Carg18871 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18871
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein of unknown function (DUF3511)
LocationCarg_Chr08: 7636443 .. 7636745 (+)
RNA-Seq ExpressionCarg18871
SyntenyCarg18871
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCAGAGGGCACACAGAGAGAGGAGGTCAGTTAAAATCACCGTGTCGGTCGGATACGTATATAGACACTGAGAATCAACAGCAGTTTCCGGCCGCCCAGACGGCGGCGGGGAATAGACACAGCCATTTACACGGTGGTTCGACGTTTTCCAAAGGCGGCTCCGATGAATCGGAGGTGAAAAGGCAAAAAAGGATAGCGAAGTACAAGGCTTACGCTGTAGAAAGCAAATTCAAGGCGTCGATTAGGAGTGGGATTCGGTGGGTAAAAATCAAGTGTGGTGACCTTCTTCGTCGTTGA

mRNA sequence

ATGGCAGCCAGAGGGCACACAGAGAGAGGAGGTCAGTTAAAATCACCGTGTCGGTCGGATACGTATATAGACACTGAGAATCAACAGCAGTTTCCGGCCGCCCAGACGGCGGCGGGGAATAGACACAGCCATTTACACGGTGGTTCGACGTTTTCCAAAGGCGGCTCCGATGAATCGGAGGTGAAAAGGCAAAAAAGGATAGCGAAGTACAAGGCTTACGCTGTAGAAAGCAAATTCAAGGCGTCGATTAGGAGTGGGATTCGGTGGGTAAAAATCAAGTGTGGTGACCTTCTTCGTCGTTGA

Coding sequence (CDS)

ATGGCAGCCAGAGGGCACACAGAGAGAGGAGGTCAGTTAAAATCACCGTGTCGGTCGGATACGTATATAGACACTGAGAATCAACAGCAGTTTCCGGCCGCCCAGACGGCGGCGGGGAATAGACACAGCCATTTACACGGTGGTTCGACGTTTTCCAAAGGCGGCTCCGATGAATCGGAGGTGAAAAGGCAAAAAAGGATAGCGAAGTACAAGGCTTACGCTGTAGAAAGCAAATTCAAGGCGTCGATTAGGAGTGGGATTCGGTGGGTAAAAATCAAGTGTGGTGACCTTCTTCGTCGTTGA

Protein sequence

MAARGHTERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR
Homology
BLAST of Carg18871 vs. NCBI nr
Match: KAG7026338.1 (hypothetical protein SDJN02_12839, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.1 bits (510), Expect = 4.6e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MAARGHTERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDESE 60
           MAARGHTERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDESE
Sbjct: 1   MAARGHTERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDESE 60

Query: 61  VKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 101
           VKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR
Sbjct: 61  VKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 100

BLAST of Carg18871 vs. NCBI nr
Match: KAG6593998.1 (hypothetical protein SDJN03_13474, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.9 bits (442), Expect = 3.6e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MAARGHTERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDESE 60
          MAARGHTERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDESE
Sbjct: 1  MAARGHTERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDESE 60

Query: 61 VKRQKRIAKYKAYAVESKFKASIRSGIR 89
          VKRQKRIAKYKAYAVESKFKASIRSGIR
Sbjct: 61 VKRQKRIAKYKAYAVESKFKASIRSGIR 88

BLAST of Carg18871 vs. NCBI nr
Match: KGN47400.1 (hypothetical protein Csa_023055 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 4.2e-25
Identity = 66/100 (66.00%), Postives = 74/100 (74.00%), Query Frame = 0

Query: 1   MAARGHTERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDESE 60
           MAA+G+ ERGG LKSPCRSDTY           A   A N HSHLHGGS+    G DE E
Sbjct: 1   MAAKGNRERGGVLKSPCRSDTY----------TAAPTAWNTHSHLHGGSSSVSNGHDEPE 60

Query: 61  VKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 101
           VKRQ+RIAKYKAYAVESK K+S+RSGIRWVKIKC +LL+R
Sbjct: 61  VKRQRRIAKYKAYAVESKLKSSLRSGIRWVKIKCNELLQR 90

