Carg19396 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19396
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA-binding protein 28
Location	Carg_Chr19: 6847546 .. 6856604 (+)
RNA-Seq Expression	Carg19396
Synteny	Carg19396

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCGGCAGTTTTTTTGCAGTCCGTGGAAAGCTTTCAAGCAGCCATGGGGAAGAACAAGAGGTTTAAGGACGGTGGCGAGAAGGGAGCCGCCGCCGGCGATCACTGCCCTTCCAAGGTTTTTGTCAAGAACTTGCCGTACTCGTTCACCAACTCACAGGTTCGTACTTCCTCTATTGCCTGTTTGTTTTCTGAGAAAAACTTGAGCTGAAGTATGAATGTAGGAATTTCTTTTTGTACTTTTGTTTCTGAACTCGACTCTTAGAAGCACGCAATCGGGTTTTTTTATTATTATCGGAAGTTATTGGTTTTGCAAGCGGTTTGCGGAAAGGCAATGTTTTGATTTGTGTTCTTTCTGATTGTTTTGCTGTTGAATGCAATGTTAGTGACCTTTCCTGTGTTTTCTGTATGAACTAGCTTGAAGAAACATTCAGTGATGTTGGACCGGTCCGGCGGTGCTTCATGGTTACGCAGAAGGGTAAGTACGTCTATGCAGGATTATCTCGGATTGGTGTTTTGTTTTTGTTTTTGCATTTAGTCTACTTTCTGAGATAACTAAAGATTTGGTGATTTGATACAATGAAAGAGCATTTGGTGGAATAGATGGAGTGTTTTACTGTTTCAATATCTTCAGATGACATGTTGGGATATTTTCATTGACAATTGTTTTAAACTTATCTTATTCTATGTCATCAGGTTCAACTGAGCATCGTGGTTACGGATTCGTGCAGTTGTAAGTCAAATTCCGATCCACACTATTCTTTTCGTTATTGTTCTTGTAGTTCCTCTCTACTTGTCCAAACGTCTTGGTTCTACTCAGCCCAATGTTTCCTGTCTGACTATAGTATAGGTCTATGGAGGCACTTTAGTTTGATAATTGATACTTAATGGATGAGCTACTATTATTACCTGTGAAAATGTTACCTTTTACTTGGAAGCTAGAACTTCTGTCAATATGGAAAATGCTTTTGTTTCCTATATATGGATATACTAGATGCCTATATATATCTCTGTTCTTCGGATACTAAATCAGATTTAATATTTTCTTGCTTATGTTGTTCCGTTTTCTATGCAATTGATGGTGTTTTCAGTTTTGATTGTATTAATGGTTTGCTTGTCTATAAGTGTGGAGTGCGTTCAAAGCATCTATGCTTTTATTGAAGTTACTAATTTTCTTGCTTTATCTTGGAGTAAATTATCTTCTCCATTTGTAATTACAGCTTATCTACCCTCCTTTCACACAAGCCGTTTTTCGTAACTATCCACATATAGGATAATTCTTTTGTAATTTATTTCATCAATCTATGTTATGGTTTCTGTTTCTATAAGAAAAAACATTGAACCCGTTTTACACTTGAGGTTCAAGTTTTTCCAAACACATGCTATTGATTGTCTATCCTGCCAATACTGCTTGATGTTTGTCACAATGGACACTAATTTCTTATCCCTTTTTAATTCTTCTTGTTAAATTTCTATGTACCCACGGTTATCCTATGAAGGCTTTGATTTCTTAACTTCGCTGGATTCTTTGAATATGATTGCAGTGCTGTAGCAGAAGATGCGAATCAAGCAATACAGCAGAAGAATGGGCTGTCTATTGAAGGACGCAAAATTACTGTTAAACATGCAATGCATCGAGCTCCCCTTGAGCAGCGGCGGTCAAAAGAAAATCAAGGTTGATCATGAGATCTTGGAAGTGTCAAAATCCACATGTTGGAGGACTGCTGAAATTTTCTTTCTTTCCTTCTTTCTTCCATGTTTTCCCAGTTTCAGTAGAATGAGTGGGGGTCCTTAGGTTTCTTCCGTTATTTTCTTAACGCAGGTACTGCATCTAAGTCAAAAACTAACAAGGAAGGAGATACTTCTGAAAGGGAAGAACAAACAACTAACGAGGATGGAGATACTTCTAAAAGGGAAGAACAAGCAACTAACGAGGATGGAGATACTTCTGAAAAGGAAGAACAAACAACTAACGAGGATGGAGATGTTTCTAAAAGGGAAGAACAAACAACTTTAAATTCTGAGGGGAGGAAAGGTACTGATTTTTCATAAATATCTACTACTTTTTACCCAACATATCTGGCAATCTGTTTCTTATTGCTTTCTAATGATGTAACAGAGAGACATTTGAATGCTCAGAAATTGGCTCCACTTTCTAGTTATCTAGAGGATAAAGAGGGTTCTTCAGGAAAGCAAAGGTAATGAACATCTTTTTATTCTTTCTATATTTTGTTCTTTTTTCATGGATTTTGAATGCAAGCTCTGAAGTAATGGCTTGGATAATAAAGTAGTTGGTTTTCTTGACATCTTGTTTGTTTATTTGAAAAATAAGATTTCCTGTATTTTTCCTTCCACTTTCCTTTTCTTCCTGGTTCACGTTTGTGCATGCTACCTTCCATTAATTTCTCTTTTTTTTTTGGTTGTTAAGGATTGCAAGGACTGTTGTAGTCGGTGGTCTTCTTAATGCTGATATGGCTGAAGATGTTCACCGCCAAGCTAGAGAAGTTGGTGCTGTATGCTCTATTGTTTATCCTCTTCCCAGAAAAGAAGTTGAACAGCATGGTACACGAGAATCATTTTTTTTGTTTTTATGTACATGAGCAACTGTTATAATCTAGTATTAGTTTTTTGTTTGTATACATAAAAAGGGGAAACAGGATTAAAGCATCATTGTACCTGTTGCTACTGTTCTTGGTTTAGAGCATAGGTATTGGTTGGATTAATTTCTGTTGATTAGGTAGTCGATTGGATTTGCTTTAGTTATTATTCATGACGCCAGTTGCATATTAATGTGTGGCTATGATGTTTGACCAATTTTTTTTCAGTTGCCTGTTGTACTTTATAGATTGACTCTGCAAAGGTCTTAATAAATTATTATCTCTATTCATCAGGATATCTCATCAATAGTTTGAAATGAAATTTCAGGCCTTTTACGAGATGGATGCAAAATGGATGTTTCAGCTGTACTTTTTGCTAGTGTTAAGTCTGCACGTGCTGCTGTGACCATATTACATCAGAAAGAGATGCAAGGAGGTGTTGTGTGGGCCCGCCAACTGGGTGGGGAGGTGAATGAATATACATTAAACTTAGAAAACTATGAATAGACTTCACATGATCCTTACAAATAGCAGTCATGAGTGAACTGATTTTTTTTTGTATCTTTATTAAGTGTTCACACCTTTTTAAATGAGTTCTATATGCCCTGAAAATAATACAATGGCAGGGTCAATTAGAATGTCGAAGCTCTTTTAGTAGATTTAAATTGTTAGAGATCATAGATAGGAGTGTCTTAAAATTTTGTCAAAGTCATATATTTGAGTTATTGCAAAATCTTATGCTTTGATGTAAGAAATTCTATTCTGAATGATTTTTTAATGGGTTTCTTGTGTGTCTAAAGTCCTTAAATGTTTACCCGTAATGTTTTGAATCTTAGGTTTAAACTGCTTGCCAACATTAATGCATTTGTTTGGGTGGCCGTAATATTACTTTTATTATTATTCCCTATTATTCAGTCTATTTCTTAATTCCCTTTATATTATGAAAGCTAGGTTTCTTGATAAAAATGACATGTTCCAATTAAATCTGATTTCACTAGTTATTTGTTTTTAGTTATGTTGGATAAGTCTAAAACTTTCTGCATTTTCTTTGCAGGGGTCCAAAACTCAGAAATGGAAACTTATTGTCAGAAATCTTCCATTTCAGGTTTCATTTTACCCAATAAGCAATTATCATATTTTCTTACGTGGACAGGTTGACTAAGCAAGCTTATTTACACATTGATGCAGGCCAAAGAGAAAGAAATAAAGGATACCTTTTCATCTGCAGGATTTGTGTGGGACGTGATGGTGCCACATAGTTCAGACACAGGGTAATACTCTTACTTGAATATGCCCCCCCTTTATGTGTGCATTATTAACAGCCACCTGGTTTTATTTTTCAGATTATCGAAGGGTTTTGCGTTTGTCAAATTTACATGCAAGCAGGATGCTGAAAATGTATGTTTTTATTTTTTTTATTATTTTTTTTATTTTTTTTATATATATTTTTTTTTATATTGCCTCATTTAAAGAGTTTAGAATGATTGACATACATTCAAGTGATTTGACACGCTTCCCTTTTTTAGGCTATTAAAAAGTTCAATGGTCAAAAATTTGGTAAAAGGACAATAGCTGTGGACTGGGCCATTCCGAAGAAGATATATAGTTCAGGTGCTAATGCTCCAGTTGATTCAGATGAAGGTTAGTCATTGTATATTTAACCTAATCCAATTTCTTATGCACCCTTTACATGTTTGTTACACCTCTTTGGTTGTACCATCTTATCTTTGGTGTCTATACCTTATTTATTTCTCATTTTCTGCTCTCTGGTTTTAAGTTTATGGAATGCATTGTGGCTGTCTATCAGTTTGGTTATTATTTTTAATTTTTAATTGTTTTTATGAGAAACCAAGCTTCCATTAAGATCAAATAGAAAGAGTACACGGGAATACAAGAAAAACCGAAAGGTGCGCAACTAAACTAACAAGGGACTCCAATAAAAAAATAGATATAAAATAATACTTGAAGGATAATTACAAAAAGCTTTATACACAGAGGTGCAAAGAGAAGTGTGTATCTAGCAAGGGACCGCACCTCCCCAAGACCTCTCAATCCCCTTAAAAATTCTATTAGTTCTTAATTGTTAGAAAAGGAAACAAAAACAGGTCATTAATGAATGGAAATTGAAAGGATGTGGATGTAAAATCATCTGCCAGTTGGATTTGTGTGTCAACATTTCATGTTATATGAGTTATGGGTTATAGGTAATGTGGGTTTCAGGCACTACTAGGCACGAGGAAACTCCGATGGCAGGACAATGCCAATTTTCCTCGGGTGGGGGGCATTTCACAAATGGTATTTCTTTAGAAGAATTTAATAATGGCATACCATAATCTCAGTGGGCTCATCCTTGCTTTGTTATGAATAACCTATTTACCCTTCAGAAAATTTTCGATTAGACACTCTTTCTTTGTGCATTTCATCCCTATCCATATTGGTAGGGGGAAGATATTATAATGGGAAAGTATTTTGGTGTGGGTAAAAGGTATCTTCGATGGCTTTTAAGTCTTCTTAACACTGTTCTCTAACTATTTGAATTCTTATGGTCCTGTAAAATATTTGTTCTTGTAGTACTAACTGTTGACTGTAACGCATGAGCTTTGTTAGAAAAAAGAAATCCGTTTCTACTCTTCATAAAACACAAGATCTTGTTTTCAGGGGAAGAGACTGAAAATGACAGAGAAGGTAGCATTAGTAGTGATGATTTGGAAGTTGAAAATGCTGCTGTTCATAACAAATCTCAGCGCTCCGACAAAGATGAAGGTTCTTCAGAGGATTCGGAGAAAGAAGATATTTCCTCGGAGATTGATTTTGAAGGAGAAGCAGAAATTTCAAGAAAAGTACTTGAAAATCTAATTGCATCTTCGGCTAAAGAAGCTCTTCCTTCTCTCATTGATGGTAACCCACCATCTAAAGTGAACAAGGAGCCAGTTCTCGATTCATCAAAGAAGTCACCTGATATGTCTGATAAAGTATCAAATGGTCCCGAAAAGTTAAGTGAAGGCAAAACATCTATTCTTAAGCCAGTCGATGAAGAGGATTTGAAGAGAACAGTTTATATAGGCAATCTTCCATTTGATATTAATAATGAAGAAGTGAAACAGCGGTTTTCTGGATTCGGTGAAGTACTATCCTTCGTACCGGTCCTTCATCAAGTTACAAAGTATGGTTTATATTTCCTGATATATTTTTTTAATAACTCGATCCTCTGTAGTCTCTTTTTTTCTTTTGTTGACTCCTTCCTTGGCACAGACGACCTAGAGGCACTGGTTTTCTCAAGTTTAAAACGGCTGATGCTGCTACTGCTGCTGTTTCGTCTGCGAATGTTGCATCTGGTGTCGGAATATTTCTGAAGGGCAGGCAATTGAAAGTATTGAATGCTCTGGATAAGAAATCAGCTAATGAAAAGGAATTGGAGAAGTCAAAAAATGACAACCTTGACCACCGAAATCTTAACCTTGCACAGGTCTTTTTTCCTTCAATGCTTATAAAATTGTCCTTTTCTCTACAACCAAAAATTTCCAGCTTTTGTTTTCTTTATTTTATATCATGGTCGGATCTTTTTTCTCTTCAATACCACGGACTCGAACATTTTACAGGAAGGTATTATTCTCGAGGGAACTCCAGCTGCTGAGGGTGTTTCTGCTAGTGATATGATGAAACGTCAAAGGTACATATGTTCGTGTATATCAATTGCTATATTGTTGTTTCTGTATTAGCTTCTATGTTGACAGACGGTCGTCTATCTTTTAGTTGTATCTTAAATTTTATTGAGAAAGAAAAATAAAGAGTACAAGGATCTACTAAAATAGAGCCTCAAAGGAAGGAGGCAAACTAAAAGAGAAGTCCTCCAATCAAGAAAACAAGTCCTCAAGGGTAATTATAAAAGGACTTCACCATTATAAACCGCAGAGAGAATCTAATAAGGCCTCAAACATCACTCAAAGATGTCTCTCAAGCCCTCTAAAAGTTATGTTGTTCCTCTATCCTGAAAGATCGCATGGATAGCATACTCCCCCGGACTTGCCAGGTAGAGAAGGAACTTCTCAATCATCTCTCTACAACCCCTATGTCTAGACAAGCATTAAGCTAAACCTCTTAAGGAAATAACTCCAAAGGTATGATCAAGGTCCTCAACTGATCACCTACAAAGAATGTTACACAATGGTCCAATCGAGTTGGGTGGGTACCTTCTCGAAACCTGATCCAAGGTGTTTAGCTCTTTGATGGAGAATTTGCCACAAAAAACTTAACCTTCGTTGGAGTTTTCACCTTTCATGATGAGGCCAAGACAAAACCAGTCGAGGGAGAGGGATTGAGCAAACAAAGGAAGAATGATTTACAAAAAGACGTTTGGAAGGATAGGACTCCAGATTTGAACATCCTTTCTCTTTGGAATATAACAATACTCTCCAATCAAAGAGGTGGGCGGGGGGGGGGGGGGGGGGGGGCACAATAACCATCCTTGTCCTTTCCCATCGAACAATGGAGTACAAAATTTCGAAATGGTCAAACAAGAGGTCAAAGAATGAAGCAAAACAACAACCACTGAATCGTTCCTCACTGAAGATAAATTGTGCAAACGAGGAAATAGGGAGTAGAGGGGTCTATCTCTCAATCACTTATCCTCCTAGAAAAAAGTATCATTCCCATCAACCACTAAACAATGGACATAAAGAGGAAAGAAAGGAAGCCCCTCAGCAATACCTTTCCGTCCAACCTTCCCCCGTGCTATTCATTCAAAGGGGAGCAGCCCATGTTAGGACCTTATGCCACAAGGAATTGGACTCATAATAGAAACAACATTAGAACTGTTAGCATTACATGGGCTTATAACATGTTTATTATTTACTTCAGTGTTAGTTTCTAATGTGAATACATTGTACTTAATATTTATGTTAGATTATTTTTAGAAGTATAAATATTTTTTCCTTTTCCCTTTAGAAAGCCCAAAACTGTAACGTTTTTATTTTGTGGCTAACCGAATAACATTTCGCCCATCATACGTGCAGGCTAGAAAAGAAACGAATGACTAAGCTTCAATCTCCGAATTTTCATGTTTCAAGAACTAGGCTCGTTATACACAATTTACCAAAATCAATGAAAGAAAAGGAACTTCAAAAACTTTGCATCGAAGCTGTTACCTCGCGAGCTACAAAGCAAAAACCTGTGATTCGCCAGGTTTGACCTTTCCAGAAATGTAGGAAATCCATTCGATGTTATCGATATTTTTTCCCTAACTTTTAATCTTATTTTGCAGATTAAATTCTTGAAGGATGTGAAGAAAGGAAAGGAACTGACAAAAAATTACTCTTGTGGAGTTGCTTTCGTCGAGTTTTCTGAGCATCAGCACGCCCTTGTAGCCCTGCGAGTTCTCAACAACAATCCAGGTAATAGTTTCTCTCATTCGATAATCCTTAATTCTCGACGCCTCTAAAATTAGTGTGCCGAGGCAGCCCTTGAGAAAAAATAATGGTTCTTCGAACGCTGGAACCTACCTTGTGGTTTTAATAGGAGCAGTAGCATAGTTTGCACCTTATCCTAATTCTAAAATAAATATCTGGTTTCTTGTAGAAACTTTTGGCCCTGTGAATCGCCCGATCGTAGAATTCGCTGTAGACAATGTTCAGATGTTGAAGCTACGGAAAGCAAAGTTACAAGCTTCGTATCAGGACAATACTGCCAACGTTCCGAAATCACTGCATCGTAATGCTGATACAAATGCTGGGGATATCCATTCAAACAAGACGAACTCCAGAAAAAGGAAAGCAACAGGCAATAATCGTCCAGTGAAGGAGAAAAATTGCAACGAAAACAAAAATGGCGATCATGTATCCAATGATATGGCGATGGAAGAAAGTAGAGACAGAAAAAAGAGGAAAACTCGTCCAGAAAGTGGTAATAATACAAACGAGTCACCGAAACAAAAACCAGAAGGACGAAGATCAATGCCTGAAAAATCGAGCAAGAGATCGGCACCCATGGATACTGTTAAAACAAAAGCTTCTCAGGAGGCTGATGTACAACACAAAAAGAAGGCAAAACATCAAGTAGAGCAGCACCAGAGGAAGAGGGCAAAGAAAAACAAGTTACCAGTAGGACAGGACGCTGTTGATAAACTCGATAAACTTATCGAACAATATCGATCCAAGTTCTCGCAGAAGAGTTCGGATTCAGCCGATGGTGAAAAGAAAGGCTCTAAACAGGTTAGAAGATGGTTCCAATCATGAACAGGTTAGAAAATTTTGCAGGATGGCTACGATTGTTCCTTCGATCATTTGATGTCACACACACTTCTTGTTTGTTTTCTATTGCTATGAAATATGTATGGATAAAGCTTAATCGCATAGGAAGTGTAACATATAGTATTTATTACTTCCATATTTTGTATTGGATTTTTTTTTAAAAAAACATTGATTAATCATTTAGTGGGAAATTTAAATTATCTTATTTAAAATTTAAA

