Carg18780 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18780
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncytochrome c oxidase assembly protein COX19-like
LocationCarg_Chr08: 3918330 .. 3920572 (+)
RNA-Seq ExpressionCarg18780
SyntenyCarg18780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGCAGGTACTGTAGCATATGCGTTGTTAATACTGAGGGCGAGAGAGAGCATGATTTTTCTCTTTTTTTGGGGTGAATTTATGTTAGTTTCGAAGAGGCGAGGGATTAGAGAATTTGTATCATGTCAAATGGTTTAGTGAGTTAAGATTCTTGATTGTTGCTGGTAAAATATATATACAGTTCTGATCGGGGATCGGTTCTTTAAGGAGCTGCATTTTTAGCCTTTTTCAGACATCTATCTTATTCGGAAGAATGAAAAGATTTGAAAATAGTTGGATATGCTTGCAGAATCTCAACTCTAAATAGGAGTTTCTATCAATTGATTGAAACCAGTGAATGGATTGGGTTTGAGCAATCTGTGGGTTGACTGTGATGTTTTTATTCCATTTGCTTTACATGTCTCTTAGTTGAGCTTAGTCTTCAATGTAGAAAGAGTTGAATTACTTGATGACTATAGAGAATGATTTGAAAGGGAAAATTCATGTTTTTATTCCATTTGCTTATCAGTTGCTTAAACACGATCACCGGATTTTTAAAATTTACATAAATGACTGATAGTTTTCACTCTTTTCAATCTTATTGGGTTCAGACTAATTGTGCTTTAGTCTTTTTCGTTTTACTATAGCTTGGTATATCAGGCAATGATGGCCATCCTTTGCGTTAGCTTCTCATTGCAAGTTTTGTGATCTGTGAAAGAACTATTTAGCGGTGCTTAGCTTTGTGAGTAATATTGATATTACCTGGAATTCATATTGTTTCTTCTTTGAGTTTTAGTGGATATATAATGAAGGGATAATTTGCTAAGAGGAGTTAATGAAAACCTTCAAATGCTTTGGTGATGAAAAAGAAGATAATGATTACAACGAGCTTACATAGAATGGATATATTTTCTGTTTTAGCTAAATTGATTTGGTGAGAGCTATTGTGATCTTTGCAGGTGGTTCCTTTGGGGGGAATAGAGGATTGAGACCGGTACCCCCAGAAAAAGGAGTCTTCCCTTTGGATCATATGCACCTCTGCGACCTGGTATTTCTTTTTAGAGCACTATTGTTTTCACCTAGGATATGTGGTTTTTGGGATTCTTTTGAAGGTTTCTTTGTGTTCATTGCTTGTTTCATGATGCATGAGCTTCATTGCAGGAGAAGAAAGAATACCTCAATTGTCTTAAAACGTCTGGTCACCAATCTGAAAAATGCAGGCACTTATCAAAAAAATACCTTCAATGTCGTATGGAAAAGTAAGACTGTTGAAATTTCTATATTATGTTTTTGTATTAATAAGTGTTGATTTGCTCTCTGTATTCTAGATTCATAAACTTTTGTTTGTGGGAACCTGGGTTATTGTTATCTTTCAATCCTGATGTTTTACACACCAATACACCACTATTAGCTGAAATGGTGGCATAAATGAATGTATATGAACAAACCCTACATCCATATACCAATACCAGTAGAACAGCAAGAGCTATCATTGTGATCTAACAAAAAAGGAAAAAAAGAGGTGCATGGTGCAAGTAGCTATAAGTTCCGCCTTTCTGAGGCTCTGCCAACTTTCCTTCCTTGTCTAGCTTAGCTACAAGCCAACTAACTCATATGCCCTGAAAACTAGGAATGAACCTTTCCCTCGTTTTCTAACAACTTCTATATACTTCATCAATCTATCATTCTACCCTTATAGCCCAAGCCTACCGCTTGTAGATATTGTCCGCTTTGGCCTGTTACGTATCGCCGTCAGACTCATACGTATACTAGGGAGAGGTTTCCACACCCTTGTAAAGAATGTTTCGTTCCTCTTTCCAACTGACGTGGGATTTCACATTTACTCTTCCTGTCATATTCCTTTGGAGATGCAGTTTGTTCTTTTGAACGGTTTTGGTTCAACTTTGGTTACATTGGTCTAGCACAAACTAGAGAGTAACTGGAAACAGAGTGCATTATTCATTTCTTTTCCTCTTATCTTACGGCAAATAAGGGGGACACACTCGATTGATATTGTTATGAATACTTGCTACCAAAATTATTGGTCGTAGTTTGTGTGTGCTACCCATCCAGTTTCTTTTCTCATGGGTTTGAGCTTTGCTATTTCTTCTCTAACACAGCTCGGCTGTATGAGTATGGTCATTCATGAGATTTCATTGGGAACTTGCAGGAATTTAATGGCAAAGCAAGACATGGAAGAACTAGGATTCGGGAATTTGAGTCAGCCCAGTTTGTCTGGCGATAAATTGGAACAAGTTTAA

