Carg18780 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTGCAGGTACTGTAGCATATGCGTTGTTAATACTGAGGGCGAGAGAGAGCATGATTTTTCTCTTTTTTTGGGGTGAATTTATGTTAGTTTCGAAGAGGCGAGGGATTAGAGAATTTGTATCATGTCAAATGGTTTAGTGAGTTAAGATTCTTGATTGTTGCTGGTAAAATATATATACAGTTCTGATCGGGGATCGGTTCTTTAAGGAGCTGCATTTTTAGCCTTTTTCAGACATCTATCTTATTCGGAAGAATGAAAAGATTTGAAAATAGTTGGATATGCTTGCAGAATCTCAACTCTAAATAGGAGTTTCTATCAATTGATTGAAACCAGTGAATGGATTGGGTTTGAGCAATCTGTGGGTTGACTGTGATGTTTTTATTCCATTTGCTTTACATGTCTCTTAGTTGAGCTTAGTCTTCAATGTAGAAAGAGTTGAATTACTTGATGACTATAGAGAATGATTTGAAAGGGAAAATTCATGTTTTTATTCCATTTGCTTATCAGTTGCTTAAACACGATCACCGGATTTTTAAAATTTACATAAATGACTGATAGTTTTCACTCTTTTCAATCTTATTGGGTTCAGACTAATTGTGCTTTAGTCTTTTTCGTTTTACTATAGCTTGGTATATCAGGCAATGATGGCCATCCTTTGCGTTAGCTTCTCATTGCAAGTTTTGTGATCTGTGAAAGAACTATTTAGCGGTGCTTAGCTTTGTGAGTAATATTGATATTACCTGGAATTCATATTGTTTCTTCTTTGAGTTTTAGTGGATATATAATGAAGGGATAATTTGCTAAGAGGAGTTAATGAAAACCTTCAAATGCTTTGGTGATGAAAAAGAAGATAATGATTACAACGAGCTTACATAGAATGGATATATTTTCTGTTTTAGCTAAATTGATTTGGTGAGAGCTATTGTGATCTTTGCAGGTGGTTCCTTTGGGGGGAATAGAGGATTGAGACCGGTACCCCCAGAAAAAGGAGTCTTCCCTTTGGATCATATGCACCTCTGCGACCTGGTATTTCTTTTTAGAGCACTATTGTTTTCACCTAGGATATGTGGTTTTTGGGATTCTTTTGAAGGTTTCTTTGTGTTCATTGCTTGTTTCATGATGCATGAGCTTCATTGCAGGAGAAGAAAGAATACCTCAATTGTCTTAAAACGTCTGGTCACCAATCTGAAAAATGCAGGCACTTATCAAAAAAATACCTTCAATGTCGTATGGAAAAGTAAGACTGTTGAAATTTCTATATTATGTTTTTGTATTAATAAGTGTTGATTTGCTCTCTGTATTCTAGATTCATAAACTTTTGTTTGTGGGAACCTGGGTTATTGTTATCTTTCAATCCTGATGTTTTACACACCAATACACCACTATTAGCTGAAATGGTGGCATAAATGAATGTATATGAACAAACCCTACATCCATATACCAATACCAGTAGAACAGCAAGAGCTATCATTGTGATCTAACAAAAAAGGAAAAAAAGAGGTGCATGGTGCAAGTAGCTATAAGTTCCGCCTTTCTGAGGCTCTGCCAACTTTCCTTCCTTGTCTAGCTTAGCTACAAGCCAACTAACTCATATGCCCTGAAAACTAGGAATGAACCTTTCCCTCGTTTTCTAACAACTTCTATATACTTCATCAATCTATCATTCTACCCTTATAGCCCAAGCCTACCGCTTGTAGATATTGTCCGCTTTGGCCTGTTACGTATCGCCGTCAGACTCATACGTATACTAGGGAGAGGTTTCCACACCCTTGTAAAGAATGTTTCGTTCCTCTTTCCAACTGACGTGGGATTTCACATTTACTCTTCCTGTCATATTCCTTTGGAGATGCAGTTTGTTCTTTTGAACGGTTTTGGTTCAACTTTGGTTACATTGGTCTAGCACAAACTAGAGAGTAACTGGAAACAGAGTGCATTATTCATTTCTTTTCCTCTTATCTTACGGCAAATAAGGGGGACACACTCGATTGATATTGTTATGAATACTTGCTACCAAAATTATTGGTCGTAGTTTGTGTGTGCTACCCATCCAGTTTCTTTTCTCATGGGTTTGAGCTTTGCTATTTCTTCTCTAACACAGCTCGGCTGTATGAGTATGGTCATTCATGAGATTTCATTGGGAACTTGCAGGAATTTAATGGCAAAGCAAGACATGGAAGAACTAGGATTCGGGAATTTGAGTCAGCCCAGTTTGTCTGGCGATAAATTGGAACAAGTTTAA ATGAGTGCAGGTGGTTCCTTTGGGGGGAATAGAGGATTGAGACCGGTACCCCCAGAAAAAGGAGTCTTCCCTTTGGATCATATGCACCTCTGCGACCTGGAGAAGAAAGAATACCTCAATTGTCTTAAAACGTCTGGTCACCAATCTGAAAAATGCAGGCACTTATCAAAAAAATACCTTCAATGTCGTATGGAAAAGAATTTAATGGCAAAGCAAGACATGGAAGAACTAGGATTCGGGAATTTGAGTCAGCCCAGTTTGTCTGGCGATAAATTGGAACAAGTTTAA ATGAGTGCAGGTGGTTCCTTTGGGGGGAATAGAGGATTGAGACCGGTACCCCCAGAAAAAGGAGTCTTCCCTTTGGATCATATGCACCTCTGCGACCTGGAGAAGAAAGAATACCTCAATTGTCTTAAAACGTCTGGTCACCAATCTGAAAAATGCAGGCACTTATCAAAAAAATACCTTCAATGTCGTATGGAAAAGAATTTAATGGCAAAGCAAGACATGGAAGAACTAGGATTCGGGAATTTGAGTCAGCCCAGTTTGTCTGGCGATAAATTGGAACAAGTTTAA MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV Homology
BLAST of Carg18780 vs. NCBI nr
Match: KAG7025816.1 (COX19-2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 199.9 bits (507), Expect = 9.8e-48 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of Carg18780 vs. NCBI nr
Match: KAG6593473.1 (hypothetical protein SDJN03_12949, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 197.6 bits (501), Expect = 4.9e-47 Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of Carg18780 vs. NCBI nr
Match: XP_022964209.1 (cytochrome c oxidase assembly protein COX19-like isoform X2 [Cucurbita moschata] >XP_023513825.1 cytochrome c oxidase assembly protein COX19-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 197.6 bits (501), Expect = 4.9e-47 Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of Carg18780 vs. NCBI nr