mRNA sequence

AATTCGGCAGTTTTTTTGCAGTCCGTGGAAAGCTTTCAAGCAGCCATGGGGAAGAACAAGAGGTTTAAGGACGGTGGCGAGAAGGGAGCCGCCGCCGGCGATCACTGCCCTTCCAAGGTTTTTGTCAAGAACTTGCCGTACTCGTTCACCAACTCACAGCTTGAAGAAACATTCAGTGATGTTGGACCGGTCCGGCGGTGCTTCATGGTTACGCAGAAGGGTTCAACTGAGCATCGTGGTTACGGATTCGTGCAGTTTGCTGTAGCAGAAGATGCGAATCAAGCAATACAGCAGAAGAATGGGCTGTCTATTGAAGGACGCAAAATTACTGTTAAACATGCAATGCATCGAGCTCCCCTTGAGCAGCGGCGGTCAAAAGAAAATCAAGGTACTGCATCTAAGTCAAAAACTAACAAGGAAGGAGATACTTCTGAAAGGGAAGAACAAACAACTAACGAGGATGGAGATACTTCTAAAAGGGAAGAACAAGCAACTAACGAGGATGGAGATACTTCTGAAAAGGAAGAACAAACAACTAACGAGGATGGAGATGTTTCTAAAAGGGAAGAACAAACAACTTTAAATTCTGAGGGGAGGAAAGAGAGACATTTGAATGCTCAGAAATTGGCTCCACTTTCTAGTTATCTAGAGGATAAAGAGGGTTCTTCAGGAAAGCAAAGGATTGCAAGGACTGTTGTAGTCGGTGGTCTTCTTAATGCTGATATGGCTGAAGATGTTCACCGCCAAGCTAGAGAAGTTGGTGCTGTATGCTCTATTGTTTATCCTCTTCCCAGAAAAGAAGTTGAACAGCATGGCCTTTTACGAGATGGATGCAAAATGGATGTTTCAGCTGTACTTTTTGCTAGTGTTAAGTCTGCACGTGCTGCTGTGACCATATTACATCAGAAAGAGATGCAAGGAGGTGTTGTGTGGGCCCGCCAACTGGGTGGGGAGGGGTCCAAAACTCAGAAATGGAAACTTATTGTCAGAAATCTTCCATTTCAGGCCAAAGAGAAAGAAATAAAGGATACCTTTTCATCTGCAGGATTTGTGTGGGACGTGATGGTGCCACATAGTTCAGACACAGGATTATCGAAGGGTTTTGCGTTTGTCAAATTTACATGCAAGCAGGATGCTGAAAATGCTATTAAAAAGTTCAATGGTCAAAAATTTGGTAAAAGGACAATAGCTGTGGACTGGGCCATTCCGAAGAAGATATATAGTTCAGGTGCTAATGCTCCAGTTGATTCAGATGAAGGGGAAGAGACTGAAAATGACAGAGAAGGTAGCATTAGTAGTGATGATTTGGAAGTTGAAAATGCTGCTGTTCATAACAAATCTCAGCGCTCCGACAAAGATGAAGGTTCTTCAGAGGATTCGGAGAAAGAAGATATTTCCTCGGAGATTGATTTTGAAGGAGAAGCAGAAATTTCAAGAAAAGTACTTGAAAATCTAATTGCATCTTCGGCTAAAGAAGCTCTTCCTTCTCTCATTGATGGTAACCCACCATCTAAAGTGAACAAGGAGCCAGTTCTCGATTCATCAAAGAAGTCACCTGATATGTCTGATAAAGTATCAAATGGTCCCGAAAAGTTAAGTGAAGGCAAAACATCTATTCTTAAGCCAGTCGATGAAGAGGATTTGAAGAGAACAGTTTATATAGGCAATCTTCCATTTGATATTAATAATGAAGAAGTGAAACAGCGGTTTTCTGGATTCGGTGAAGTACTATCCTTCGTACCGGTCCTTCATCAAGTTACAAAACGACCTAGAGGCACTGGTTTTCTCAAGTTTAAAACGGCTGATGCTGCTACTGCTGCTGTTTCGTCTGCGAATGTTGCATCTGGTGTCGGAATATTTCTGAAGGGCAGGCAATTGAAAGTATTGAATGCTCTGGATAAGAAATCAGCTAATGAAAAGGAATTGGAGAAGTCAAAAAATGACAACCTTGACCACCGAAATCTTAACCTTGCACAGGAAGGTATTATTCTCGAGGGAACTCCAGCTGCTGAGGGTGTTTCTGCTAGTGATATGATGAAACGTCAAAGGCTAGAAAAGAAACGAATGACTAAGCTTCAATCTCCGAATTTTCATGTTTCAAGAACTAGGCTCGTTATACACAATTTACCAAAATCAATGAAAGAAAAGGAACTTCAAAAACTTTGCATCGAAGCTGTTACCTCGCGAGCTACAAAGCAAAAACCTGTGATTCGCCAGATTAAATTCTTGAAGGATGTGAAGAAAGGAAAGGAACTGACAAAAAATTACTCTTGTGGAGTTGCTTTCGTCGAGTTTTCTGAGCATCAGCACGCCCTTGTAGCCCTGCGAGTTCTCAACAACAATCCAGAAACTTTTGGCCCTGTGAATCGCCCGATCGTAGAATTCGCTGTAGACAATGTTCAGATGTTGAAGCTACGGAAAGCAAAGTTACAAGCTTCGTATCAGGACAATACTGCCAACGTTCCGAAATCACTGCATCGTAATGCTGATACAAATGCTGGGGATATCCATTCAAACAAGACGAACTCCAGAAAAAGGAAAGCAACAGGCAATAATCGTCCAGTGAAGGAGAAAAATTGCAACGAAAACAAAAATGGCGATCATGTATCCAATGATATGGCGATGGAAGAAAGTAGAGACAGAAAAAAGAGGAAAACTCGTCCAGAAAGTGGTAATAATACAAACGAGTCACCGAAACAAAAACCAGAAGGACGAAGATCAATGCCTGAAAAATCGAGCAAGAGATCGGCACCCATGGATACTGTTAAAACAAAAGCTTCTCAGGAGGCTGATGTACAACACAAAAAGAAGGCAAAACATCAAGTAGAGCAGCACCAGAGGAAGAGGGCAAAGAAAAACAAGTTACCAGTAGGACAGGACGCTGTTGATAAACTCGATAAACTTATCGAACAATATCGATCCAAGTTCTCGCAGAAGAGTTCGGATTCAGCCGATGGTGAAAAGAAAGGCTCTAAACAGGTTAGAAGATGGTTCCAATCATGAACAGGTTAGAAAATTTTGCAGGATGGCTACGATTGTTCCTTCGATCATTTGATGTCACACACACTTCTTGTTTGTTTTCTATTGCTATGAAATATGTATGGATAAAGCTTAATCGCATAGGAAGTGTAACATATAGTATTTATTACTTCCATATTTTGTATTGGATTTTTTTTTAAAAAAACATTGATTAATCATTTAGTGGGAAATTTAAATTATCTTATTTAAAATTTAAA