mRNA sequence

ATGAGTGCAGGTGGTTCCTTTGGGGGGAATAGAGGATTGAGACCGGTACCCCCAGAAAAAGGAGTCTTCCCTTTGGATCATATGCACCTCTGCGACCTGGAGAAGAAAGAATACCTCAATTGTCTTAAAACGTCTGGTCACCAATCTGAAAAATGCAGGCACTTATCAAAAAAATACCTTCAATGTCGTATGGAAAAGAATTTAATGGCAAAGCAAGACATGGAAGAACTAGGATTCGGGAATTTGAGTCAGCCCAGTTTGTCTGGCGATAAATTGGAACAAGTTTAA

Coding sequence (CDS)

ATGAGTGCAGGTGGTTCCTTTGGGGGGAATAGAGGATTGAGACCGGTACCCCCAGAAAAAGGAGTCTTCCCTTTGGATCATATGCACCTCTGCGACCTGGAGAAGAAAGAATACCTCAATTGTCTTAAAACGTCTGGTCACCAATCTGAAAAATGCAGGCACTTATCAAAAAAATACCTTCAATGTCGTATGGAAAAGAATTTAATGGCAAAGCAAGACATGGAAGAACTAGGATTCGGGAATTTGAGTCAGCCCAGTTTGTCTGGCGATAAATTGGAACAAGTTTAA

Protein sequence

MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV
Homology
BLAST of Carg18780 vs. NCBI nr
Match: KAG7025816.1 (COX19-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.9 bits (507), Expect = 9.8e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0

Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL
Sbjct: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
          QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV
Sbjct: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 95

BLAST of Carg18780 vs. NCBI nr
Match: KAG6593473.1 (hypothetical protein SDJN03_12949, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197.6 bits (501), Expect = 4.9e-47
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0

Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL
Sbjct: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
          QCRMEKNLMAKQDM ELGFGNLSQPSLSGDKLEQV
Sbjct: 61 QCRMEKNLMAKQDMAELGFGNLSQPSLSGDKLEQV 95

BLAST of Carg18780 vs. NCBI nr
Match: XP_022964209.1 (cytochrome c oxidase assembly protein COX19-like isoform X2 [Cucurbita moschata] >XP_023513825.1 cytochrome c oxidase assembly protein COX19-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 4.9e-47
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0

Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL
Sbjct: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
          QCRMEKNLMAKQDM ELGFGNLSQPSLSGDKLEQV
Sbjct: 61 QCRMEKNLMAKQDMAELGFGNLSQPSLSGDKLEQV 95