Match: XP_023000411.1 (cytochrome c oxidase assembly protein COX19-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 195.7 bits (496), Expect = 1.9e-46 Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 0
BLAST of Carg18780 vs. NCBI nr
Match: XP_022964208.1 (cytochrome c oxidase assembly protein COX19-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 192.2 bits (487), Expect = 2.0e-45 Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0
BLAST of Carg18780 vs. ExPASy Swiss-Prot
Match: A8E4L1 (Cytochrome c oxidase assembly protein COX19 OS=Bos taurus OX=9913 GN=COX19 PE=3 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 2.3e-15 Identity = 37/82 (45.12%), Postives = 59/82 (71.95%), Query Frame = 0
BLAST of Carg18780 vs. ExPASy Swiss-Prot
Match: Q4P821 (Cytochrome c oxidase assembly protein COX19 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=COX19 PE=3 SV=2) HSP 1 Score: 81.3 bits (199), Expect = 6.7e-15 Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 0
BLAST of Carg18780 vs. ExPASy Swiss-Prot
Match: Q49B96 (Cytochrome c oxidase assembly protein COX19 OS=Homo sapiens OX=9606 GN=COX19 PE=1 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 1.5e-14 Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = 0
BLAST of Carg18780 vs. ExPASy Swiss-Prot
Match: O14056 (Cytochrome c oxidase assembly protein cox19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cox19 PE=3 SV=2) HSP 1 Score: 79.7 bits (195), Expect = 1.9e-14 Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 0
BLAST of Carg18780 vs. ExPASy Swiss-Prot
Match: P0CM87 (Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=COX19 PE=3 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 7.4e-14 Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 0
BLAST of Carg18780 vs. ExPASy TrEMBL
Match: A0A6J1HMG5 (cytochrome c oxidase assembly protein COX19-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464297 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 2.4e-47 Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of Carg18780 vs. ExPASy TrEMBL
Match: A0A6J1KFT4 (cytochrome c oxidase assembly protein COX19-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111494670 PE=4 SV=1) HSP 1 Score: 195.7 bits (496), Expect = 9.0e-47 Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 0
BLAST of Carg18780 vs. ExPASy TrEMBL
Match: A0A6J1HK56 (cytochrome c oxidase assembly protein COX19-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464297 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 9.9e-46 Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0
BLAST of Carg18780 vs. ExPASy TrEMBL
Match: A0A6J1KI94 (cytochrome c oxidase assembly protein COX19-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494670 PE=4 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 3.8e-45 Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0
BLAST of Carg18780 vs. ExPASy TrEMBL
Match: A0A5A7UTU4 (Cytochrome c oxidase assembly protein COX19-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G00460 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 5.4e-44 Identity = 87/95 (91.58%), Postives = 93/95 (97.89%), Query Frame = 0
BLAST of Carg18780 vs. TAIR 10
Match: AT1G69750.1 (cytochrome c oxidase 19-2 ) HSP 1 Score: 149.4 bits (376), Expect = 1.4e-36 Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 0
BLAST of Carg18780 vs. TAIR 10
Match: AT1G66590.1 (cytochrome c oxidase 19-1 ) HSP 1 Score: 149.4 bits (376), Expect = 1.4e-36 Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 0
BLAST of Carg18780 vs. TAIR 10
Match: AT1G66590.2 (cytochrome c oxidase 19-1 ) HSP 1 Score: 147.1 bits (370), Expect = 7.0e-36 Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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