Coding sequence (CDS)

AATTCGGCAGTTTTTTTGCAGTCCGTGGAAAGCTTTCAAGCAGCCATGGGGAAGAACAAGAGGTTTAAGGACGGTGGCGAGAAGGGAGCCGCCGCCGGCGATCACTGCCCTTCCAAGGTTTTTGTCAAGAACTTGCCGTACTCGTTCACCAACTCACAGCTTGAAGAAACATTCAGTGATGTTGGACCGGTCCGGCGGTGCTTCATGGTTACGCAGAAGGGTTCAACTGAGCATCGTGGTTACGGATTCGTGCAGTTTGCTGTAGCAGAAGATGCGAATCAAGCAATACAGCAGAAGAATGGGCTGTCTATTGAAGGACGCAAAATTACTGTTAAACATGCAATGCATCGAGCTCCCCTTGAGCAGCGGCGGTCAAAAGAAAATCAAGGTACTGCATCTAAGTCAAAAACTAACAAGGAAGGAGATACTTCTGAAAGGGAAGAACAAACAACTAACGAGGATGGAGATACTTCTAAAAGGGAAGAACAAGCAACTAACGAGGATGGAGATACTTCTGAAAAGGAAGAACAAACAACTAACGAGGATGGAGATGTTTCTAAAAGGGAAGAACAAACAACTTTAAATTCTGAGGGGAGGAAAGAGAGACATTTGAATGCTCAGAAATTGGCTCCACTTTCTAGTTATCTAGAGGATAAAGAGGGTTCTTCAGGAAAGCAAAGGATTGCAAGGACTGTTGTAGTCGGTGGTCTTCTTAATGCTGATATGGCTGAAGATGTTCACCGCCAAGCTAGAGAAGTTGGTGCTGTATGCTCTATTGTTTATCCTCTTCCCAGAAAAGAAGTTGAACAGCATGGCCTTTTACGAGATGGATGCAAAATGGATGTTTCAGCTGTACTTTTTGCTAGTGTTAAGTCTGCACGTGCTGCTGTGACCATATTACATCAGAAAGAGATGCAAGGAGGTGTTGTGTGGGCCCGCCAACTGGGTGGGGAGGGGTCCAAAACTCAGAAATGGAAACTTATTGTCAGAAATCTTCCATTTCAGGCCAAAGAGAAAGAAATAAAGGATACCTTTTCATCTGCAGGATTTGTGTGGGACGTGATGGTGCCACATAGTTCAGACACAGGATTATCGAAGGGTTTTGCGTTTGTCAAATTTACATGCAAGCAGGATGCTGAAAATGCTATTAAAAAGTTCAATGGTCAAAAATTTGGTAAAAGGACAATAGCTGTGGACTGGGCCATTCCGAAGAAGATATATAGTTCAGGTGCTAATGCTCCAGTTGATTCAGATGAAGGGGAAGAGACTGAAAATGACAGAGAAGGTAGCATTAGTAGTGATGATTTGGAAGTTGAAAATGCTGCTGTTCATAACAAATCTCAGCGCTCCGACAAAGATGAAGGTTCTTCAGAGGATTCGGAGAAAGAAGATATTTCCTCGGAGATTGATTTTGAAGGAGAAGCAGAAATTTCAAGAAAAGTACTTGAAAATCTAATTGCATCTTCGGCTAAAGAAGCTCTTCCTTCTCTCATTGATGGTAACCCACCATCTAAAGTGAACAAGGAGCCAGTTCTCGATTCATCAAAGAAGTCACCTGATATGTCTGATAAAGTATCAAATGGTCCCGAAAAGTTAAGTGAAGGCAAAACATCTATTCTTAAGCCAGTCGATGAAGAGGATTTGAAGAGAACAGTTTATATAGGCAATCTTCCATTTGATATTAATAATGAAGAAGTGAAACAGCGGTTTTCTGGATTCGGTGAAGTACTATCCTTCGTACCGGTCCTTCATCAAGTTACAAAACGACCTAGAGGCACTGGTTTTCTCAAGTTTAAAACGGCTGATGCTGCTACTGCTGCTGTTTCGTCTGCGAATGTTGCATCTGGTGTCGGAATATTTCTGAAGGGCAGGCAATTGAAAGTATTGAATGCTCTGGATAAGAAATCAGCTAATGAAAAGGAATTGGAGAAGTCAAAAAATGACAACCTTGACCACCGAAATCTTAACCTTGCACAGGAAGGTATTATTCTCGAGGGAACTCCAGCTGCTGAGGGTGTTTCTGCTAGTGATATGATGAAACGTCAAAGGCTAGAAAAGAAACGAATGACTAAGCTTCAATCTCCGAATTTTCATGTTTCAAGAACTAGGCTCGTTATACACAATTTACCAAAATCAATGAAAGAAAAGGAACTTCAAAAACTTTGCATCGAAGCTGTTACCTCGCGAGCTACAAAGCAAAAACCTGTGATTCGCCAGATTAAATTCTTGAAGGATGTGAAGAAAGGAAAGGAACTGACAAAAAATTACTCTTGTGGAGTTGCTTTCGTCGAGTTTTCTGAGCATCAGCACGCCCTTGTAGCCCTGCGAGTTCTCAACAACAATCCAGAAACTTTTGGCCCTGTGAATCGCCCGATCGTAGAATTCGCTGTAGACAATGTTCAGATGTTGAAGCTACGGAAAGCAAAGTTACAAGCTTCGTATCAGGACAATACTGCCAACGTTCCGAAATCACTGCATCGTAATGCTGATACAAATGCTGGGGATATCCATTCAAACAAGACGAACTCCAGAAAAAGGAAAGCAACAGGCAATAATCGTCCAGTGAAGGAGAAAAATTGCAACGAAAACAAAAATGGCGATCATGTATCCAATGATATGGCGATGGAAGAAAGTAGAGACAGAAAAAAGAGGAAAACTCGTCCAGAAAGTGGTAATAATACAAACGAGTCACCGAAACAAAAACCAGAAGGACGAAGATCAATGCCTGAAAAATCGAGCAAGAGATCGGCACCCATGGATACTGTTAAAACAAAAGCTTCTCAGGAGGCTGATGTACAACACAAAAAGAAGGCAAAACATCAAGTAGAGCAGCACCAGAGGAAGAGGGCAAAGAAAAACAAGTTACCAGTAGGACAGGACGCTGTTGATAAACTCGATAAACTTATCGAACAATATCGATCCAAGTTCTCGCAGAAGAGTTCGGATTCAGCCGATGGTGAAAAGAAAGGCTCTAAACAGGTTAGAAGATGGTTCCAATCATGA

Protein sequence

NSAVFLQSVESFQAAMGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKSKTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLNSEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGAVCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQLGGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTCKQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETENDREGSISSDDLEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALPSLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIGNLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVASGVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSASDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEFAVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGNNRPVKEKNCNENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQKPEGRRSMPEKSSKRSAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQDAVDKLDKLIEQYRSKFSQKSSDSADGEKKGSKQVRRWFQS

Homology

[Close]

BLAST of Carg19396 vs. NCBI nr
Match: KAG7011721.1 (RNA-binding protein 28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1879.0 bits (4866), Expect = 0.0e+00
Identity = 1000/1000 (100.00%), Postives = 1000/1000 (100.00%), Query Frame = 0


Query: 1    NSAVFLQSVESFQAAMGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSD 60
            NSAVFLQSVESFQAAMGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSD
Sbjct: 1    NSAVFLQSVESFQAAMGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSD 60

Query: 61   VGPVRRCFMVTQKGSTEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPL 120
            VGPVRRCFMVTQKGSTEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPL
Sbjct: 61   VGPVRRCFMVTQKGSTEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPL 120

Query: 121  EQRRSKENQGTASKSKTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTN 180
            EQRRSKENQGTASKSKTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTN
Sbjct: 121  EQRRSKENQGTASKSKTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTN 180

Query: 181  EDGDVSKREEQTTLNSEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNA 240
            EDGDVSKREEQTTLNSEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNA
Sbjct: 181  EDGDVSKREEQTTLNSEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNA 240

Query: 241  DMAEDVHRQAREVGAVCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTIL 300
            DMAEDVHRQAREVGAVCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTIL
Sbjct: 241  DMAEDVHRQAREVGAVCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTIL 300

Query: 301  HQKEMQGGVVWARQLGGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSS 360
            HQKEMQGGVVWARQLGGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSS
Sbjct: 301  HQKEMQGGVVWARQLGGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSS 360

Query: 361  DTGLSKGFAFVKFTCKQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEG 420
            DTGLSKGFAFVKFTCKQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEG
Sbjct: 361  DTGLSKGFAFVKFTCKQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEG 420

Query: 421  EETENDREGSISSDDLEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRK 480
            EETENDREGSISSDDLEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRK
Sbjct: 421  EETENDREGSISSDDLEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRK 480

Query: 481  VLENLIASSAKEALPSLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSIL 540
            VLENLIASSAKEALPSLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSIL
Sbjct: 481  VLENLIASSAKEALPSLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSIL 540

Query: 541  KPVDEEDLKRTVYIGNLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKT 600
            KPVDEEDLKRTVYIGNLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKT
Sbjct: 541  KPVDEEDLKRTVYIGNLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKT 600

Query: 601  ADAATAAVSSANVASGVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQE 660
            ADAATAAVSSANVASGVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQE
Sbjct: 601  ADAATAAVSSANVASGVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQE 660

Query: 661  GIILEGTPAAEGVSASDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQK 720
            GIILEGTPAAEGVSASDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQK
Sbjct: 661  GIILEGTPAAEGVSASDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQK 720

Query: 721  LCIEAVTSRATKQKPVIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNN 780
            LCIEAVTSRATKQKPVIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNN
Sbjct: 721  LCIEAVTSRATKQKPVIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNN 780

Query: 781  NPETFGPVNRPIVEFAVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNK 840
            NPETFGPVNRPIVEFAVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNK
Sbjct: 781  NPETFGPVNRPIVEFAVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNK 840

Query: 841  TNSRKRKATGNNRPVKEKNCNENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQ 900
            TNSRKRKATGNNRPVKEKNCNENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQ
Sbjct: 841  TNSRKRKATGNNRPVKEKNCNENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQ 900

Query: 901  KPEGRRSMPEKSSKRSAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQD 960
            KPEGRRSMPEKSSKRSAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQD
Sbjct: 901  KPEGRRSMPEKSSKRSAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQD 960

Query: 961  AVDKLDKLIEQYRSKFSQKSSDSADGEKKGSKQVRRWFQS 1001
            AVDKLDKLIEQYRSKFSQKSSDSADGEKKGSKQVRRWFQS
Sbjct: 961  AVDKLDKLIEQYRSKFSQKSSDSADGEKKGSKQVRRWFQS 1000

[Close]

BLAST of Carg19396 vs. NCBI nr
Match: KAG6572055.1 (Chromatin remodeling protein SHL, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1825.8 bits (4728), Expect = 0.0e+00
Identity = 973/978 (99.49%), Postives = 976/978 (99.80%), Query Frame = 0


Query: 16  MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGS 75
           MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGS
Sbjct: 1   MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGS 60

Query: 76  TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKS 135
           TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKS
Sbjct: 61  TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKS 120

Query: 136 KTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLN 195
           KTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTL+
Sbjct: 121 KTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLD 180

Query: 196 SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA 255
           SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA
Sbjct: 181 SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA 240

Query: 256 VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 315
           VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVT+LHQKEMQGGVVWARQL
Sbjct: 241 VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTVLHQKEMQGGVVWARQL 300

Query: 316 GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 375
           GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC
Sbjct: 301 GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 360

Query: 376 KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETENDREGSISSDD 435
           KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETENDREGSISSDD
Sbjct: 361 KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETENDREGSISSDD 420

Query: 436 LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP 495
           LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIA+SAKEALP
Sbjct: 421 LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIATSAKEALP 480