BLAST of Carg18871 vs. NCBI nr
Match: KAG6575094.1 (hypothetical protein SDJN03_25733, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013667.1 hypothetical protein SDJN02_23834, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.8 bits (268), Expect = 5.3e-20
Identity = 59/100 (59.00%), Postives = 69/100 (69.00%), Query Frame = 0

Query: 1   MAARGHTERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDESE 60
           MAA G+  RG +LK PCRSDTY+ +EN  Q PAA TAA +                DE E
Sbjct: 1   MAANGNRGRGRELKKPCRSDTYVSSEN-HQLPAASTAACH----------------DEPE 60

Query: 61  VKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 101
            KRQ+R+AKYKAYAVESKFKAS+R+GIRWVKIKC +LL R
Sbjct: 61  AKRQRRVAKYKAYAVESKFKASLRNGIRWVKIKCSELLNR 83

BLAST of Carg18871 vs. NCBI nr
Match: XP_022138799.1 (uncharacterized protein LOC111009876 [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 9.1e-20
Identity = 62/107 (57.94%), Postives = 72/107 (67.29%), Query Frame = 0

Query: 1   MAARGHTERGGQLKSP--CRSDTYIDTEN-----QQQFPAAQTAAGNRHSHLHGGSTFSK 60
           MA  G+ ERG + KS   C SD Y +  N      Q+FPAA     N H H+HGGS+FS 
Sbjct: 1   MATGGNRERGSEFKSAYICSSDNYGNEMNGRSQVNQRFPAAW---NNTHGHMHGGSSFS- 60

Query: 61  GGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 101
           GG DE E KRQ+RIAKYKAYAVESK K+S R+GIRWVKIKC D+  R
Sbjct: 61  GGYDEPEAKRQRRIAKYKAYAVESKLKSSFRNGIRWVKIKCNDIFHR 103

BLAST of Carg18871 vs. ExPASy TrEMBL
Match: A0A0A0KCE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G312030 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.0e-25
Identity = 66/100 (66.00%), Postives = 74/100 (74.00%), Query Frame = 0

Query: 1   MAARGHTERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDESE 60
           MAA+G+ ERGG LKSPCRSDTY           A   A N HSHLHGGS+    G DE E
Sbjct: 1   MAAKGNRERGGVLKSPCRSDTY----------TAAPTAWNTHSHLHGGSSSVSNGHDEPE 60

Query: 61  VKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 101
           VKRQ+RIAKYKAYAVESK K+S+RSGIRWVKIKC +LL+R
Sbjct: 61  VKRQRRIAKYKAYAVESKLKSSLRSGIRWVKIKCNELLQR 90

BLAST of Carg18871 vs. ExPASy TrEMBL
Match: A0A6J1CB45 (uncharacterized protein LOC111009876 OS=Momordica charantia OX=3673 GN=LOC111009876 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.4e-20
Identity = 62/107 (57.94%), Postives = 72/107 (67.29%), Query Frame = 0

Query: 1   MAARGHTERGGQLKSP--CRSDTYIDTEN-----QQQFPAAQTAAGNRHSHLHGGSTFSK 60
           MA  G+ ERG + KS   C SD Y +  N      Q+FPAA     N H H+HGGS+FS 
Sbjct: 1   MATGGNRERGSEFKSAYICSSDNYGNEMNGRSQVNQRFPAAW---NNTHGHMHGGSSFS- 60

Query: 61  GGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 101
           GG DE E KRQ+RIAKYKAYAVESK K+S R+GIRWVKIKC D+  R
Sbjct: 61  GGYDEPEAKRQRRIAKYKAYAVESKLKSSFRNGIRWVKIKCNDIFHR 103

BLAST of Carg18871 vs. ExPASy TrEMBL
Match: A0A5D3BVC0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00180 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.0e-17
Identity = 56/101 (55.45%), Postives = 68/101 (67.33%), Query Frame = 0

Query: 1   MAARGHTERGGQLKSPCRSDTYI-DTENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDES 60
           MA +G+ E GG LKS CRSD Y   ++N Q+F AA TA           ++    G DE 
Sbjct: 1   MAGKGNREGGGVLKSTCRSDMYTSSSDNPQRFTAAPTA---------WNTSSVSNGHDEQ 60

Query: 61  EVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 101
           EVKRQ+RIAKYKAYAVESK K+S+R+GIRWVKIK  +LL R
Sbjct: 61  EVKRQRRIAKYKAYAVESKLKSSLRNGIRWVKIKYSELLHR 92