BLAST of Carg18780 vs. NCBI nr
Match: XP_023000411.1 (cytochrome c oxidase assembly protein COX19-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 195.7 bits (496), Expect = 1.9e-46
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 0

Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL
Sbjct: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
          QCRMEKNLMAKQDM ELGFGNLSQPSL GDKLEQV
Sbjct: 61 QCRMEKNLMAKQDMAELGFGNLSQPSLPGDKLEQV 95

BLAST of Carg18780 vs. NCBI nr
Match: XP_022964208.1 (cytochrome c oxidase assembly protein COX19-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 192.2 bits (487), Expect = 2.0e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0

Query: 4   GGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCR 63
           GGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCR
Sbjct: 13  GGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCR 72

Query: 64  MEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
           MEKNLMAKQDM ELGFGNLSQPSLSGDKLEQV
Sbjct: 73  MEKNLMAKQDMAELGFGNLSQPSLSGDKLEQV 104

BLAST of Carg18780 vs. ExPASy Swiss-Prot
Match: A8E4L1 (Cytochrome c oxidase assembly protein COX19 OS=Bos taurus OX=9913 GN=COX19 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.3e-15
Identity = 37/82 (45.12%), Postives = 59/82 (71.95%), Query Frame = 0

Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MS   +F G++  +P PP+KG FPLDH   C   K++++ CL+ +  ++  CR+ SK+YL
Sbjct: 1  MSTAMNF-GSKSFQPRPPDKGSFPLDHFGECKSFKEKFMKCLRDNNFENALCRNESKEYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNL 83
          +CRME+ LMA++ +E+LGFG+L
Sbjct: 61 ECRMERQLMAQEPLEKLGFGDL 81

BLAST of Carg18780 vs. ExPASy Swiss-Prot
Match: Q4P821 (Cytochrome c oxidase assembly protein COX19 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=COX19 PE=3 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 6.7e-15
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 0

Query: 17 PPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCRMEKNLMAKQDMEE 76
          PPE+G FPLDH   C    +EY+NC+K + + + KCRHLS+ YLQCRM+K LM + +M+ 
Sbjct: 16 PPERGSFPLDHDGECKSVMQEYMNCIKYNRNDNGKCRHLSRAYLQCRMDKGLMEQDNMDN 75

Query: 77 LGFGNLSQPSLSGDK 92
          LGF ++  P+ +  K
Sbjct: 76 LGFKDVVDPASTETK 90

BLAST of Carg18780 vs. ExPASy Swiss-Prot
Match: Q49B96 (Cytochrome c oxidase assembly protein COX19 OS=Homo sapiens OX=9606 GN=COX19 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-14
Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = 0

Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MS   +F G +  +P PP+KG FPLDH+  C   K++++ CL  +  ++  CR  SK+YL
Sbjct: 1  MSTAMNF-GTKSFQPRPPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKEYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLS 84
          +CRME+ LM ++ +E+LGFG+L+
Sbjct: 61 ECRMERKLMLQEPLEKLGFGDLT 82

BLAST of Carg18780 vs. ExPASy Swiss-Prot
Match: O14056 (Cytochrome c oxidase assembly protein cox19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cox19 PE=3 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-14
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 0

Query: 6  SFGGNRGLRPV----PPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQ 65
          SFG   G  P+    PPE+G FPLDH   C    K+YL C+K      E+CR L+KKYLQ
Sbjct: 2  SFGAAGGSLPMTTREPPERGSFPLDHFGECTHVMKQYLECIKVKRENQEECRLLAKKYLQ 61

Query: 66 CRMEKNLMAKQDMEELGF---GNLSQPSLS 89
          CRM+  L  K DM+ LGF    N +  SLS
Sbjct: 62 CRMDTGLFGKDDMKNLGFHGDENATSTSLS 91

BLAST of Carg18780 vs. ExPASy Swiss-Prot
Match: P0CM87 (Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=COX19 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.4e-14
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 0

