Carg18871 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGCCAGAGGGCACACAGAGAGAGGAGGTCAGTTAAAATCACCGTGTCGGTCGGATACGTATATAGACACTGAGAATCAACAGCAGTTTCCGGCCGCCCAGACGGCGGCGGGGAATAGACACAGCCATTTACACGGTGGTTCGACGTTTTCCAAAGGCGGCTCCGATGAATCGGAGGTGAAAAGGCAAAAAAGGATAGCGAAGTACAAGGCTTACGCTGTAGAAAGCAAATTCAAGGCGTCGATTAGGAGTGGGATTCGGTGGGTAAAAATCAAGTGTGGTGACCTTCTTCGTCGTTGA ATGGCAGCCAGAGGGCACACAGAGAGAGGAGGTCAGTTAAAATCACCGTGTCGGTCGGATACGTATATAGACACTGAGAATCAACAGCAGTTTCCGGCCGCCCAGACGGCGGCGGGGAATAGACACAGCCATTTACACGGTGGTTCGACGTTTTCCAAAGGCGGCTCCGATGAATCGGAGGTGAAAAGGCAAAAAAGGATAGCGAAGTACAAGGCTTACGCTGTAGAAAGCAAATTCAAGGCGTCGATTAGGAGTGGGATTCGGTGGGTAAAAATCAAGTGTGGTGACCTTCTTCGTCGTTGA ATGGCAGCCAGAGGGCACACAGAGAGAGGAGGTCAGTTAAAATCACCGTGTCGGTCGGATACGTATATAGACACTGAGAATCAACAGCAGTTTCCGGCCGCCCAGACGGCGGCGGGGAATAGACACAGCCATTTACACGGTGGTTCGACGTTTTCCAAAGGCGGCTCCGATGAATCGGAGGTGAAAAGGCAAAAAAGGATAGCGAAGTACAAGGCTTACGCTGTAGAAAGCAAATTCAAGGCGTCGATTAGGAGTGGGATTCGGTGGGTAAAAATCAAGTGTGGTGACCTTCTTCGTCGTTGA MAARGHTERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR Homology
BLAST of Carg18871 vs. NCBI nr
Match: KAG7026338.1 (hypothetical protein SDJN02_12839, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 201.1 bits (510), Expect = 4.6e-48 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
BLAST of Carg18871 vs. NCBI nr
Match: KAG6593998.1 (hypothetical protein SDJN03_13474, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 174.9 bits (442), Expect = 3.6e-40 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of Carg18871 vs. NCBI nr
Match: KGN47400.1 (hypothetical protein Csa_023055 [Cucumis sativus]) HSP 1 Score: 124.8 bits (312), Expect = 4.2e-25 Identity = 66/100 (66.00%), Postives = 74/100 (74.00%), Query Frame = 0
BLAST of Carg18871 vs. NCBI nr
Match: KAG6575094.1 (hypothetical protein SDJN03_25733, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013667.1 hypothetical protein SDJN02_23834, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 107.8 bits (268), Expect = 5.3e-20 Identity = 59/100 (59.00%), Postives = 69/100 (69.00%), Query Frame = 0
BLAST of Carg18871 vs. NCBI nr
Match: XP_022138799.1 (uncharacterized protein LOC111009876 [Momordica charantia]) HSP 1 Score: 107.1 bits (266), Expect = 9.1e-20 Identity = 62/107 (57.94%), Postives = 72/107 (67.29%), Query Frame = 0
BLAST of Carg18871 vs. ExPASy TrEMBL
Match: A0A0A0KCE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G312030 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 2.0e-25 Identity = 66/100 (66.00%), Postives = 74/100 (74.00%), Query Frame = 0
BLAST of Carg18871 vs. ExPASy TrEMBL
Match: A0A6J1CB45 (uncharacterized protein LOC111009876 OS=Momordica charantia OX=3673 GN=LOC111009876 PE=4 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 4.4e-20 Identity = 62/107 (57.94%), Postives = 72/107 (67.29%), Query Frame = 0
BLAST of Carg18871 vs. ExPASy TrEMBL
Match: A0A5D3BVC0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00180 PE=4 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 6.0e-17 Identity = 56/101 (55.45%), Postives = 68/101 (67.33%), Query Frame = 0
BLAST of Carg18871 vs. ExPASy TrEMBL
Match: I1GQX4 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_1g16830v3 PE=4 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 9.5e-07 Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0
BLAST of Carg18871 vs. ExPASy TrEMBL
Match: A0A6A6LTE9 (C2H2-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_037828 PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06 Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 0
BLAST of Carg18871 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 58.9 bits (141), Expect = 2.7e-09 Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 0
BLAST of Carg18871 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 52.4 bits (124), Expect = 2.5e-07 Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 0
BLAST of Carg18871 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 47.4 bits (111), Expect = 8.0e-06 Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 0
BLAST of Carg18871 vs. TAIR 10
Match: AT3G62640.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04 Identity = 17/34 (50.00%), Postives = 26/34 (76.47%), Query Frame = 0
BLAST of Carg18871 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 41.6 bits (96), Expect = 4.4e-04 Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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