Query: 496 SLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG 555
           SLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG
Sbjct: 481 SLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG 540

Query: 556 NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 615
           NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS
Sbjct: 541 NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 600

Query: 616 GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA 675
           GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA
Sbjct: 601 GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA 660

Query: 676 SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 735
           SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP
Sbjct: 661 SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 720

Query: 736 VIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 795
           VIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF
Sbjct: 721 VIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 780

Query: 796 AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGNNRPV 855
           AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGNNRPV
Sbjct: 781 AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGNNRPV 840

Query: 856 KEKNCNENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQKPEGRRSMPEKSSKR 915
           KEKN NENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQKPEGRRSMPEKSSKR
Sbjct: 841 KEKNRNENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQKPEGRRSMPEKSSKR 900

Query: 916 SAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQDAVDKLDKLIEQYRSK 975
           SAPMDTVKTKASQEADVQHKKKAKHQVEQ QRKRAKKNKLPVGQDAVDKLDKLIEQYRSK
Sbjct: 901 SAPMDTVKTKASQEADVQHKKKAKHQVEQQQRKRAKKNKLPVGQDAVDKLDKLIEQYRSK 960

Query: 976 FSQKSSDSADGEKKGSKQ 994
           FSQKSSDSADGEKKGSKQ
Sbjct: 961 FSQKSSDSADGEKKGSKQ 978

[Close]

BLAST of Carg19396 vs. NCBI nr
Match: XP_022953093.1 (RNA-binding protein 28 [Cucurbita moschata])

HSP 1 Score: 1818.1 bits (4708), Expect = 0.0e+00
Identity = 970/985 (98.48%), Postives = 974/985 (98.88%), Query Frame = 0


Query: 16   MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGS 75
            MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSF NSQLEETFSDVGPVRRCFMVTQKGS
Sbjct: 1    MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFANSQLEETFSDVGPVRRCFMVTQKGS 60

Query: 76   TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKS 135
            TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKS
Sbjct: 61   TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKS 120

Query: 136  KTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLN 195
            KTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLN
Sbjct: 121  KTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLN 180

Query: 196  SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA 255
            SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA
Sbjct: 181  SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA 240

Query: 256  VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 315
            VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL
Sbjct: 241  VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 300

Query: 316  GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 375
            GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC
Sbjct: 301  GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 360

Query: 376  KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETENDREGSISSDD 435
            KQDAENAIKKFNG+KFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETE DREGSISSDD
Sbjct: 361  KQDAENAIKKFNGKKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETEKDREGSISSDD 420

Query: 436  LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP 495
            LEVENAAVHNKSQRSDKD  SSEDSEKED+SSEIDFEGEAEISRKVLENLIASSAKEALP
Sbjct: 421  LEVENAAVHNKSQRSDKDGSSSEDSEKEDVSSEIDFEGEAEISRKVLENLIASSAKEALP 480

Query: 496  SLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG 555
            SLIDGNPPS VNKEPV DSSKKS DMSDKVSNGPEKLSE KTSILKPVDEEDLKRTVYIG
Sbjct: 481  SLIDGNPPSNVNKEPVFDSSKKSSDMSDKVSNGPEKLSESKTSILKPVDEEDLKRTVYIG 540

Query: 556  NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 615
            NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS
Sbjct: 541  NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 600

Query: 616  GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA 675
            GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA
Sbjct: 601  GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA 660

Query: 676  SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 735
            SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP
Sbjct: 661  SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 720

Query: 736  VIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 795
            VIRQIKFLKDVKKGK LTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF
Sbjct: 721  VIRQIKFLKDVKKGKVLTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 780

Query: 796  AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGNNRPV 855
            AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATG+NRPV
Sbjct: 781  AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGDNRPV 840

Query: 856  KEKNCNENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQKPEGRRSMPEKSSKR 915
            KEKN NENKNGDHVSNDMAMEESRDRKK+KTRPESGNNTNES KQKPEGRRSMPEKSSKR
Sbjct: 841  KEKNRNENKNGDHVSNDMAMEESRDRKKKKTRPESGNNTNESLKQKPEGRRSMPEKSSKR 900

Query: 916  SAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQDAVDKLDKLIEQYRSK 975
            SAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQDAVDKLDKLIEQYRSK
Sbjct: 901  SAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQDAVDKLDKLIEQYRSK 960

Query: 976  FSQKSSDSADGEKKGSKQVRRWFQS 1001
            FSQKSSDSADGEKKGSKQVRRWFQS
Sbjct: 961  FSQKSSDSADGEKKGSKQVRRWFQS 985

[Close]

BLAST of Carg19396 vs. NCBI nr
Match: XP_023511705.1 (RNA-binding protein 28 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1813.9 bits (4697), Expect = 0.0e+00
Identity = 967/985 (98.17%), Postives = 974/985 (98.88%), Query Frame = 0


Query: 16   MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGS 75
            MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGS
Sbjct: 1    MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGS 60

Query: 76   TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKS 135
            TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTA KS
Sbjct: 61   TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTAFKS 120

Query: 136  KTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLN 195
            KTNKEGDTSEREEQTTNEDGDTSKREEQ TNEDGDTSEKEEQTTNEDGDVSKREEQTTLN
Sbjct: 121  KTNKEGDTSEREEQTTNEDGDTSKREEQTTNEDGDTSEKEEQTTNEDGDVSKREEQTTLN 180

Query: 196  SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA 255
            SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA
Sbjct: 181  SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA 240

Query: 256  VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 315
            VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL
Sbjct: 241  VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 300

Query: 316  GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 375
            GGEGSKTQKWKLIVRNLPFQAKEK+IKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC
Sbjct: 301  GGEGSKTQKWKLIVRNLPFQAKEKQIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 360

Query: 376  KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETENDREGSISSDD 435
            KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETE DREGSISSDD
Sbjct: 361  KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETEKDREGSISSDD 420

Query: 436  LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP 495
            LEVENAAVHNKSQRSD+DEGSSEDSEKEDISSEIDFEGEAEISRK+LENLIASSAKEALP
Sbjct: 421  LEVENAAVHNKSQRSDEDEGSSEDSEKEDISSEIDFEGEAEISRKILENLIASSAKEALP 480

Query: 496  SLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG 555
            SLIDGNPPSKVNKEPVLDSSKKS DMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG
Sbjct: 481  SLIDGNPPSKVNKEPVLDSSKKSSDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG 540

Query: 556  NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 615
            NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS
Sbjct: 541  NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 600

Query: 616  GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA 675
            GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDN+DHRNLNLAQEGIILEGTPAAEGVSA
Sbjct: 601  GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNVDHRNLNLAQEGIILEGTPAAEGVSA 660

Query: 676  SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 735
            SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP
Sbjct: 661  SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 720

Query: 736  VIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 795
            VIRQIKFLKDVKKGK LTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF
Sbjct: 721  VIRQIKFLKDVKKGKVLTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 780

Query: 796  AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGNNRPV 855
            AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATG+NRPV
Sbjct: 781  AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGDNRPV 840

Query: 856  KEKNCNENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQKPEGRRSMPEKSSKR 915
            KEKN NENKNG+HVSNDMAMEESRDRKKRK RPESGNNTNES KQKPEGRRSMPEKSSKR
Sbjct: 841  KEKNRNENKNGNHVSNDMAMEESRDRKKRKMRPESGNNTNESQKQKPEGRRSMPEKSSKR 900

Query: 916  SAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQDAVDKLDKLIEQYRSK 975
            SAPMDTVK KASQEADVQHKKKAKHQV+Q QRKRAKKNKLPVGQDAVDKLDKLIEQYRSK
Sbjct: 901  SAPMDTVKIKASQEADVQHKKKAKHQVDQQQRKRAKKNKLPVGQDAVDKLDKLIEQYRSK 960

Query: 976  FSQKSSDSADGEKKGSKQVRRWFQS 1001
            FSQKSSD ADGEKKGSKQVRRWFQS
Sbjct: 961  FSQKSSDPADGEKKGSKQVRRWFQS 985

[Close]

BLAST of Carg19396 vs. NCBI nr
Match: XP_022975201.1 (RNA-binding protein 28 isoform X2 [Cucurbita maxima])

HSP 1 Score: 1807.7 bits (4681), Expect = 0.0e+00
Identity = 967/985 (98.17%), Postives = 972/985 (98.68%), Query Frame = 0


Query: 16   MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGS 75
            MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQ+GS
Sbjct: 1    MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQRGS 60

Query: 76   TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKS 135
            TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQG ASKS
Sbjct: 61   TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGIASKS 120

Query: 136  KTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLN 195
            KTNKEGDTSEREEQTTNEDGDTSKREEQ TNEDGDTSEKEEQTTNEDGD+SKREEQTTLN
Sbjct: 121  KTNKEGDTSEREEQTTNEDGDTSKREEQTTNEDGDTSEKEEQTTNEDGDISKREEQTTLN 180

Query: 196  SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA 255
            SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQA+EVGA
Sbjct: 181  SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAKEVGA 240

Query: 256  VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 315
            VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL
Sbjct: 241  VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 300

Query: 316  GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 375
            GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC
Sbjct: 301  GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 360

Query: 376  KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETENDREGSISSDD 435
            KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETE DREGSISSDD
Sbjct: 361  KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETEKDREGSISSDD 420

Query: 436  LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP 495
            LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP
Sbjct: 421  LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP 480

Query: 496  SLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG 555
            SLIDGNPPSKVNKEPVLDSSKKS DMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG
Sbjct: 481  SLIDGNPPSKVNKEPVLDSSKKSSDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG 540

Query: 556  NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 615
            NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS
Sbjct: 541  NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 600

Query: 616  GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA 675
            GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA
Sbjct: 601  GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA 660

Query: 676  SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 735
            SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP
Sbjct: 661  SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 720

Query: 736  VIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 795
            VIRQIKFLKDVKKGK LTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF
Sbjct: 721  VIRQIKFLKDVKKGKVLTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 780

Query: 796  AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGNNRPV 855
            AVDNVQMLKLRKAKLQASYQDNTANVPK+LHRNADTNAGDIHSNKTNSRKRKATG+NRPV
Sbjct: 781  AVDNVQMLKLRKAKLQASYQDNTANVPKALHRNADTNAGDIHSNKTNSRKRKATGDNRPV 840

Query: 856  KEKNCNENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQKPEGRRSMPEKSSKR 915
            KEKN NENKNGDHVSNDMAMEESR RKKRKTRPESG N NES KQKPEGRRSMPEK SKR
Sbjct: 841  KEKNRNENKNGDHVSNDMAMEESRARKKRKTRPESG-NINESQKQKPEGRRSMPEKLSKR 900

Query: 916  SAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQDAVDKLDKLIEQYRSK 975
            SAPMDTVKTKASQEADVQHKKKAKHQVEQ QRKRAKKNKLPVGQDAVDKLDKLIEQYRSK
Sbjct: 901  SAPMDTVKTKASQEADVQHKKKAKHQVEQQQRKRAKKNKLPVGQDAVDKLDKLIEQYRSK 960

Query: 976  FSQKSSDSADGEKKGSKQVRRWFQS 1001
            FSQKSSD ADGEKKGSKQVRRWFQS
Sbjct: 961  FSQKSSDPADGEKKGSKQVRRWFQS 984

[Close]

BLAST of Carg19396 vs. ExPASy Swiss-Prot
Match: Q8CGC6 (RNA-binding protein 28 OS=Mus musculus OX=10090 GN=Rbm28 PE=1 SV=4)

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-54
Identity = 239/795 (30.06%), Postives = 375/795 (47.17%), Query Frame = 0


Query: 231  TVVVGGLLNADMAEDVHRQAREVGAV--CSIVYPLPRKEVEQHGLLRDGCKMDVSAVL-- 290
            T+ VG L  +  ++ +     +VG V  C +V     K     G +      DV   L  
Sbjct: 5    TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64

Query: 291  FASVKSARAAVTILHQKEMQGGVVWARQLGGEGSKTQ-----------KWKLIVRNLPFQ 350
              + +  +  VT+  +K         +    E  K +           K +LI+RNL F+
Sbjct: 65   ITTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFK 124

Query: 351  AKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTCKQDAENAIKKFNGQKFGKRT 410
              E ++K  F+  G V +V +P   D G  +GFAFV+F    +A  A+K  N ++   RT
Sbjct: 125  CSEDDLKAVFTHYGTVLEVNIPKKPD-GKMRGFAFVQFKNLLEAGKALKGANMKEIKGRT 184

Query: 411  IAVDWAIPKKIYSSGANAPVDSDEGEETENDREGSISSDDLEVENAAVHNKSQRSDKDEG 470
            +AVDWA+ K  Y    +A   S  G +  +DR+   S      +N  V  + Q  D D+ 
Sbjct: 185  VAVDWAVAKDKYKDAQHA---SAPGVKKSSDRKPKESGK----KNCRV--EEQVEDSDDE 244

