGCGTAAAGCTATGGAATTGGTCTGGAGTTCCTGATGCTGGGGAAGCTGGCAGCAGCAACAACAACAAAATTCTTCATTTGAACATCGACCTGAACAAAAAGGTGAATTGGCTATGTACTACTCCATCTGACACAGAAAACCTTGTGGTCTGTGATACCAGCAAGGTAGTGAAGGTATATAATGTTGCATAAGCCGTCGGTGGTGCCTTCCCACAGAATCAGAGGTTAGAAAGAAATCCGAGGAATTATGAACCTGCTGCTTTTCTTATATTTAAAGCATCTGATTTTAGATCCTTTACAGACAATTTTGAGACCAAGAGTAAGCATTTGCTGAGAATTACTATGCTTCTATTCACCACAAAATTACACAACTTTGACACTAGATTTACTTGAAAAGGCTATTTGAAATATTCTTATTTTTATTTA

Coding sequence (CDS)

ATGTGGGACTTTTCCAGAGGACGTCCCATCAAAGTTCTTGATTTTGACATCCCTGATAACAACCCTTCCAGTAACACAGGGCAATGTTTTAATCCTGCATTTATTCATGCAATAGTAGTTCCTGAAGTTAATATGGTGGACAGATTGGGCCAGATATGTGTGGTTGCAAGGGGTGATGGTGTTGTTCATGTGATTGATATTGAATCCGAGAAATCAAAGATTTCCACAAAAACTAGTAAAAGAACACAAACTAGATCTAAGGGAGTTACAGCAGCTTGCGATGGGGATAACCAAGAGCAAAGTGGAAGAAAGAGGTTATATTTGGATTACACTGTTGGTGGACATTCTGCAGCTGTGTCCTGTGTGGCATTTTCTCGATTTGGGGAGAAAGGGAAGTTCATAGTTTCTGGTGGGAATGATAAATGCGTAAAGCTATGGAATTGGTCTGGAGTTCCTGATGCTGGGGAAGCTGGCAGCAGCAACAACAACAAAATTCTTCATTTGAACATCGACCTGAACAAAAAGGTGAATTGGCTATGTACTACTCCATCTGACACAGAAAACCTTGTGGTCTGTGATACCAGCAAGGTAGTGAAGGTATATAATGTTGCATAA

Protein sequence

MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDGVVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVSCVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLCTTPSDTENLVVCDTSKVVKVYNVA

Homology

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BLAST of Carg19892 vs. NCBI nr
Match: KAG7019563.1 (hypothetical protein SDJN02_18524 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 421.8 bits (1083), Expect = 3.4e-114
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 60
           MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG
Sbjct: 1   MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 60

Query: 61  VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS 120
           VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS
Sbjct: 61  VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS 120

Query: 121 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 180
           CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC
Sbjct: 121 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 180

Query: 181 TTPSDTENLVVCDTSKVVKVYNVA 205
           TTPSDTENLVVCDTSKVVKVYNVA
Sbjct: 181 TTPSDTENLVVCDTSKVVKVYNVA 204

[Close]

BLAST of Carg19892 vs. NCBI nr
Match: XP_023001639.1 (cellulose synthase A catalytic subunit 8 [UDP-forming]-like [Cucurbita maxima])

HSP 1 Score: 416.8 bits (1070), Expect = 1.1e-112
Identity = 202/204 (99.02%), Postives = 202/204 (99.02%), Query Frame = 0


Query: 1   MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 60
           MWDFSRGRPIKVLDFD PDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG
Sbjct: 171 MWDFSRGRPIKVLDFDFPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 230

Query: 61  VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS 120
           VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACD DNQEQSGRKRLYLDYTVGGHSAAVS
Sbjct: 231 VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDVDNQEQSGRKRLYLDYTVGGHSAAVS 290

Query: 121 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 180
           CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC
Sbjct: 291 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 350

Query: 181 TTPSDTENLVVCDTSKVVKVYNVA 205
           TTPSDTENLVVCDTSKVVKVYNVA
Sbjct: 351 TTPSDTENLVVCDTSKVVKVYNVA 374

[Close]

BLAST of Carg19892 vs. NCBI nr
Match: XP_022927120.1 (cellulose synthase A catalytic subunit 8 [UDP-forming]-like [Cucurbita moschata])

HSP 1 Score: 412.5 bits (1059), Expect = 2.1e-111
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 60
           MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG
Sbjct: 171 MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 230

Query: 61  VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS 120
           VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS
Sbjct: 231 VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS 290

Query: 121 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 180
           CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC
Sbjct: 291 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 350