BLAST of Carg18871 vs. ExPASy TrEMBL
Match: I1GQX4 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_1g16830v3 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.5e-07
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0

Query: 47  GGSTFSKGGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 101
           G S+    G D++E+KR+ R+A YKAYAVE K KASIR GIRW+K KC  ++ R
Sbjct: 49  GSSSSWLAGPDQAEMKRRGRVASYKAYAVEGKVKASIRRGIRWIKTKCSHIVHR 102

BLAST of Carg18871 vs. ExPASy TrEMBL
Match: A0A6A6LTE9 (C2H2-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_037828 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 49  STFSKGGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLL 99
           +T +  G  + E+KR+KRIAKYK YAVE KFKAS ++G+RW+K KC +++
Sbjct: 232 TTSTPWGFSDPEMKRKKRIAKYKVYAVEGKFKASFKNGLRWIKNKCSEII 281

BLAST of Carg18871 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-09
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 0

Query: 32  PAAQTAAGNRHSHLHGGSTFSKGGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVK 91
           P  + AAG  ++     S+   GG  ++E+KR+KRIA+YKAY VE K K+++++G RW+K
Sbjct: 45  PPGKVAAGRSNA----SSSLRIGGLSDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIK 104

Query: 92  IKCGDLLRR 101
            KC  ++ R
Sbjct: 105 NKCCQIVHR 109

BLAST of Carg18871 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 52.4 bits (124), Expect = 2.5e-07
Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 0

Query: 41  RHSHLHGGSTFSKGGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLL 99
           R S  H  ST  KG  ++ E+KR++R+AKYK Y+ E K K ++R   +W+KI+C  ++
Sbjct: 66  RRSSSH--STLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKII 121

BLAST of Carg18871 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 47.4 bits (111), Expect = 8.0e-06
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 0

Query: 49  STFSKGGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLL 99
           S+ S  G  + +++R+KR+  Y+AY VE K K S R   +W+K KC  LL
Sbjct: 66  SSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLL 115

BLAST of Carg18871 vs. TAIR 10
Match: AT3G62640.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 17/34 (50.00%), Postives = 26/34 (76.47%), Query Frame = 0

Query: 58  ESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVK 92
           ++E KR+KRIA YK YA+E K K++++ G  W+K
Sbjct: 68  DAETKRKKRIATYKTYALEGKVKSTVKKGFHWIK 101

BLAST of Carg18871 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 41.6 bits (96), Expect = 4.4e-04
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 0

Query: 55 GSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVK 92
          G  + E++R+KR+A YK Y VE K K S R+  RW+K
Sbjct: 58 GITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLK 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7026338.14.6e-48100.00hypothetical protein SDJN02_12839, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6593998.13.6e-40100.00hypothetical protein SDJN03_13474, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN47400.14.2e-2566.00hypothetical protein Csa_023055 [Cucumis sativus][more]
KAG6575094.15.3e-2059.00hypothetical protein SDJN03_25733, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022138799.19.1e-2057.94uncharacterized protein LOC111009876 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KCE92.0e-2566.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G312030 PE=4 SV=1[more]
A0A6J1CB454.4e-2057.94uncharacterized protein LOC111009876 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A5D3BVC06.0e-1755.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
I1GQX49.5e-0755.56Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_1g16830v3 P... [more]
A0A6A6LTE91.6e-0654.00C2H2-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_03782... [more]
Match NameE-valueIdentityDescription
AT2G47480.12.7e-0942.03Protein of unknown function (DUF3511) [more]
AT3G05725.12.5e-0741.38Protein of unknown function (DUF3511) [more]
AT2G19460.18.0e-0642.00Protein of unknown function (DUF3511) [more]
AT3G62640.11.2e-0450.00Protein of unknown function (DUF3511) [more]
AT5G11970.14.4e-0448.65Protein of unknown function (DUF3511) [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 57..98
e-value: 4.7E-18
score: 64.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..63
NoneNo IPR availablePANTHERPTHR33193DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATEDcoord: 14..96
NoneNo IPR availablePANTHERPTHR33193:SF41SUBFAMILY NOT NAMEDcoord: 14..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18871-RACarg18871-RAmRNA