Query: 471  SSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALPSLIDGN--PPSKVNKEPVLD 530
              +DS  ++   E        + ++ ++      + E   S  D +         E  +D
Sbjct: 245  EDDDSHDDEEERESTIASPVSVHKRAVKRAAPEESIEEDDSYEDSDLEEGGSSYDEGTVD 304

Query: 531  SSKKSPDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIGNLPFDINNEEVKQRFSGF 590
            S   + D  D+       +SE K   L P D  + K TV+I NL FD   E + +    F
Sbjct: 305  SESSAEDQEDE----DVPVSEKKKRKL-PSDVTEGK-TVFIRNLSFDSEEEALGEVLQQF 364

Query: 591  GEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANV-ASGVGIFLKGRQLKVLNAL 650
            G++     VLH  T+  +G  F +F T +AA   +++A++ A G G+ L GRQLKV  A+
Sbjct: 365  GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 424

Query: 651  DKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSASDMMKRQRLEKKRMTKL 710
             +  A + + +K K      RNL LA+EG+I  GT AAEGVSA+DM KR+R E  +  KL
Sbjct: 425  TRDEAAKLQTKKVKKPT-GTRNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKL 484

Query: 711  QSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKPV-IRQIKFLKDVKKGKE 770
            ++ N  VS+TRL +HNLPK++ +K+L+KL +EA       +K V I++ + ++D+K    
Sbjct: 485  KNQNIFVSQTRLCLHNLPKAVDDKQLRKLLLEATRG----EKGVRIKECRVMRDLKGVHG 544

Query: 771  LTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEFAVDNVQMLKLRKAKLQ 830
              K  S G AF EF +H+HAL ALR  NNNPE FG   RPIVEF++++ + LK+++ ++Q
Sbjct: 545  KMKGQSLGYAFAEFQKHEHALRALRHFNNNPEIFGSQKRPIVEFSLEDRRKLKVKELRIQ 604

Query: 831  ASYQDNTANVPKSLHRNADTNAGDIHSNK----TNSRKRKATGNNRPVKEKNCNENKNGD 890
             S Q   +    S  +      G     K        + KA G     K K  + + +G 
Sbjct: 605  RSLQKMESKPVTSKPQKEQKEVGKDKQQKVVQSATQDQSKAPGEQ---KGKAGSTSWSGF 664

Query: 891  HVSNDMAMEESRDRKKRKTRPESGNNTNESPKQKPEGRRSMPEKSSKRSAPMDTVKTKAS 950
                ++   E  D KKR  R      ++  PK +      + +K   +S P    K +  
Sbjct: 665  QTKAEVEQVELPDGKKR--RKVLALPSHRGPKIR------LRDKGKVKSLPSRKPKPQMG 724

Query: 951  QEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQDAVDKLDKLIEQYRSKFSQKSSDSADGE 1001
            Q    + KK+      Q  +++AK+NK      A  + ++L+EQY+ K          G 
Sbjct: 725  QR---KQKKQQLASSVQAPKRKAKENK------AEARFNQLVEQYKQKLL--------GP 750

HSP 2 Score: 72.8 bits (177), Expect = 2.5e-11
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 40  VFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGYGFVQFAVAEDANQAIQQK 99
           +FV  LP S  + QLEE FS VGPV++CF+VT+KGS   RG+G+V F++ ED  +A+  K
Sbjct: 6   LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL--K 65

Query: 100 NGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKSKTNK 140
              + EG KI V  A  +   + + +++N+   S  K  K
Sbjct: 66  EITTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPK 103

[Close]

BLAST of Carg19396 vs. ExPASy Swiss-Prot
Match: Q9NW13 (RNA-binding protein 28 OS=Homo sapiens OX=9606 GN=RBM28 PE=1 SV=3)

HSP 1 Score: 213.8 bits (543), Expect = 9.1e-54
Identity = 261/983 (26.55%), Postives = 414/983 (42.12%), Query Frame = 0


Query: 40   VFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGYGFVQFAVAEDANQAIQQK 99
            +FV  LP S  + QLEE FS VGPV++CF+VT+KGS   RG+G+V F++ ED  +A+  K
Sbjct: 6    LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL--K 65

Query: 100  NGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKSKTNKEGDTSEREEQTTNEDGDTSK 159
               + EG KI V                   T +K K                     +K
Sbjct: 66   EITTFEGCKINV-------------------TVAKKKLR-------------------NK 125

Query: 160  REEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLNSEGRKERHLNAQKLAPLSSYLEDK 219
             +E+  NE+ +  +KE +                                          
Sbjct: 126  TKEKGKNENSECPKKEPK------------------------------------------ 185

Query: 220  EGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGAVCSIVYPLPRKEVEQHGLLRDGCK 279
                                                                        
Sbjct: 186  ------------------------------------------------------------ 245

Query: 280  MDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQLGGEGSKTQKWKLIVRNLPFQAKEK 339
                       K A+ A                          +K +LI+RNL F+  E 
Sbjct: 246  ----------AKKAKVA-------------------------DKKARLIIRNLSFKCSED 305

Query: 340  EIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTCKQDAENAIKKFNGQKFGKRTIAVD 399
            ++K  F+  G V +V +P   D G  +GF FV+F    +A  A+K  N ++   RT+AVD
Sbjct: 306  DLKTVFAQFGAVLEVNIPRKPD-GKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVD 365

Query: 400  WAIPKKIY----SSGANAPVDSDEGEETENDREGSISSDDLEVENAAVHNKSQRSDKDEG 459
            WA+ K  Y    S  A     S E +  E+ ++     +D+E E     +     D+++G
Sbjct: 366  WAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEEEEN--DDDDDDDDEEDG 425

Query: 460  SSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALPSLIDGNPPSKVNK-EPVLDS 519
              +D ++E+ + E       +I ++ ++    + + +      D      ++  E +  S
Sbjct: 426  VFDDEDEEEENIESKVTKPVQIQKRAVKRPAPAKSSDHSEEDSDLEESDSIDDGEELAQS 485

Query: 520  SKKSPDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIGNLPFDINNEEVKQRFSGFG 579
               + +  DK      K    K  +   V+E    +TV+I NL FD   EE+ +    FG
Sbjct: 486  DTSTEEQEDKAVQVSNK---KKRKLPSDVNE---GKTVFIRNLSFDSEEEELGELLQQFG 545

Query: 580  EVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVASGV-GIFLKGRQLKVLNALD 639
            E+     VLH  T+  +G  F +F T +AA   + +A+  +   G+ L GRQLKV  A+ 
Sbjct: 546  ELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLDGRQLKVDLAVT 605

Query: 640  KKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSASDMMKRQRLEKKRMTKLQ 699
            +  A + +  K K      RNL LA+EG+I  GT AAEGVSA+DM KR+R E  +  KL+
Sbjct: 606  RDEAAKLQTTKVKKPT-GTRNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKLK 665

Query: 700  SPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKPV-IRQIKFLKDVKKGKEL 759
              N  VSRTRL +HNLPK++ +K+L+KL + A +     +K V I++ + ++D+K     
Sbjct: 666  DQNIFVSRTRLCLHNLPKAVDDKQLRKLLLSATSG----EKGVRIKECRVMRDLKGVHGN 725

Query: 760  TKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEFAVDNVQMLKLRKAKLQA 819
             K  S G AF EF EH+HAL ALR++NNNPE FGP+ RPIVEF++++ + LK+++ ++Q 
Sbjct: 726  MKGQSLGYAFAEFQEHEHALKALRLINNNPEIFGPLKRPIVEFSLEDRRKLKMKELRIQR 759

Query: 820  SYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGNNRPVKEKNCNENKNGDHVSND 879
            S Q                    + S       +K  G   P K++   + K   H + +
Sbjct: 786  SLQ-------------------KMRSKPATGEPQK--GQPEPAKDQ---QQKAAQHHTEE 759

Query: 880  MAMEESRDRKKRKTRPESGNNTNESPKQ--KPEGRR-----SMPEKSSKRSAPMDTVKTK 939
             +      ++K  +   +G  T    +Q   P+G++     ++P     +    D  K K
Sbjct: 846  QSKVPPEQKRKAGSTSWTGFQTKAEVEQVELPDGKKRRKVLALPSHRGPKIRLRDKGKVK 759

Query: 940  ----ASQEADVQHKKKAKHQV--EQHQRKRAKKNKLPVGQDAVDKLDKLIEQYRSKFSQK 999
                   +  +   K+ K Q+  EQ  RK+AK NK         + ++L+EQY+ K    
Sbjct: 906  PVHPKKPKPQINQWKQEKQQLSSEQVSRKKAKGNKTET------RFNQLVEQYKQKLL-- 759

Query: 1000 SSDSADGEKKGSKQVRR--WFQS 1001
                  G  KG+   +R  WF S
Sbjct: 966  ------GPSKGAPLAKRSKWFDS 759

[Close]

BLAST of Carg19396 vs. ExPASy Swiss-Prot
Match: P37838 (Nucleolar protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NOP4 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-22
Identity = 176/674 (26.11%), Postives = 280/674 (41.54%), Query Frame = 0


Query: 327 LIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTCKQDAENAIKKF 386
           L VR++P    ++++ D FS+   +   +V   ++   S+GF FV F  + D + A+ K 
Sbjct: 28  LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALAKA 87

Query: 387 NGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETEN-DREGSISSDDLEVENAAVHN 446
              KF    + VD A  ++  S   +  V+    E +E    + +   DD + E++ +  
Sbjct: 88  RKTKFNGHILRVDIA-KRRDRSKKTSEVVEKSTPESSEKITGQNNEDEDDADGEDSMLKG 147

Query: 447 KSQRSDKD-EGSSEDSEK-EDISSEIDFEGEAEISRKVLENLIA---------SSAKEAL 506
           K +   ++   S  D  K + I        EA I RK    L           S+ + AL
Sbjct: 148 KPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKISNCRIAL 207

Query: 507 PSL----IDGNPPS---KVNKEPVLDSSKKSPDMSDKVSN--GPEKLSEGKTSILKPVDE 566
            +     IDG   +    V K    D  K  P+M+DK  N  G E   E         +E
Sbjct: 208 ENTKDLKIDGRKVAVDFAVQKNRWEDYKKAQPEMNDKDDNESGNEDAEENHDDEEDENEE 267

Query: 567 EDL-----------------KR---TVYIGNLPFDINNEEVKQRFSGFGEVLSFVPVLHQ 626
           ED                  KR   +V++ N+P+D   E +   FS FG V   +PV+ +
Sbjct: 268 EDRQVDQASKNKESKRKAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDK 327

Query: 627 VTKRPRGTGFLKFKTADAATAAVSSANVASGVGIFL----------KGRQLKVLNAL--- 686
            T   +GT F+ FK        + +A  A    + +          +GR L +   L   
Sbjct: 328 STGLAKGTAFVAFKDQYTYNECIKNAPAAGSTSLLIGDDVMPEYVYEGRVLSITPTLVRE 387

Query: 687 ------DKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSASDMMKRQRLEK 746
                 +K +A  KE         D RNL L  EG ++EG+  A+ ++ +DM  R++  K
Sbjct: 388 DAGRMAEKNAAKRKEALGKAPGEKDRRNLYLLNEGRVVEGSKMADLLTNTDMEIREKSYK 447

Query: 747 KRMTKL-QSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQK----------P 806
            R+ +L ++P+ H+S TRL I NLP++M +K L+ L  +AV   AT+ K           
Sbjct: 448 LRVEQLKKNPSLHLSMTRLAIRNLPRAMNDKALKALARKAVVEFATEVKNKERHPLSKEE 507

Query: 807 VIR----QIKFL----------KDVKKG-----------KELTKNYSCGVAFVEFSEHQH 866
           +IR    + KF+          KD K G           K  T   S G  FVEF +H++
Sbjct: 508 IIRSTKEKYKFMGPDEIEAQKKKDKKSGVVKQAKVIMEVKGSTAGRSRGYGFVEFRDHKN 567

Query: 867 ALVALRVLNNNPET-------------------FGPVNRPIVEFAVDNVQMLKLRKAKLQ 885
           AL+ LR LN +  T                    G   R  VEFA++N  ++K R+ +L+
Sbjct: 568 ALMGLRWLNCHAVTSDEILEGLNDDEKKQVDNDLGKGRRLCVEFAIENSNVVKRRREQLK 627

[Close]

BLAST of Carg19396 vs. ExPASy Swiss-Prot
Match: O74400 (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC4F6.14 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.3e-15
Identity = 162/652 (24.85%), Postives = 262/652 (40.18%), Query Frame = 0


Query: 326 KLIVRNLPFQAKE-KEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTCKQDAENAIK 385
           +LI+RNLP+  K+ + ++  FS  G V ++ +P +   G   GFAFV    ++ AE A+ 
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIP-TKGGGRMCGFAFVWMKDRKAAEEAMN 167

