Carg19863 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19863
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnegative regulator of systemic acquired resistance SNI1
LocationCarg_Chr13: 7140632 .. 7141271 (-)
RNA-Seq ExpressionCarg19863
SyntenyCarg19863
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGCCAATTATTCTTCAGGCTTTTCTGTTTCTCTCCACTAAGCAAATGGGTGAAGGCCCTCCCCGATTCCAAAGAACACTGGCGGCGGTTCGGTCGAGGGAAACTTGCAAGAATTTGATATCAGTTTTTAAATTGCCTGCGGAATTGACAAGTAAGTTTCTCATCTTTTATCTTCTACGGATTCCATTGTCTTTCTGTCTCCATGTTATTTGGCTGCATTTTATTTATGACTTGTCAAACTTAATATATATGTGTGTGTGTGTGTGTGTATCTCGGCCAATATGTCTACGCTTAGACGTTTGCCTGCCCACGGGCAAGCTTTATATTTCACGTCAGCATATTTCTGCCAAATTAAGGAACCATTCCTCTGATCTTTTGGTATTGCCGCTGGAAGTGAATGGAATTCCACTATCCATGTGTCTCTCCATGTCTAATGCACGACCCTTGCAAGCGTGACAACTGAACGTCAATTTGTAGTTTAACTTCAAATTTCATTGTATTTACATTGTCGTTCAACATGTTTATTTCTGTTTTTGTCGATACTGGAAAAAACTCTGATTTATATGCTACTACGAGTTTCGGTCATGACAATTTGGTTCTTGTCCTTATCCTTATAGACGATGACTACAATCAGTCCTAA

mRNA sequence

TGGCCAATTATTCTTCAGGCTTTTCTGTTTCTCTCCACTAAGCAAATGGGTGAAGGCCCTCCCCGATTCCAAAGAACACTGGCGGCGGTTCGGTCGAGGGAAACTTGCAAGAATTTGATATCAGTTTTTAAATTGCCTGCGGAATTGACAAACGATGACTACAATCAGTCCTAA

Coding sequence (CDS)

TGGCCAATTATTCTTCAGGCTTTTCTGTTTCTCTCCACTAAGCAAATGGGTGAAGGCCCTCCCCGATTCCAAAGAACACTGGCGGCGGTTCGGTCGAGGGAAACTTGCAAGAATTTGATATCAGTTTTTAAATTGCCTGCGGAATTGACAAACGATGACTACAATCAGTCCTAA

Protein sequence

WPIILQAFLFLSTKQMGEGPPRFQRTLAAVRSRETCKNLISVFKLPAELTNDDYNQS
Homology
[Close]
BLAST of Carg19863 vs. NCBI nr
Match: KAG7019591.1 (hypothetical protein SDJN02_18553, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 1.0e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  WPIILQAFLFLSTKQMGEGPPRFQRTLAAVRSRETCKNLISVFKLPAELTNDDYNQS 58
          WPIILQAFLFLSTKQMGEGPPRFQRTLAAVRSRETCKNLISVFKLPAELTNDDYNQS
Sbjct: 1  WPIILQAFLFLSTKQMGEGPPRFQRTLAAVRSRETCKNLISVFKLPAELTNDDYNQS 57

[Close]
BLAST of Carg19863 vs. NCBI nr
Match: XP_022927209.1 (negative regulator of systemic acquired resistance SNI1 [Cucurbita moschata])

HSP 1 Score: 53.1 bits (126), Expect = 8.9e-04
Identity = 27/38 (71.05%), Postives = 28/38 (73.68%), Query Frame = 0 

Query: 6   QAFLFLSTKQMGEGPPRFQRTLAAVRSRETCKNLISVF 44
           QAFLFLSTKQMGEG P  +  LA     ETCKNLISVF
Sbjct: 402 QAFLFLSTKQMGEGLPDSKEQLAGGSVEETCKNLISVF 439

[Close]
BLAST of Carg19863 vs. ExPASy TrEMBL
Match: A0A6J1EHD6 (negative regulator of systemic acquired resistance SNI1 OS=Cucurbita moschata OX=3662 GN=LOC111434128 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.3e-04
Identity = 27/38 (71.05%), Postives = 28/38 (73.68%), Query Frame = 0 

Query: 6   QAFLFLSTKQMGEGPPRFQRTLAAVRSRETCKNLISVF 44
           QAFLFLSTKQMGEG P  +  LA     ETCKNLISVF
Sbjct: 402 QAFLFLSTKQMGEGLPDSKEQLAGGSVEETCKNLISVF 439

The following BLAST results are available for this feature:
BLAST of Carg19863 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019591.11.0e-23100.00hypothetical protein SDJN02_18553, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022927209.18.9e-0471.05negative regulator of systemic acquired resistance SNI1 [Cucurbita moschata][more]
BLAST of Carg19863 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19863 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EHD64.3e-0471.05negative regulator of systemic acquired resistance SNI1 OS=Cucurbita moschata OX... [more]
BLAST of Carg19863 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19863-RACarg19863-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048519 negative regulation of biological process
cellular_component GO:0043229 intracellular organelle