Query: 14 RPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCRMEKNLMAKQD 73
          +P PP +G FPLDH   C      YL C+K + + + KCR  SK+YL+CRM+K LMA+ D
Sbjct: 13 KPSPPARGSFPLDHDGECKAFMISYLKCMKENANDNGKCRLFSKQYLECRMDKGLMARDD 72

Query: 74 MEELGFGNLSQPS 87
          M  LG G++  PS
Sbjct: 73 MANLGLGDVVDPS 85

BLAST of Carg18780 vs. ExPASy TrEMBL
Match: A0A6J1HMG5 (cytochrome c oxidase assembly protein COX19-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464297 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.4e-47
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0

Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL
Sbjct: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
          QCRMEKNLMAKQDM ELGFGNLSQPSLSGDKLEQV
Sbjct: 61 QCRMEKNLMAKQDMAELGFGNLSQPSLSGDKLEQV 95

BLAST of Carg18780 vs. ExPASy TrEMBL
Match: A0A6J1KFT4 (cytochrome c oxidase assembly protein COX19-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111494670 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.0e-47
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 0

Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL
Sbjct: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
          QCRMEKNLMAKQDM ELGFGNLSQPSL GDKLEQV
Sbjct: 61 QCRMEKNLMAKQDMAELGFGNLSQPSLPGDKLEQV 95

BLAST of Carg18780 vs. ExPASy TrEMBL
Match: A0A6J1HK56 (cytochrome c oxidase assembly protein COX19-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464297 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 9.9e-46
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0

Query: 4   GGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCR 63
           GGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCR
Sbjct: 13  GGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCR 72

Query: 64  MEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
           MEKNLMAKQDM ELGFGNLSQPSLSGDKLEQV
Sbjct: 73  MEKNLMAKQDMAELGFGNLSQPSLSGDKLEQV 104

BLAST of Carg18780 vs. ExPASy TrEMBL
Match: A0A6J1KI94 (cytochrome c oxidase assembly protein COX19-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494670 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.8e-45
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0

Query: 4   GGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCR 63
           GGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCR
Sbjct: 13  GGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCR 72

Query: 64  MEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
           MEKNLMAKQDM ELGFGNLSQPSL GDKLEQV
Sbjct: 73  MEKNLMAKQDMAELGFGNLSQPSLPGDKLEQV 104

BLAST of Carg18780 vs. ExPASy TrEMBL
Match: A0A5A7UTU4 (Cytochrome c oxidase assembly protein COX19-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G00460 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.4e-44
Identity = 87/95 (91.58%), Postives = 93/95 (97.89%), Query Frame = 0

Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGH+SEKCRHLSKKYL
Sbjct: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHKSEKCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
          +CRMEKNLMAKQDM ELGFG++SQ +LSGDKLEQ+
Sbjct: 61 ECRMEKNLMAKQDMTELGFGSVSQANLSGDKLEQL 95

BLAST of Carg18780 vs. TAIR 10
Match: AT1G69750.1 (cytochrome c oxidase 19-2 )

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-36
Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 0

Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MS GG+FGGNRGLRP+PPEKG+FPLDH+H CD EKKEYL CLK+S H+SE+CRHLSKKYL
Sbjct: 1  MSTGGAFGGNRGLRPIPPEKGIFPLDHLHECDAEKKEYLGCLKSSAHKSEQCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDK 92
          QCRM KNLMAKQDM ELGF  + +   + DK
Sbjct: 61 QCRMAKNLMAKQDMAELGFSGVKELDSTEDK 91

BLAST of Carg18780 vs. TAIR 10
Match: AT1G66590.1 (cytochrome c oxidase 19-1 )

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-36
Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 0

Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MS GG+FGGNRGLRP+PPEKG+FPLDH+H CD EKKEYL CLK+S H+SE+CRHLSKKYL
Sbjct: 1  MSTGGAFGGNRGLRPIPPEKGIFPLDHLHECDAEKKEYLGCLKSSAHKSEQCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDK 92
          QCRM KNLMAKQDM ELGF  + +   + DK
Sbjct: 61 QCRMAKNLMAKQDMAELGFSGVKELDSTEDK 91

BLAST of Carg18780 vs. TAIR 10
Match: AT1G66590.2 (cytochrome c oxidase 19-1 )

HSP 1 Score: 147.1 bits (370), Expect = 7.0e-36
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0

Query: 3   AGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQC 62
           AGG+FGGNRGLRP+PPEKG+FPLDH+H CD EKKEYL CLK+S H+SE+CRHLSKKYLQC
Sbjct: 18  AGGAFGGNRGLRPIPPEKGIFPLDHLHECDAEKKEYLGCLKSSAHKSEQCRHLSKKYLQC 77

Query: 63  RMEKNLMAKQDMEELGFGNLSQPSLSGDK 92
           RM KNLMAKQDM ELGF  + +   + DK
Sbjct: 78  RMAKNLMAKQDMAELGFSGVKELDSTEDK 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7025816.19.8e-48100.00COX19-2, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6593473.14.9e-4798.95hypothetical protein SDJN03_12949, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022964209.14.9e-4798.95cytochrome c oxidase assembly protein COX19-like isoform X2 [Cucurbita moschata]... [more]
XP_023000411.11.9e-4697.89cytochrome c oxidase assembly protein COX19-like isoform X2 [Cucurbita maxima][more]
XP_022964208.12.0e-4598.91cytochrome c oxidase assembly protein COX19-like isoform X1 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A8E4L12.3e-1545.12Cytochrome c oxidase assembly protein COX19 OS=Bos taurus OX=9913 GN=COX19 PE=3 ... [more]
Q4P8216.7e-1548.00Cytochrome c oxidase assembly protein COX19 OS=Ustilago maydis (strain 521 / FGS... [more]
Q49B961.5e-1443.37Cytochrome c oxidase assembly protein COX19 OS=Homo sapiens OX=9606 GN=COX19 PE=... [more]
O140561.9e-1447.78Cytochrome c oxidase assembly protein cox19, mitochondrial OS=Schizosaccharomyce... [more]
P0CM877.4e-1447.95Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus neoformans var. neof... [more]
Match NameE-valueIdentityDescription
A0A6J1HMG52.4e-4798.95cytochrome c oxidase assembly protein COX19-like isoform X2 OS=Cucurbita moschat... [more]
A0A6J1KFT49.0e-4797.89cytochrome c oxidase assembly protein COX19-like isoform X2 OS=Cucurbita maxima ... [more]
A0A6J1HK569.9e-4698.91cytochrome c oxidase assembly protein COX19-like isoform X1 OS=Cucurbita moschat... [more]
A0A6J1KI943.8e-4597.83cytochrome c oxidase assembly protein COX19-like isoform X1 OS=Cucurbita maxima ... [more]
A0A5A7UTU45.4e-4491.58Cytochrome c oxidase assembly protein COX19-like OS=Cucumis melo var. makuwa OX=... [more]
Match NameE-valueIdentityDescription
AT1G69750.11.4e-3673.63cytochrome c oxidase 19-2 [more]
AT1G66590.11.4e-3673.63cytochrome c oxidase 19-1 [more]
AT1G66590.27.0e-3674.16cytochrome c oxidase 19-1 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010625CHCHPFAMPF06747CHCHcoord: 31..65
e-value: 2.7E-8
score: 33.7
NoneNo IPR availablePANTHERPTHR47565CYTOCHROME C OXIDASE 19-1coord: 1..85
NoneNo IPR availablePANTHERPTHR47565:SF4CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX19-LIKEcoord: 1..85
NoneNo IPR availablePROSITEPS51808CHCHcoord: 28..70
score: 13.799452
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 27..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18780-RACarg18780-RAmRNA