Query: 386 KFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDS-DEGEETENDREGSISSDDLEVENAAV 445
             NG +   R IAVDWA+ K  + +       S +E +E  +D   SI ++D   +    
Sbjct: 168 SLNGTEIDGRPIAVDWAVSKDAFEATTLKDASSEEENKEFVSDEGHSIVTEDASAD---- 227

Query: 446 HNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALPSLIDGNPP 505
                 S+ +E     SE ++++ E + EG                              
Sbjct: 228 ------SESEEEVDGHSEGKELAGESEEEGS----------------------------- 287

Query: 506 SKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSILKPV-DEEDLKRTVYIGNLPFDIN 565
              N + V DS   S D               K SI   + D E L+ TV++ NL F+  
Sbjct: 288 ---NVDDVEDSGDSSSD---------------KNSINHEIRDNEGLEDTVFVRNLLFECT 347

Query: 566 NEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFK-------------------TADA 625
            +E+   F  FG +     V    T R  G GF+KF+                     +A
Sbjct: 348 EQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLEMASQLPTQEPTEA 407

Query: 626 ATAAVSSANVASGVG-------IFLKGRQLKVLNALDKKSA---NEKELEKSK---NDNL 685
               + S  V  G+          L GR LKV +A+ +K A   N+K L++ K      +
Sbjct: 408 EKRFLPSVLVDEGIDTDSVSSRFLLHGRLLKVTSAVTRKEASDINQKSLQERKQKMGKGV 467

Query: 686 DHRNLNLAQEGIILEGTPAAEGVSASD-MMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNL 745
           D R+L L  EG I    P    +S +D  ++ Q + +++    ++P  H+S  RL I N+
Sbjct: 468 DRRHLFLLNEGKIAADHPLFNSLSETDKTLRSQSIAQRKKLLEKNPTLHLSLNRLSIRNI 527

Query: 746 PKSMKEKELQKLCIEAV-----------TSRATKQKPVIRQIKFLKDVKKGKELTK---- 805
            + +  K L  L  +A+            +  T+++  + +   LK  K G  L +    
Sbjct: 528 SRHIDPKILAMLGRQAIRGFMDDVSKGLRANITEEEENLDKGHRLKRGKSGGVLKQAKVE 587

Query: 806 ------NYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEFAVDNVQMLKLRKA 865
                   S G  F++F  H++AL+ALR LN    T   +    +E+A         RK 
Sbjct: 588 TEKAGAGRSKGFGFMQFISHKYALMALRWLNGREITVKKIIDAEIEWA---------RKH 647

Query: 866 KLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRK-----ATGNNRPVKEKNCNEN 916
           K           +P+    N D           N R R+     A  N + VK +   + 
Sbjct: 648 K-----------IPEPQLPNID----------YNDRPRRLIVEFAIENIQVVKRRQ-EKE 669

[Close]

BLAST of Carg19396 vs. ExPASy Swiss-Prot
Match: Q4WJT7 (Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=mrd1 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.5e-08
Identity = 101/402 (25.12%), Postives = 161/402 (40.05%), Query Frame = 0


Query: 38  SKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGYGFVQFAVAEDANQAIQ 97
           ++VFV  LP +FTN QL   FS        F +T       R  GFV F  +E A QA  
Sbjct: 4   TRVFVSGLPPTFTNDQLRMHFSS------RFQITDAHVLPKRRIGFVGFKSSEAAQQAAS 63

Query: 98  QKNGLSIEGRKITVKHA-------MHRAPLEQRRSKENQGTASKS-KTNKEGDTSEREEQ 157
             N   ++  KI+V+ A       + +A   ++ S  N  TA K+ K  ++GD ++++ Q
Sbjct: 64  YFNKTYVKMSKISVEIAKPIDSEPVKKAEKHRKGSTSNDSTAGKALKRKRDGDNTQKDPQ 123

Query: 158 TTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLNSEGRKERHLNAQKL 217
                    +  +  T  +GD      Q  N+      REEQ    SE + E H + Q+ 
Sbjct: 124 LQEYLSVIERPSKTKTWANGDDFLNTIQ--NQPATSELREEQRDDTSE-KVEEHSHKQRK 183

Query: 218 APLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGAVCSIVYPLPRKEVE 277
            P      D    +   R    +V+      D  E+ H +A   G V +I    P +E  
Sbjct: 184 KP----RVDDVPKAAHDREPEPMVL------DKTEEEHERANADGQVEAIP---PTQEEA 243

Query: 278 QHGLLRDGCKMDVSAV--LFASVKSARAAVTILHQKEMQGGVVWARQLGGEGSKTQK--- 337
           +     D  +   S +  L    + A    T   + +         + G + S   K   
Sbjct: 244 EPVSDADWLRSKTSRLLGLLDEDEQAEFDSTAQRKPDPSSEPETVSKAGAQHSDDDKAAV 303

Query: 338 -------------------WKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLS 397
                               +L VRNLP+ A E +++  FS  G + ++ V   + +  S
Sbjct: 304 ESSVEEEEVDTNIEHIRLSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTS 363

Query: 398 KGFAFVKFTCKQDAENAIKKFNGQKFGKRTIAVDWAIPKKIY 408
           KGFA+V++     A  A K+ +G+ F  R + +  A  KK Y
Sbjct: 364 KGFAYVQYIEPDAAVQAYKELDGKHFQGRLMHILPATAKKTY 383

[Close]

BLAST of Carg19396 vs. ExPASy TrEMBL
Match: A0A6J1GMF1 (RNA-binding protein 28 OS=Cucurbita moschata OX=3662 GN=LOC111455599 PE=4 SV=1)

HSP 1 Score: 1818.1 bits (4708), Expect = 0.0e+00
Identity = 970/985 (98.48%), Postives = 974/985 (98.88%), Query Frame = 0


Query: 16   MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGS 75
            MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSF NSQLEETFSDVGPVRRCFMVTQKGS
Sbjct: 1    MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFANSQLEETFSDVGPVRRCFMVTQKGS 60

Query: 76   TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKS 135
            TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKS
Sbjct: 61   TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKS 120

Query: 136  KTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLN 195
            KTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLN
Sbjct: 121  KTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLN 180

Query: 196  SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA 255
            SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA
Sbjct: 181  SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA 240

Query: 256  VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 315
            VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL
Sbjct: 241  VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 300

Query: 316  GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 375
            GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC
Sbjct: 301  GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 360

Query: 376  KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETENDREGSISSDD 435
            KQDAENAIKKFNG+KFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETE DREGSISSDD
Sbjct: 361  KQDAENAIKKFNGKKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETEKDREGSISSDD 420

Query: 436  LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP 495
            LEVENAAVHNKSQRSDKD  SSEDSEKED+SSEIDFEGEAEISRKVLENLIASSAKEALP
Sbjct: 421  LEVENAAVHNKSQRSDKDGSSSEDSEKEDVSSEIDFEGEAEISRKVLENLIASSAKEALP 480

Query: 496  SLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG 555
            SLIDGNPPS VNKEPV DSSKKS DMSDKVSNGPEKLSE KTSILKPVDEEDLKRTVYIG
Sbjct: 481  SLIDGNPPSNVNKEPVFDSSKKSSDMSDKVSNGPEKLSESKTSILKPVDEEDLKRTVYIG 540

Query: 556  NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 615
            NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS
Sbjct: 541  NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 600

Query: 616  GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA 675
            GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA
Sbjct: 601  GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA 660

Query: 676  SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 735
            SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP
Sbjct: 661  SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 720

Query: 736  VIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 795
            VIRQIKFLKDVKKGK LTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF
Sbjct: 721  VIRQIKFLKDVKKGKVLTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 780

Query: 796  AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGNNRPV 855
            AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATG+NRPV
Sbjct: 781  AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGDNRPV 840

Query: 856  KEKNCNENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQKPEGRRSMPEKSSKR 915
            KEKN NENKNGDHVSNDMAMEESRDRKK+KTRPESGNNTNES KQKPEGRRSMPEKSSKR
Sbjct: 841  KEKNRNENKNGDHVSNDMAMEESRDRKKKKTRPESGNNTNESLKQKPEGRRSMPEKSSKR 900

Query: 916  SAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQDAVDKLDKLIEQYRSK 975
            SAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQDAVDKLDKLIEQYRSK
Sbjct: 901  SAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQDAVDKLDKLIEQYRSK 960

Query: 976  FSQKSSDSADGEKKGSKQVRRWFQS 1001
            FSQKSSDSADGEKKGSKQVRRWFQS
Sbjct: 961  FSQKSSDSADGEKKGSKQVRRWFQS 985

[Close]

BLAST of Carg19396 vs. ExPASy TrEMBL
Match: A0A6J1IDH9 (RNA-binding protein 28 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111474290 PE=4 SV=1)

HSP 1 Score: 1807.7 bits (4681), Expect = 0.0e+00
Identity = 967/985 (98.17%), Postives = 972/985 (98.68%), Query Frame = 0


Query: 16   MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGS 75
            MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQ+GS
Sbjct: 1    MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQRGS 60

Query: 76   TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKS 135
            TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQG ASKS
Sbjct: 61   TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGIASKS 120

Query: 136  KTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLN 195
            KTNKEGDTSEREEQTTNEDGDTSKREEQ TNEDGDTSEKEEQTTNEDGD+SKREEQTTLN
Sbjct: 121  KTNKEGDTSEREEQTTNEDGDTSKREEQTTNEDGDTSEKEEQTTNEDGDISKREEQTTLN 180

Query: 196  SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA 255
            SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQA+EVGA
Sbjct: 181  SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAKEVGA 240

Query: 256  VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 315
            VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL
Sbjct: 241  VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 300

Query: 316  GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 375
            GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC
Sbjct: 301  GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 360

Query: 376  KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETENDREGSISSDD 435
            KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETE DREGSISSDD
Sbjct: 361  KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETEKDREGSISSDD 420

Query: 436  LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP 495
            LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP
Sbjct: 421  LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP 480

Query: 496  SLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG 555
            SLIDGNPPSKVNKEPVLDSSKKS DMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG
Sbjct: 481  SLIDGNPPSKVNKEPVLDSSKKSSDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG 540

Query: 556  NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 615
            NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS
Sbjct: 541  NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 600

Query: 616  GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA 675
            GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA
Sbjct: 601  GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA 660

Query: 676  SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 735
            SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP
Sbjct: 661  SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 720

Query: 736  VIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 795
            VIRQIKFLKDVKKGK LTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF
Sbjct: 721  VIRQIKFLKDVKKGKVLTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 780

Query: 796  AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGNNRPV 855
            AVDNVQMLKLRKAKLQASYQDNTANVPK+LHRNADTNAGDIHSNKTNSRKRKATG+NRPV
Sbjct: 781  AVDNVQMLKLRKAKLQASYQDNTANVPKALHRNADTNAGDIHSNKTNSRKRKATGDNRPV 840

Query: 856  KEKNCNENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQKPEGRRSMPEKSSKR 915
            KEKN NENKNGDHVSNDMAMEESR RKKRKTRPESG N NES KQKPEGRRSMPEK SKR
Sbjct: 841  KEKNRNENKNGDHVSNDMAMEESRARKKRKTRPESG-NINESQKQKPEGRRSMPEKLSKR 900

Query: 916  SAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQDAVDKLDKLIEQYRSK 975
            SAPMDTVKTKASQEADVQHKKKAKHQVEQ QRKRAKKNKLPVGQDAVDKLDKLIEQYRSK
Sbjct: 901  SAPMDTVKTKASQEADVQHKKKAKHQVEQQQRKRAKKNKLPVGQDAVDKLDKLIEQYRSK 960

Query: 976  FSQKSSDSADGEKKGSKQVRRWFQS 1001
            FSQKSSD ADGEKKGSKQVRRWFQS
Sbjct: 961  FSQKSSDPADGEKKGSKQVRRWFQS 984

[Close]

BLAST of Carg19396 vs. ExPASy TrEMBL
Match: A0A6J1IG31 (RNA-binding protein 28 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111474290 PE=4 SV=1)

HSP 1 Score: 1803.1 bits (4669), Expect = 0.0e+00
Identity = 967/986 (98.07%), Postives = 972/986 (98.58%), Query Frame = 0


Query: 16   MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGS 75
            MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQ+GS
Sbjct: 1    MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQRGS 60

Query: 76   TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKS 135
            TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQG ASKS
Sbjct: 61   TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGIASKS 120

Query: 136  KTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLN 195
            KTNKEGDTSEREEQTTNEDGDTSKREEQ TNEDGDTSEKEEQTTNEDGD+SKREEQTTLN
Sbjct: 121  KTNKEGDTSEREEQTTNEDGDTSKREEQTTNEDGDTSEKEEQTTNEDGDISKREEQTTLN 180

Query: 196  SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA 255
            SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQA+EVGA
Sbjct: 181  SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAKEVGA 240

Query: 256  VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 315
            VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL
Sbjct: 241  VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 300

Query: 316  GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 375
            GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC
Sbjct: 301  GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 360

Query: 376  KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETENDREGSISSDD 435
            KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETE DREGSISSDD
Sbjct: 361  KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETEKDREGSISSDD 420

Query: 436  LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP 495
            LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP
Sbjct: 421  LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP 480

Query: 496  SLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG 555
            SLIDGNPPSKVNKEPVLDSSKKS DMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG
Sbjct: 481  SLIDGNPPSKVNKEPVLDSSKKSSDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG 540

Query: 556  NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 615
            NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS
Sbjct: 541  NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 600

Query: 616  GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA 675
            GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA
Sbjct: 601  GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA 660

Query: 676  SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 735
            SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP
Sbjct: 661  SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 720

Query: 736  VIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 795
            VIRQIKFLKDVKKGK LTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF
Sbjct: 721  VIRQIKFLKDVKKGKVLTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 780

Query: 796  AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGNNRPV 855
            AVDNVQMLKLRKAKLQASYQDNTANVPK+LHRNADTNAGDIHSNKTNSRKRKATG+NRPV
Sbjct: 781  AVDNVQMLKLRKAKLQASYQDNTANVPKALHRNADTNAGDIHSNKTNSRKRKATGDNRPV 840

Query: 856  KEKNCNENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQKPEGRRSMPEKSSKR 915
            KEKN NENKNGDHVSNDMAMEESR RKKRKTRPESG N NES KQKPEGRRSMPEK SKR
Sbjct: 841  KEKNRNENKNGDHVSNDMAMEESRARKKRKTRPESG-NINESQKQKPEGRRSMPEKLSKR 900

Query: 916  SAPMDTVKTKASQEADVQHKKKAKHQVE-QHQRKRAKKNKLPVGQDAVDKLDKLIEQYRS 975
            SAPMDTVKTKASQEADVQHKKKAKHQVE Q QRKRAKKNKLPVGQDAVDKLDKLIEQYRS
Sbjct: 901  SAPMDTVKTKASQEADVQHKKKAKHQVEQQQQRKRAKKNKLPVGQDAVDKLDKLIEQYRS 960

Query: 976  KFSQKSSDSADGEKKGSKQVRRWFQS 1001
            KFSQKSSD ADGEKKGSKQVRRWFQS
Sbjct: 961  KFSQKSSDPADGEKKGSKQVRRWFQS 985

[Close]

BLAST of Carg19396 vs. ExPASy TrEMBL
Match: A0A6J1IIK5 (RNA-binding protein 28 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111474290 PE=4 SV=1)

HSP 1 Score: 1713.7 bits (4437), Expect = 0.0e+00
Identity = 916/937 (97.76%), Postives = 923/937 (98.51%), Query Frame = 0


Query: 16  MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGS 75
           MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQ+GS
Sbjct: 1   MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQRGS 60

Query: 76  TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKS 135
           TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQG ASKS
Sbjct: 61  TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGIASKS 120

Query: 136 KTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLN 195
           KTNKEGDTSEREEQTTNEDGDTSKREEQ TNEDGDTSEKEEQTTNEDGD+SKREEQTTLN
Sbjct: 121 KTNKEGDTSEREEQTTNEDGDTSKREEQTTNEDGDTSEKEEQTTNEDGDISKREEQTTLN 180

Query: 196 SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA 255
           SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQA+EVGA
Sbjct: 181 SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAKEVGA 240

Query: 256 VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 315
           VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL
Sbjct: 241 VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 300

Query: 316 GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 375
           GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC
Sbjct: 301 GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 360

Query: 376 KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETENDREGSISSDD 435
           KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETE DREGSISSDD
Sbjct: 361 KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETEKDREGSISSDD 420

Query: 436 LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP 495
           LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP
Sbjct: 421 LEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALP 480

Query: 496 SLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG 555
           SLIDGNPPSKVNKEPVLDSSKKS DMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG
Sbjct: 481 SLIDGNPPSKVNKEPVLDSSKKSSDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIG 540

Query: 556 NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 615
           NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS
Sbjct: 541 NLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVAS 600

Query: 616 GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA 675
           GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA
Sbjct: 601 GVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSA 660

Query: 676 SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 735
           SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP
Sbjct: 661 SDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKP 720

Query: 736 VIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 795
           VIRQIKFLKDVKKGK LTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF
Sbjct: 721 VIRQIKFLKDVKKGKVLTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEF 780

Query: 796 AVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGNNRPV 855
           AVDNVQMLKLRKAKLQASYQDNTANVPK+LHRNADTNAGDIHSNKTNSRKRKATG+NRPV
Sbjct: 781 AVDNVQMLKLRKAKLQASYQDNTANVPKALHRNADTNAGDIHSNKTNSRKRKATGDNRPV 840

Query: 856 KEKNCNENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQKPEGRRSMPEKSSKR 915
           KEKN NENKNGDHVSNDMAMEESR RKKRKTRPESG N NES KQKPEGRRSMPEK SKR
Sbjct: 841 KEKNRNENKNGDHVSNDMAMEESRARKKRKTRPESG-NINESQKQKPEGRRSMPEKLSKR 900

Query: 916 SAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKK 953
           SAPMDTVKTKASQEADVQHKKKAKHQVEQH R R ++
Sbjct: 901 SAPMDTVKTKASQEADVQHKKKAKHQVEQHSRGRGQR 936

[Close]

BLAST of Carg19396 vs. ExPASy TrEMBL
Match: A0A1S3BIA6 (RNA-binding protein 28 OS=Cucumis melo OX=3656 GN=LOC103490362 PE=4 SV=1)

HSP 1 Score: 1441.8 bits (3731), Expect = 0.0e+00
Identity = 795/990 (80.30%), Postives = 864/990 (87.27%), Query Frame = 0


Query: 16   MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGS 75
            MGKN+R KDG +KGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGS
Sbjct: 1    MGKNRRLKDGADKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGS 60

Query: 76   TEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKS 135
            TEHRG+GFVQFAVAEDAN+AIQ KNGLS EGRKITVKHAMHRAPLEQRRSKENQ  AS  
Sbjct: 61   TEHRGFGFVQFAVAEDANRAIQLKNGLSFEGRKITVKHAMHRAPLEQRRSKENQVAASTL 120

Query: 136  KTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLN 195
            + N EGDTSE EEQ TN+D  TSKR+EQ  +++ DT              SKR EQT  N
Sbjct: 121  EANVEGDTSEMEEQPTNKDRGTSKRDEQPIDKERDT--------------SKRAEQTISN 180

Query: 196  SEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGA 255
            SEG KERHL+A+KLA LSSYLEDK+G SGKQRIARTVV+GGLL+ DMAEDVHRQ ++ G 
Sbjct: 181  SEG-KERHLSARKLASLSSYLEDKKGHSGKQRIARTVVIGGLLDGDMAEDVHRQVKDAGG 240

Query: 256  VCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQL 315
            VCSIVYPLPRKEVEQHG+LRDGCKMDVSAVLF SVKSARAAVTILHQKEM+GGVVWARQL
Sbjct: 241  VCSIVYPLPRKEVEQHGILRDGCKMDVSAVLFDSVKSARAAVTILHQKEMKGGVVWARQL 300

Query: 316  GGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTC 375
            GGEGSKTQKWK+IVRNLPF+AKEKEIK+TFSSAGFVWDVM+P +SDTGLSKGFAF+KFTC
Sbjct: 301  GGEGSKTQKWKVIVRNLPFKAKEKEIKNTFSSAGFVWDVMMPQNSDTGLSKGFAFIKFTC 360

Query: 376  KQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSS--GANAPVDSDEGEETENDREGSISS 435
            KQDAE+AI+KFNG+KFG+RTIAVDWA+PKKIYSS  GANAPVDSD+ ++TE DRE SIS 
Sbjct: 361  KQDAESAIQKFNGKKFGQRTIAVDWAVPKKIYSSGGGANAPVDSDDEDQTERDRESSISG 420

Query: 436  DDLEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEA 495
             D E EN A H++S      E S EDSEKEDISSE+DFEGEAEI+RKVLE LI+SSAKEA
Sbjct: 421  GDFEDENTAGHHES------ESSLEDSEKEDISSEVDFEGEAEIARKVLETLISSSAKEA 480

Query: 496  LPSLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVY 555
            LPSLIDGNP SKVNK+P  DSSKKS DMSDKVSN   KLSE KTSILK  DE+DLKRTVY
Sbjct: 481  LPSLIDGNPASKVNKDPDFDSSKKSSDMSDKVSNEHGKLSESKTSILKQTDEDDLKRTVY 540

Query: 556  IGNLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANV 615
            IGNLPFDI+NEEVKQRFSGFGEVLSFVPVLHQVTKRP+GTGFLKFKT DAA AAVSSAN 
Sbjct: 541  IGNLPFDIDNEEVKQRFSGFGEVLSFVPVLHQVTKRPKGTGFLKFKTTDAANAAVSSANA 600

Query: 616  ASGVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGV 675
            ASGVGIFLKGRQLKVLNALDKKSA++KELEKSKNDN DHRNL LAQEG+ILEGTPAAEGV
Sbjct: 601  ASGVGIFLKGRQLKVLNALDKKSAHDKELEKSKNDNHDHRNLYLAQEGLILEGTPAAEGV 660

Query: 676  SASDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQ 735
            SASDM KRQRLEKKR TKLQSPNFHVSRTRLVIHNLPKSMKEKEL KLCIEAVTSRATKQ
Sbjct: 661  SASDMEKRQRLEKKRTTKLQSPNFHVSRTRLVIHNLPKSMKEKELHKLCIEAVTSRATKQ 720

Query: 736  KPVIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIV 795
            KPVIRQIKFLKDVKKGK LTKN+SCGVAFVEFSEH+HALVALRVLNNNPETFGP+NRPIV
Sbjct: 721  KPVIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHALVALRVLNNNPETFGPINRPIV 780

Query: 796  EFAVDNVQMLKLRKAKLQASYQDN-TANVPKSLHRN--ADTNAGDIHSNKTNSRKRKATG 855
            EFA+DNVQ LKLRKAKLQA  QDN TANVPK+  RN  +DT A D+HSNK NSRKRKA  
Sbjct: 781  EFAIDNVQTLKLRKAKLQAWSQDNSTANVPKARLRNDGSDTKARDVHSNKNNSRKRKAID 840

Query: 856  NNRPVKEKNCNENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQKPEGRRSMPE 915
            +N  VK +N  E++N +HVSND+ M+ESR RKKRKTRP+ G NTNES KQKPEGRR +P+
Sbjct: 841  DNHLVKAQNHIEDENDNHVSNDV-MQESRARKKRKTRPDIG-NTNESQKQKPEGRRLIPQ 900

Query: 916  KSSKRSAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQDAVDKLDKLIE 975
            KSSKR A MD+ K + SQEAD Q KKK KHQ+EQ QRKR  KNK P+G+D VDKLD LIE
Sbjct: 901  KSSKRPASMDSEKIEVSQEADAQQKKKVKHQIEQQQRKRPMKNKEPIGRDIVDKLDVLIE 960

Query: 976  QYRSKFSQKSSDSADGEKKGSKQVRRWFQS 1001
            QY+SKF Q+ SD  D EKKGSKQVRRWFQS
Sbjct: 961  QYQSKFLQQRSDRTDSEKKGSKQVRRWFQS 967

[Close]

BLAST of Carg19396 vs. TAIR 10
Match: AT2G21440.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 790.4 bits (2040), Expect = 1.7e-228
Identity = 503/1033 (48.69%), Postives = 674/1033 (65.25%), Query Frame = 0


Query: 16   MGKNKR-FKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKG 75
            MGKNKR  KDG EK      H  + V V  LPYS TN+QLEE FS+VGPVRRCF+VT KG
Sbjct: 1    MGKNKRERKDGEEK----SPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKG 60

Query: 76   STEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTA-- 135
            S EHRG+ FV+FA+ ED N+AI+ KNG ++ GR+ITVK A HR  L++RR+K  +G +  
Sbjct: 61   SDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHRPSLQERRTKAAEGISVP 120

Query: 136  --SKSKTNKEGDTSEREEQTTNEDGDTSKREEQATNE--------DGDTSEKEEQTTNED 195
              S+ +++K+    E +E+ +  +    K  E+   E        +     K+ +   E 
Sbjct: 121  DNSQGQSDKDTSIPETDEKVSPPEKKLEKPVERKKVEKPIERKQVEKPVERKKAEKPIEL 180

Query: 196  GDVSKREEQTTLNSEGRK------------ERHLNAQKLAPLSSYLEDKEGSSGKQRIAR 255
              V K  E+  +     +            E+ +  ++   L   L DKE  S KQR+AR
Sbjct: 181  KQVEKPFERKQVEKPVERKQVEKPVERKQVEKPIERKRPTKLHVDLPDKETCSDKQRVAR 240

Query: 256  TVVVGGLLNADMAEDVHRQAREVGAVCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASV 315
            TV+ GGL NA+MAE VH + +E+G VCS+ YPLP++E++Q+GL +DGC+ + SAVLF SV
Sbjct: 241  TVIFGGLANAEMAEVVHSRVKEIGTVCSVRYPLPKEELQQNGLTQDGCRAEASAVLFTSV 300

Query: 316  KSARAAVTILHQKEMQGGVVWARQLGGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGF 375
            KSA AAV  LHQ E++G ++WARQLGGEGSK QKWKLI+RNLPFQAK  +IK  FS+ GF
Sbjct: 301  KSACAAVAKLHQTEVKGNLIWARQLGGEGSKAQKWKLIIRNLPFQAKPSDIKVVFSAVGF 360

Query: 376  VWDVMVPHSSDTGLSKGFAFVKFTCKQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSG 435
            VWDV +P + +TGL KGFAFVKFTCK+DA NAIKKFNG  FGKR IAVDWA+PK IY+  
Sbjct: 361  VWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPKNIYNGA 420

Query: 436  ANAPVDSDEGEETENDREGSISSDDLEVENAAVHNK----SQRSDKDEGSSE----DSEK 495
            A+A   S +G++  +D +   SS DLE  + AV +         D ++GS++    D+  
Sbjct: 421  ADATTASADGDKEGSDGDSENSSVDLEEVDEAVESHPPPGDDTDDDEDGSNKLTESDALD 480

Query: 496  EDISSEIDFEGEAEISRKVLENLIASS-AKEALPSLIDGNPPSKVNKEPVLDSSKKSPDM 555
            +D+ ++++FE EA+++RKVL+NL+ASS    A P         + +K  +  SS K    
Sbjct: 481  KDVGTDMNFEDEADVARKVLKNLLASSKGSTATPE----GETEESDKSKLKSSSTKPVAD 540

Query: 556  SDKVSNGPEKLSEGKTSILKP---VDEEDLKRTVYIGNLPFDINNEEVKQRFSGFGEVLS 615
            S  VS   E L  GKT ++ P    D +D +RT++I NLPFD+  EEVKQRF+ FGEV S
Sbjct: 541  SSGVS---EPLKSGKTKVVAPKETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVES 600

Query: 616  FVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVASGVGIFLKGRQLKVLNALDKKSAN 675
               VLH+VTKRP GT F+KFKTADA+ AA+S+A+ ASGVG+ LKGRQL V+ A+ KK+A 
Sbjct: 601  LSLVLHKVTKRPEGTAFVKFKTADASVAAISAADTASGVGVLLKGRQLNVMRAVGKKAAK 660

Query: 676  EKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSASDMMKRQRLEKKRMTKLQSPNFH 735
            + EL+K++  N+DHRNL LA+EG IL+ TPAAEGVSA DM KR+RL + +M  LQSPNFH
Sbjct: 661  DIELKKTEEKNVDHRNLYLAKEGQILDDTPAAEGVSAEDMDKRRRLHENKMKMLQSPNFH 720

Query: 736  VSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKELTKNYSC 795
            VSRTRLVI+NLPKSM  K+L +L ++AVTSRATKQKP IRQIKFL++ KKGK  TKNYS 
Sbjct: 721  VSRTRLVIYNLPKSMNPKQLNRLLVDAVTSRATKQKPCIRQIKFLQNEKKGKVDTKNYSR 780

Query: 796  GVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEFAVDNVQMLKLRKAKLQASYQDNT 855
            GVAFVEF+EH+HALVALRVLNNNPETFGP +RP++EFAVDNVQ LK+R+AK Q   Q   
Sbjct: 781  GVAFVEFTEHEHALVALRVLNNNPETFGPQHRPVIEFAVDNVQKLKIREAKQQQFQQREK 840

Query: 856  ANVPKSLHRNADTNAGDIHSNKTNSRKRKA-TGNNRPVKEKNCNENKNG------DHVSN 915
             N       N +  A D      N  KRK   G+N   +++N    K G      +   +
Sbjct: 841  HNESDQQQANGEAQAPD------NKYKRKTREGDNTGPRKENAARFKKGPREESKEEAKS 900

Query: 916  DMAMEESRDRKKRKTRPESGNNTNESPKQKPEGRRSMPEKSSKRSAPMDTVKTKASQEAD 975
            ++A++++   KKR  R      T E P    +G+    ++++++  P      K S++  
Sbjct: 901  NIAVKDNAAEKKRPIR------TQEKPSSNKKGQLMRQKETTEKPDP------KISKDLS 960

Query: 976  VQHKKK-AKHQVEQH---QRKRAKKNKLPVGQDAVDKLDKLIEQYRSKFSQKSSDSADGE 1001
               K+K  + + E++   QRKR K+ +   G + VDKLD LIE+YRSKFSQ S+ +   +
Sbjct: 961  EPRKRKFGEDRGEENRNGQRKRKKQGQGQGGAEVVDKLDLLIEKYRSKFSQSSAKTGP-Q 1003

[Close]

BLAST of Carg19396 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-09
Identity = 28/75 (37.33%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 327 LIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTCKQDAENAIKKF 386
           L++RNLP  A+  +++D+F   G + D+ +P +  TG  +GF FVK+   +DA  A+K+ 
Sbjct: 49  LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108

Query: 387 NGQKFGKRTIAVDWA 402
           N +  G R IA+ +A
Sbjct: 109 NHKVIGGREIAIVFA 123

[Close]

BLAST of Carg19396 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-09
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 326 KLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTCKQDAENAIKK 385
           K++VRNLPF   E  +K  FS+ G + +V +        SKG+AF++FT + DA  AI+ 
Sbjct: 41  KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100

Query: 386 FNGQKFGKRTIAVDWAIPKKIYSSG----ANAPVDSDEGEETEND 427
            + + +  R I +D A P K    G    +  P  SDE EE  ND
Sbjct: 101 MDRRMYNGRMIYIDIAKPGKRDFQGLPRTSGPPEKSDEPEEAAND 145

[Close]

BLAST of Carg19396 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-09
Identity = 31/90 (34.44%), Postives = 46/90 (51.11%), Query Frame = 0


Query: 326 KLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTCKQDAENAIKK 385
           KL +  L F   E+ + + FS  G V +  +     +  SKGF FV F    +A+ A+ +
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 386 FNGQKFGKRTIAVDWAIPKKIYSSGANAPV 416
           FNGQ+   RTI VD+A  K+    G   P+
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQSLGGGGGYPI 124

[Close]

BLAST of Carg19396 vs. TAIR 10
Match: AT2G36660.1 (poly(A) binding protein 7 )

HSP 1 Score: 60.8 bits (146), Expect = 7.0e-09
Identity = 90/371 (24.26%), Postives = 140/371 (37.74%), Query Frame = 0


Query: 40  VFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGYGFVQFAVAEDANQAIQQK 99
           VFVKNLP S TN+ L++ F   G +  C + T +   + RGYGFVQF   + A+ AIQ  
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDG-KSRGYGFVQFEQEDAAHAAIQTL 173

Query: 100 NGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKSKTNKEGDTSEREEQTTNEDGDTSK 159
           N   +  ++I V   M +                                      D  K
Sbjct: 174 NSTIVADKEIYVGKFMKKT-------------------------------------DRVK 233

Query: 160 REEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLNSEGRKERHLNAQKLAPLSSYLEDK 219
            EE+ TN             N D DVS+         +  +E+     K+  L+      
Sbjct: 234 PEEKYTN---------LYMKNLDADVSE---------DLLREKFAEFGKIVSLAI----- 293

Query: 220 EGSSGKQRIARTVVVGGLLNADMAEDVHRQAREV-----GAVCSIVYPLPRKEVEQHGLL 279
             +  + R+ R       +N D  ED  R A  V     G+ C  V    +K+ E+  LL
Sbjct: 294 --AKDENRLCRGY---AFVNFDNPEDARRAAETVNGTKFGSKCLYV-GRAQKKAEREQLL 353

Query: 280 RDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQLGGEGSKTQKWKLIVRNLPF 339
           R+  K                     H+++     V                + V+N+  
Sbjct: 354 REQFKEK-------------------HEEQKMIAKV--------------SNIYVKNVNV 383

Query: 340 QAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTCKQDAENAIKKFNGQKFGKR 399
              E+E++  FS  G +    +    + G SKGF FV F+  ++A +A+K F+GQ F  +
Sbjct: 414 AVTEEELRKHFSQCGTITSTKL-MCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGK 383

Query: 400 TIAVDWAIPKK 406
            + V  A  K+
Sbjct: 474 PLYVAIAQKKE 383

The following BLAST results are available for this feature:

BLAST of Carg19396 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011721.1	0.0e+00	100.00	RNA-binding protein 28, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6572055.1	0.0e+00	99.49	Chromatin remodeling protein SHL, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022953093.1	0.0e+00	98.48	RNA-binding protein 28 [Cucurbita moschata]	[more]
XP_023511705.1	0.0e+00	98.17	RNA-binding protein 28 [Cucurbita pepo subsp. pepo]	[more]
XP_022975201.1	0.0e+00	98.17	RNA-binding protein 28 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg19396 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8CGC6	1.8e-54	30.06	RNA-binding protein 28 OS=Mus musculus OX=10090 GN=Rbm28 PE=1 SV=4	[more]
Q9NW13	9.1e-54	26.55	RNA-binding protein 28 OS=Homo sapiens OX=9606 GN=RBM28 PE=1 SV=3	[more]
P37838	1.8e-22	26.11	Nucleolar protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=...	[more]
O74400	8.3e-15	24.85	Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe (strain...	[more]
Q4WJT7	7.5e-08	25.12	Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain...	[more]

BLAST of Carg19396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GMF1	0.0e+00	98.48	RNA-binding protein 28 OS=Cucurbita moschata OX=3662 GN=LOC111455599 PE=4 SV=1	[more]
A0A6J1IDH9	0.0e+00	98.17	RNA-binding protein 28 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111474290 PE...	[more]
A0A6J1IG31	0.0e+00	98.07	RNA-binding protein 28 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111474290 PE...	[more]
A0A6J1IIK5	0.0e+00	97.76	RNA-binding protein 28 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111474290 PE...	[more]
A0A1S3BIA6	0.0e+00	80.30	RNA-binding protein 28 OS=Cucumis melo OX=3656 GN=LOC103490362 PE=4 SV=1	[more]

BLAST of Carg19396 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21440.1	1.7e-228	48.69	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G18810.1	2.4e-09	37.33	SC35-like splicing factor 28	[more]
AT4G20030.1	5.3e-09	37.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	5.3e-09	34.44	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G36660.1	7.0e-09	24.26	poly(A) binding protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 935..955
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 899..918
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 495..537
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 850..890
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 510..530
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 980..994
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 409..470
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 426..456
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 816..838
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 975..1000
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 816..962
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 545..811
None	No IPR available	PANTHER	PTHR24012:SF697	RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED	coord: 545..811
None	No IPR available	PANTHER	PTHR24012:SF697	RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED	coord: 20..441
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 20..441
None	No IPR available	CDD	cd12416	RRM4_RBM28_like	coord: 702..799 e-value: 8.94524E-43 score: 148.905
None	No IPR available	CDD	cd12414	RRM2_RBM28_like	coord: 326..402 e-value: 4.77608E-30 score: 111.578
None	No IPR available	CDD	cd12413	RRM1_RBM28_like	coord: 40..117 e-value: 1.38431E-32 score: 118.873
None	No IPR available	CDD	cd12415	RRM3_RBM28_like	coord: 550..631 e-value: 4.47245E-24 score: 94.9702
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 551..629 e-value: 8.0E-19 score: 78.5 coord: 39..112 e-value: 7.7E-24 score: 95.2 coord: 326..399 e-value: 4.6E-23 score: 92.6 coord: 703..795 e-value: 1.9E-5 score: 34.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 327..396 e-value: 5.5E-17 score: 61.4 coord: 552..612 e-value: 3.7E-14 score: 52.3 coord: 40..109 e-value: 2.8E-19 score: 68.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 702..815 score: 9.950859
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 325..403 score: 17.011795
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 38..116 score: 17.796343
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 550..633 score: 15.852027
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 31..155 e-value: 1.5E-25 score: 91.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 541..642 e-value: 2.3E-20 score: 74.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 314..460 e-value: 2.2E-26 score: 94.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 701..796 e-value: 3.4E-14 score: 54.7
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 550..780
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 38..311
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 321..412

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19396-RA	Carg19396-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding