Carg19528 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19528
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionacetyltransferase NSI-like
LocationCarg_Chr03: 3660990 .. 3661504 (-)
RNA-Seq ExpressionCarg19528
SyntenyCarg19528
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGCCAGCTGAAGGAGAAGATGGACCAAGGCGACTCTGTGGAGAACAGACAACCGCGAGGGCACAGCTGAATCTTCAACTACAGCAAATCATCCCTCCTTCATTGCTCTGCTCCGGCGATTTCTCTGATGCTCCGATTTGGATTCGAGGTCTCAAAACTATTCTCACCAGTGGACTTAATCCCGGTTCAGTCACGTCATCCAGAGATGATGTCTCAGAAACTTATCGCCGCCTCTTCTCCGTTAGTACTATTCTCAACGTCCATTCTTCTTATCCATCTTAGTTGTTCCTGTTAGTTTGTTCAAATTTCCTTTCTCTGATTACCTATTGAGTTGTTCTTCGTAGCGGGAGCTGAATTTGGTTCTGTTTGTAGCTTAATTCCGTCGCTTATTTGTATGATTTCTTAGGGTTCTTTTTTTTAAATTTTTTTTTGGTTGAAATGTTGCAGATGCCAAGTTGTTCTGTTGGATTGTAACTCTAAAGGATCGAACTCGTTTCTGGTTCCTCGCAATCTGA

mRNA sequence

ACGCCAGCTGAAGGAGAAGATGGACCAAGGCGACTCTGTGGAGAACAGACAACCGCGAGGGCACAGCTGAATCTTCAACTACAGCAAATCATCCCTCCTTCATTGCTCTGCTCCGGCGATTTCTCTGATGCTCCGATTTGGATTCGAGGTCTCAAAACTATTCTCACCAGTGGACTTAATCCCGGTTCAGTCACGTCATCCAGAGATGATGTCTCAGAAACTTATCGCCGCCTCTTCTCCGTTAGTACTATTCTCAACGTCCATTCTTCTTATCCATCTTAATGCCAAGTTGTTCTGTTGGATTGTAACTCTAAAGGATCGAACTCGTTTCTGGTTCCTCGCAATCTGA

Coding sequence (CDS)

ATGCTCCGATTTGGATTCGAGGTCTCAAAACTATTCTCACCAGTGGACTTAATCCCGGTTCAGTCACGTCATCCAGAGATGATGTCTCAGAAACTTATCGCCGCCTCTTCTCCGTTAGTACTATTCTCAACGTCCATTCTTCTTATCCATCTTAATGCCAAGTTGTTCTGTTGGATTGTAACTCTAAAGGATCGAACTCGTTTCTGGTTCCTCGCAATCTGA

Protein sequence

MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSPLVLFSTSILLIHLNAKLFCWIVTLKDRTRFWFLAI
Homology
[Close]
BLAST of Carg19528 vs. NCBI nr
Match: KAG7033706.1 (hypothetical protein SDJN02_03431 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 3.8e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSPLVLFSTSILLIHLNAKLFCWIV 60
          MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSPLVLFSTSILLIHLNAKLFCWIV
Sbjct: 1  MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSPLVLFSTSILLIHLNAKLFCWIV 60

Query: 61 TLKDRTRFWFLAI 74
          TLKDRTRFWFLAI
Sbjct: 61 TLKDRTRFWFLAI 73

[Close]
BLAST of Carg19528 vs. NCBI nr
Match: XP_022949609.1 (acetyltransferase NSI-like [Cucurbita moschata])

HSP 1 Score: 78.2 bits (191), Expect = 3.3e-11
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 1  MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSPLVLFSTSILLIHLNAK 55
          MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSP       ++L+  N+K
Sbjct: 1  MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSP-----CQVVLLDCNSK 49

[Close]
BLAST of Carg19528 vs. NCBI nr
Match: KAG6603523.1 (putative acetyltransferase TAP2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 3.3e-11
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 1  MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSPLVLFSTSILLIHLNAK 55
          MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSP       ++L+  N+K
Sbjct: 1  MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSP-----CQVVLLDCNSK 49

[Close]
BLAST of Carg19528 vs. NCBI nr
Match: XP_022978261.1 (acetyltransferase NSI-like [Cucurbita maxima])

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-10
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 1  MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSPLVLFSTSILLIHLNAK 55
          MLRFGFEVSKLFSPVDLIPVQSR+PEMMSQKLIAASSP       ++L+  N+K
Sbjct: 1  MLRFGFEVSKLFSPVDLIPVQSRYPEMMSQKLIAASSP-----CQVVLLDCNSK 49

[Close]
BLAST of Carg19528 vs. NCBI nr
Match: XP_023543151.1 (acetyltransferase NSI-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.1 bits (183), Expect = 2.8e-10
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 1  MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSP 39
          MLRFGFEVSKLFSPVDLIPVQSR+PEMMSQKLIAASSP
Sbjct: 1  MLRFGFEVSKLFSPVDLIPVQSRYPEMMSQKLIAASSP 38

[Close]
BLAST of Carg19528 vs. ExPASy TrEMBL
Match: A0A6J1GDB9 (acetyltransferase NSI-like OS=Cucurbita moschata OX=3662 GN=LOC111452951 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 1  MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSPLVLFSTSILLIHLNAK 55
          MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSP       ++L+  N+K
Sbjct: 1  MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSP-----CQVVLLDCNSK 49

[Close]
BLAST of Carg19528 vs. ExPASy TrEMBL
Match: A0A6J1IM80 (acetyltransferase NSI-like OS=Cucurbita maxima OX=3661 GN=LOC111478297 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.0e-11
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 1  MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSPLVLFSTSILLIHLNAK 55
          MLRFGFEVSKLFSPVDLIPVQSR+PEMMSQKLIAASSP       ++L+  N+K
Sbjct: 1  MLRFGFEVSKLFSPVDLIPVQSRYPEMMSQKLIAASSP-----CQVVLLDCNSK 49

The following BLAST results are available for this feature:
BLAST of Carg19528 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033706.13.8e-31100.00hypothetical protein SDJN02_03431 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022949609.13.3e-1175.93acetyltransferase NSI-like [Cucurbita moschata][more]
KAG6603523.13.3e-1175.93putative acetyltransferase TAP2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022978261.11.6e-1074.07acetyltransferase NSI-like [Cucurbita maxima][more]
XP_023543151.12.8e-1097.37acetyltransferase NSI-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg19528 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19528 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GDB91.6e-1175.93acetyltransferase NSI-like OS=Cucurbita moschata OX=3662 GN=LOC111452951 PE=4 SV... [more]
A0A6J1IM808.0e-1174.07acetyltransferase NSI-like OS=Cucurbita maxima OX=3661 GN=LOC111478297 PE=4 SV=1[more]
BLAST of Carg19528 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19528-RACarg19528-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008080 N-acetyltransferase activity