Query: 181 TTPSDTENLVVCDTSKVVK 200
           TTPSDTENLVVCDTSKVVK
Sbjct: 351 TTPSDTENLVVCDTSKVVK 369

[Close]

BLAST of Carg19892 vs. NCBI nr
Match: XP_023520223.1 (cellulose synthase A catalytic subunit 8 [UDP-forming]-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 404.1 bits (1037), Expect = 7.4e-109
Identity = 197/204 (96.57%), Postives = 201/204 (98.53%), Query Frame = 0


Query: 1   MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 60
           MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVD+LGQICVVARGDG
Sbjct: 171 MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDKLGQICVVARGDG 230

Query: 61  VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS 120
           VVHVIDIESEKSKISTK+SKRTQTRSKGVTAACD DN  QSGRKRLYLDYTVGGHSAAVS
Sbjct: 231 VVHVIDIESEKSKISTKSSKRTQTRSKGVTAACDVDNL-QSGRKRLYLDYTVGGHSAAVS 290

Query: 121 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 180
           CVAFSRFGEKGKF+VSGGNDKCVKLWNWSGVPDAGEAGSS+NNKILHLNIDLNKKVNWLC
Sbjct: 291 CVAFSRFGEKGKFVVSGGNDKCVKLWNWSGVPDAGEAGSSSNNKILHLNIDLNKKVNWLC 350

Query: 181 TTPSDTENLVVCDTSKVVKVYNVA 205
           TTPSDTENLVVCDTSKVVKVYNVA
Sbjct: 351 TTPSDTENLVVCDTSKVVKVYNVA 373

[Close]

BLAST of Carg19892 vs. NCBI nr
Match: KAG6583946.1 (Cellulose synthase A catalytic subunit 8 [UDP-forming]-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 390.6 bits (1002), Expect = 8.4e-105
Identity = 188/190 (98.95%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 60
           MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVD+LGQICVVARGDG
Sbjct: 171 MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDKLGQICVVARGDG 230

Query: 61  VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS 120
           VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS
Sbjct: 231 VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS 290

Query: 121 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 180
           CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC
Sbjct: 291 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 350

Query: 181 TTPSDTENLV 191
           TTPS TENLV
Sbjct: 351 TTPSVTENLV 360

[Close]

BLAST of Carg19892 vs. ExPASy TrEMBL
Match: A0A6J1KNA5 (Cellulose synthase OS=Cucurbita maxima OX=3661 GN=LOC111495711 PE=3 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 5.3e-113
Identity = 202/204 (99.02%), Postives = 202/204 (99.02%), Query Frame = 0


Query: 1   MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 60
           MWDFSRGRPIKVLDFD PDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG
Sbjct: 171 MWDFSRGRPIKVLDFDFPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 230

Query: 61  VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS 120
           VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACD DNQEQSGRKRLYLDYTVGGHSAAVS
Sbjct: 231 VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDVDNQEQSGRKRLYLDYTVGGHSAAVS 290

Query: 121 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 180
           CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC
Sbjct: 291 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 350

Query: 181 TTPSDTENLVVCDTSKVVKVYNVA 205
           TTPSDTENLVVCDTSKVVKVYNVA
Sbjct: 351 TTPSDTENLVVCDTSKVVKVYNVA 374

[Close]

BLAST of Carg19892 vs. ExPASy TrEMBL
Match: A0A6J1EMZ7 (Cellulose synthase OS=Cucurbita moschata OX=3662 GN=LOC111434060 PE=3 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.0e-111
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 60
           MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG
Sbjct: 171 MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 230

Query: 61  VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS 120
           VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS
Sbjct: 231 VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS 290

Query: 121 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 180
           CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC
Sbjct: 291 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 350

Query: 181 TTPSDTENLVVCDTSKVVK 200
           TTPSDTENLVVCDTSKVVK
Sbjct: 351 TTPSDTENLVVCDTSKVVK 369

[Close]

BLAST of Carg19892 vs. ExPASy TrEMBL
Match: A0A1S3BF87 (Cellulose synthase OS=Cucumis melo OX=3656 GN=LOC103489350 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 9.7e-99
Identity = 175/204 (85.78%), Postives = 193/204 (94.61%), Query Frame = 0


Query: 1   MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 60
           MWDFSRGRPI+VLDFDIPDN+PSS+TGQCFNPAFIHAI VPEVNM+DRLGQICVVARGDG
Sbjct: 171 MWDFSRGRPIQVLDFDIPDNHPSSSTGQCFNPAFIHAIAVPEVNMLDRLGQICVVARGDG 230

Query: 61  VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS 120
           +VHVIDIE+EKSK S+KT K+ QTRSKGV AACD DNQEQ+GRKRLYLDYTVGGHSAAVS
Sbjct: 231 IVHVIDIETEKSKTSSKTVKKVQTRSKGVAAACDMDNQEQTGRKRLYLDYTVGGHSAAVS 290

Query: 121 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 180
           CVAFS+FGEKGKFIVSGGNDKC+KLWNW  VPD G+  SS+NN+ILHLNI+L+KKVNWLC
Sbjct: 291 CVAFSQFGEKGKFIVSGGNDKCIKLWNWREVPDGGKT-SSSNNEILHLNINLSKKVNWLC 350

Query: 181 TTPSDTENLVVCDTSKVVKVYNVA 205
           TTPS+TENL+VCDTSKVVKVYNVA
Sbjct: 351 TTPSETENLIVCDTSKVVKVYNVA 373

[Close]

BLAST of Carg19892 vs. ExPASy TrEMBL
Match: A0A5A7USB3 (Cellulose synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002440 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.3e-98
Identity = 173/203 (85.22%), Postives = 192/203 (94.58%), Query Frame = 0


Query: 1   MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 60
           MWDFSRGRPI+VLDFDIPDN+PSS+TGQCFNPAFIHAI VPEVNM+DRLGQICVVARGDG
Sbjct: 171 MWDFSRGRPIQVLDFDIPDNHPSSSTGQCFNPAFIHAIAVPEVNMLDRLGQICVVARGDG 230

Query: 61  VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS 120
           +VHVIDIE+EKSK S+KT K+ QTRSKGV AACD DNQEQ+GRKRLYLDYTVGGHSAAVS
Sbjct: 231 IVHVIDIETEKSKTSSKTVKKVQTRSKGVAAACDMDNQEQTGRKRLYLDYTVGGHSAAVS 290

Query: 121 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 180
           CVAFS+FGEKGKFIVSGGNDKC+KLWNW  VPD G+  SS+NN+ILHLNI+L+KKVNWLC
Sbjct: 291 CVAFSQFGEKGKFIVSGGNDKCIKLWNWREVPDGGKT-SSSNNEILHLNINLSKKVNWLC 350

Query: 181 TTPSDTENLVVCDTSKVVKVYNV 204
           TTPS+TENL+VCDTSKVVKVYN+
Sbjct: 351 TTPSETENLIVCDTSKVVKVYNL 372

[Close]

BLAST of Carg19892 vs. ExPASy TrEMBL
Match: A0A0A0LUL1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470260 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.3e-98
Identity = 173/204 (84.80%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 1   MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 60
           MWDFSRGRPI+VLDFDIPDN+PSS+T QCFNPAFIHAI VPEVNM+DRLGQICVVARGDG
Sbjct: 171 MWDFSRGRPIQVLDFDIPDNHPSSSTEQCFNPAFIHAIAVPEVNMLDRLGQICVVARGDG 230

Query: 61  VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS 120
           +VHVIDIESEKSK S+KT K+ Q+RSKGVTAACD +NQEQ+GRK+LYLDYTVGGHSAAVS
Sbjct: 231 IVHVIDIESEKSKTSSKTGKKVQSRSKGVTAACDMNNQEQTGRKKLYLDYTVGGHSAAVS 290

Query: 121 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 180
           CVAFS+FGEKGKFIVSGGNDKC+KLWNW  VPDAG+  SS+NN++LHLNI+L+KKVNWLC
Sbjct: 291 CVAFSQFGEKGKFIVSGGNDKCIKLWNWCEVPDAGKT-SSSNNEVLHLNINLSKKVNWLC 350

Query: 181 TTPSDTENLVVCDTSKVVKVYNVA 205
           TTPS+TENL+VCDTSKVVKVYNVA
Sbjct: 351 TTPSETENLIVCDTSKVVKVYNVA 373

[Close]

BLAST of Carg19892 vs. TAIR 10
Match: AT5G45760.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 221.9 bits (564), Expect = 4.8e-58
Identity = 108/204 (52.94%), Postives = 149/204 (73.04%), Query Frame = 0


Query: 1   MWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDG 60
           +WDFS+GR  K++DF    NN   N+GQC NPAF+H+I +PE++MVD+L +IC VARGDG
Sbjct: 175 LWDFSKGRSQKIIDFGSDTNN---NSGQCLNPAFVHSIAIPEMDMVDKLDKICAVARGDG 234

Query: 61  VVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVS 120
           +V++I+IESE S+  T +   + + S  V              KR+ LDY+VGGH++AVS
Sbjct: 235 IVNLINIESELSRKGTSSKGSSSSSSNNVV-------------KRVCLDYSVGGHNSAVS 294

Query: 121 CVAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLC 180
           CVAFS F EKG+F++SGGNDK VK+W+     D     ++NN+ +LHLNI+L+KKVNWLC
Sbjct: 295 CVAFSLFQEKGRFLISGGNDKTVKIWDCFKCLDPN--NNNNNSDLLHLNINLSKKVNWLC 354

Query: 181 TTPSDTENLVVCDTSKVVKVYNVA 205
           T  SD+ENLVVCDT++VVKVY+++
Sbjct: 355 TNQSDSENLVVCDTTRVVKVYSIS 360

[Close]

BLAST of Carg19892 vs. TAIR 10
Match: AT5G45760.2 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 201.1 bits (510), Expect = 8.8e-52
Identity = 97/185 (52.43%), Postives = 138/185 (74.59%), Query Frame = 0


Query: 20  NNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDGVVHVIDIESEKSKISTKTS 79
           ++ ++N+GQC NPAF+H+I +PE++MVD+L +IC VARGDG+V++I+IESE S+  T + 
Sbjct: 165 SDTNNNSGQCLNPAFVHSIAIPEMDMVDKLDKICAVARGDGIVNLINIESELSRKGTSSK 224

Query: 80  KRTQTRSKGVTAACDGDNQEQSGRKRLYLDYTVGGHSAAVSCVAFSRFGEKGKFIVSGGN 139
             + + S  V              KR+ LDY+VGGH++AVSCVAFS F EKG+F++SGGN
Sbjct: 225 GSSSSSSNNVV-------------KRVCLDYSVGGHNSAVSCVAFSLFQEKGRFLISGGN 284

Query: 140 DKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLCTTPSDTENLVVCDTSKVVK 199
           DK VK+W+     D     ++NN+ +LHLNI+L+KKVNWLCT  SD+ENLVVCDT++VVK
Sbjct: 285 DKTVKIWDCFKCLDPN--NNNNNSDLLHLNINLSKKVNWLCTNQSDSENLVVCDTTRVVK 334

Query: 200 VYNVA 205
           VY+++
Sbjct: 345 VYSIS 334

The following BLAST results are available for this feature:

BLAST of Carg19892 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019563.1	3.4e-114	100.00	hypothetical protein SDJN02_18524 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023001639.1	1.1e-112	99.02	cellulose synthase A catalytic subunit 8 [UDP-forming]-like [Cucurbita maxima]	[more]
XP_022927120.1	2.1e-111	100.00	cellulose synthase A catalytic subunit 8 [UDP-forming]-like [Cucurbita moschata]	[more]
XP_023520223.1	7.4e-109	96.57	cellulose synthase A catalytic subunit 8 [UDP-forming]-like [Cucurbita pepo subs...	[more]
KAG6583946.1	8.4e-105	98.95	Cellulose synthase A catalytic subunit 8 [UDP-forming]-like protein, partial [Cu...	[more]

BLAST of Carg19892 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg19892 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KNA5	5.3e-113	99.02	Cellulose synthase OS=Cucurbita maxima OX=3661 GN=LOC111495711 PE=3 SV=1	[more]
A0A6J1EMZ7	1.0e-111	100.00	Cellulose synthase OS=Cucurbita moschata OX=3662 GN=LOC111434060 PE=3 SV=1	[more]
A0A1S3BF87	9.7e-99	85.78	Cellulose synthase OS=Cucumis melo OX=3656 GN=LOC103489350 PE=3 SV=1	[more]
A0A5A7USB3	6.3e-98	85.22	Cellulose synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G00...	[more]
A0A0A0LUL1	6.3e-98	84.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470260 PE=4 SV=1	[more]

BLAST of Carg19892 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45760.1	4.8e-58	52.94	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G45760.2	8.8e-52	52.43	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 105..147 e-value: 1.1E-6 score: 38.2 coord: 162..202 e-value: 36.0 score: 7.2
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 111..147 e-value: 1.2E-5 score: 25.9
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 112..147 score: 11.778342
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..204 e-value: 1.6E-15 score: 58.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..97
None	No IPR available	PANTHER	PTHR45296	TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN	coord: 1..203
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 112..147 score: 9.836508
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 2..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19892-RA	Carg19892-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0071555	cell wall organization
biological_process	GO:0006325	chromatin organization
biological_process	GO:0006260	DNA replication
cellular_component	GO:0000781	chromosome, telomeric region
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000776	kinetochore
cellular_component	GO:0005815	microtubule organizing center
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0016760	cellulose synthase (UDP-forming) activity
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding