Carg18396 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTTCTTCAACATCATGAAGAAGAAGCTCGATACCCGTTTTCCAGCCGTGAGCTCTCTTTTTCTGTTGCCTTTTCCGACTGTCTTTCTTTTTATTTTTTTTCGCGCTATTTATCTCATACTGATTTGATTATTTGTCTTGAGTGCCACTGTTTGTGTATATTCTTTATAATTGGGCCGTCGAAATGTATGGTAGCAACAGTTTCCATTTTCGGCCATGGTGGGGTTGGGATTTCGACTTTTTGTTCCGACATGTTATTGTATGTTCTCTTGTTGAGGATGAAGTGTTAATTAGGTCATCATGTCTCATATGTGATGGAAGCAGTTTTGTTTATTTATTCTTTTTTTTTTTTCTCCTAAAGATGATGCCACTAAAACATTTTACCCTATGCACTGTTCCAATAGTTAAAATATGTACAGTGGCGTCGCTTTAATGCGTTTGTTGCTTTGAGAAATAGTTTTATTGAAGGTAATGAACACGGAGAACAACTTGAATGTGAAATTTCTCCATAAAATCTATTGCAAAACGGGCATAGTTTGTTGGAGGAATTATGCCTATGGAAGATGTACCATATAGGTTTTACAGCTTGACTTTATGGTGTTATTTGCTTATTCATTTTTCTTTTCAGAATCTTTGAGATCGTTGTTTTTTCAAATAACCCTTAACTTGACAAGATGTTTGGAAGTGTTTGTTTGAACAATTTTTTATAAAGTGACAAAACTTGTTATTGAGTGCCTCCTATGATCCTAAAGGTAGTTTGTGAACAGACAACCCCGTAATGAAGGATTCAGAAACTCCTGCCTCCTGCAGAGAATGCACCATTACAGGAGCAAAATGAATGGAAATATCTTTGAACATGATCCAAGAAATTAACTCTCCCACCTTAATCATATTTGGAATTTTAGCTTTCCATAAAAGGAAAAAAAAAAAAAACAGCTGAAGCCTCGAGCAGCCGTCAAAGCAGGAGGAAAGATAAAATGTGAACATAGGAATGGCAGGGAACCCTGCTGGAAGGATCAGGGTCCAATCCTAACATCCCTTCTCGGAAAAATAAACGACACACGAACACGCTTGATTTGCACTACCGAAAGAATTCTTGTGCATCTGTTTGGTTAGTTTTCACTCTCCTTGTGAGACACCAAGTTCCATGCCAATGTAGCATCACGCCAACACATTAGTTGATTTATGGTCTCGACAATCAGATGTGTTCTTTTATCACATTTGAATTAGCTTCATGGTTGTTTTTTATTCTTTAACTATTTGAACCTTGTTGTGATCTTTGATTATGAAAGTCGATACAAATAATTTCTATTCATTTTTCCTGTCTGCCTCCAGTGAGTTTTCTTGTGTTCCTTATGCAGTATGATCCTTGTCTGTGGATTTGTGATGGTTCTTCAGGGTGTCTCTTGATTTTGTGTTGAAGTTGGAACTCTCTGTCTTATTTGATTTTTGATATATCAACAAAATAGTTGTCTAGTCTATATCTCAGCAACTGCTTGCTGGTCGTCCCTCTATAGCATTGATAACCTGAGTATTCTGTAACATTTACAGGCTCGGATTAAGAAGATTATGCAGGCTGATGAAGACGTAGGGAAGATTGCTATGGCAGTCCCACTTTTAGTCTGTAAGTACCAACTACCAAATAATGTGATAATTCCCTAGTTGGAGATTGTTACTTGCTTAGGATTGTGCTAGGTACTCTAGAATATATTCAAATGTGAAATAAGAAAATTGGTGAAGATCACCATACAGGATATCAAGCCGTTTGAGAGGGCTGAAAACTCTTCTCACGATTGGTCCTTACCCAAAAAGATAATGATGTCTTTGCATGATCTCCTCCCATATATTCTTCATGCCAAGCTACTAATTGAAAGCAGTTCAATCTCCCTAATTACCCTTCCTATCATAAACACACACAACTGGGGGCTGGGTTGTTTTTGTTTCTTCTCCAAAATGTTGTTTCTAGAATGTGCTCTAGTATGTTGATTATTCTGTTGTTTTTGCAGCAAAAGCTCTGGAACTATTTTTACAAGATTTATGTGACAGGACATATGAGATTACTCTGAAGAGGGGGGCTAAGACAATGAACTCTTTGCACTTGTTAGTAAACTCTCAATTATTGAATTTTGGACATTCCGAGATTTTGTAAATAGGATGTACTTAATTCAACTATCAGTCTACCACTTCTCGATTATGCCATATTGATGTTCAATAGAAAGCCATTGACGGTTCTTTCAAGCCTCTAGGCTCCAGCCTCCAACTATTGATCTAATCTTATTGTTGAGAAAAATGAAATGAGTTTCTTCTTTTATTTCGTCTCAGTCTAAGTGCCATGAAGGAAAAAACAGTTTAATTTTATAGTTTTACCTCTGCTGTTGCCTACCACATTACTTTCTCACACATTCATTGAATTGACAGAAAACAATGCATACAGACGTTTAATGTATTTGATTTCTTGAGGGATGTTGTTGGCAAGGTACCTGATTTAGGTGCCTCTGATGCTGCGGAGGACCGTTGTATTTCGAAACGAAGGTTTGGAAAATAAATGTCTCTCTAGTTGGGTGTAGTGATATATGAGGTATTCATCTTTGATAGTATTTGTGGTTTTTTTCTTTTTGGTCCAGGAAAGTTGAAGATGAAGATGGTGGTAATGATAGTGAAGAAGAGTCCAAAAGGAGTAAGACGGTAAGAATTATTTTCAAAACACATATTTGTGTATCTTGTACTTCGGAAAAACAAAACACGTATTCATGTATCTTGTACTTCGGATAAACAAAACCCATACAGCAATTATGAGATTGTGCTCATTTCATTGCGGTATACCCCTGTTGCAGACAGAGGCTGGTCACAACATTAGTGGCCGAGGAAGGGGTAGAGGCAGAGGTAGAGGTCGTGGGCGTAGTAGTAGGCATTCGGAGAAGGATACAGCCATACATTCTGATAACTTGGAAGAAGATTTGGAAATTCCTAGTCATCCTGGCGACAACCTCGACAAAACTGTGGCAGACAACGGTGTAGCAGAAGCTCGAATGGAGAACGACAATATTCCTATTGACAAAGCTGTAGAACCATCAGTCCGAAACTTCGACTTGAACGTAAACTTGGACGAAGATGGGGACTCAACTTCAATTCCAGTGGCTGCTTCTACAGGTTCACCAGTAAAGCCCCTGACTGACTCGAAACACGACGAGTATCCTGGTTGGTCAGTGGCCGAAATGGAAAAGATGGTTATCGATCCAATTCAACTAGCGAATTTGAATAAGAGTATAGATGATGAGGAAGATTATGACGAAGAAGGTTAGTTATATTAGGATCCTCTTTTTCTATGGATGAGCAATTTGATTCTTTTGCCGCT AGTTCTTCAACATCATGAAGAAGAAGCTCGATACCCGTTTTCCAGCCGCTCGGATTAAGAAGATTATGCAGGCTGATGAAGACGTAGGGAAGATTGCTATGGCAGTCCCACTTTTAGTCTCAAAAGCTCTGGAACTATTTTTACAAGATTTATGTGACAGGACATATGAGATTACTCTGAAGAGGGGGGCTAAGACAATGAACTCTTTGCACTTAAAACAATGCATACAGACGTTTAATGTATTTGATTTCTTGAGGGATGTTGTTGGCAAGGTACCTGATTTAGGTGCCTCTGATGCTGCGGAGGACCGTTGTATTTCGAAACGAAGGAAAGTTGAAGATGAAGATGGTGGTAATGATAGTGAAGAAGAGTCCAAAAGGAGTAAGACGACAGAGGCTGGTCACAACATTAGTGGCCGAGGAAGGGGTAGAGGCAGAGGTAGAGGTCGTGGGCGTAGTAGTAGGCATTCGGAGAAGGATACAGCCATACATTCTGATAACTTGGAAGAAGATTTGGAAATTCCTAGTCATCCTGGCGACAACCTCGACAAAACTGTGGCAGACAACGGTGTAGCAGAAGCTCGAATGGAGAACGACAATATTCCTATTGACAAAGCTGTAGAACCATCAGTCCGAAACTTCGACTTGAACGTAAACTTGGACGAAGATGGGGACTCAACTTCAATTCCAGTGGCTGCTTCTACAGGTTCACCAGTAAAGCCCCTGACTGACTCGAAACACGACGAGTATCCTGGTTGGTCAGTGGCCGAAATGGAAAAGATGGTTATCGATCCAATTCAACTAGCGAATTTGAATAAGAGTATAGATGATGAGGAAGATTATGACGAAGAAGGTTAGTTATATTAGGATCCTCTTTTTCTATGGATGAGCAATTTGATTCTTTTGCCGCT ATGAAGAAGAAGCTCGATACCCGTTTTCCAGCCGCTCGGATTAAGAAGATTATGCAGGCTGATGAAGACGTAGGGAAGATTGCTATGGCAGTCCCACTTTTAGTCTCAAAAGCTCTGGAACTATTTTTACAAGATTTATGTGACAGGACATATGAGATTACTCTGAAGAGGGGGGCTAAGACAATGAACTCTTTGCACTTAAAACAATGCATACAGACGTTTAATGTATTTGATTTCTTGAGGGATGTTGTTGGCAAGGTACCTGATTTAGGTGCCTCTGATGCTGCGGAGGACCGTTGTATTTCGAAACGAAGGAAAGTTGAAGATGAAGATGGTGGTAATGATAGTGAAGAAGAGTCCAAAAGGAGTAAGACGACAGAGGCTGGTCACAACATTAGTGGCCGAGGAAGGGGTAGAGGCAGAGGTAGAGGTCGTGGGCGTAGTAGTAGGCATTCGGAGAAGGATACAGCCATACATTCTGATAACTTGGAAGAAGATTTGGAAATTCCTAGTCATCCTGGCGACAACCTCGACAAAACTGTGGCAGACAACGGTGTAGCAGAAGCTCGAATGGAGAACGACAATATTCCTATTGACAAAGCTGTAGAACCATCAGTCCGAAACTTCGACTTGAACGTAAACTTGGACGAAGATGGGGACTCAACTTCAATTCCAGTGGCTGCTTCTACAGGTTCACCAGTAAAGCCCCTGACTGACTCGAAACACGACGAGTATCCTGGTTGGTCAGTGGCCGAAATGGAAAAGATGGTTATCGATCCAATTCAACTAGCGAATTTGAATAAGAGTATAGATGATGAGGAAGATTATGACGAAGAAGGTTAG MKKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTMNSLHLKQCIQTFNVFDFLRDVVGKVPDLGASDAAEDRCISKRRKVEDEDGGNDSEEESKRSKTTEAGHNISGRGRGRGRGRGRGRSSRHSEKDTAIHSDNLEEDLEIPSHPGDNLDKTVADNGVAEARMENDNIPIDKAVEPSVRNFDLNVNLDEDGDSTSIPVAASTGSPVKPLTDSKHDEYPGWSVAEMEKMVIDPIQLANLNKSIDDEEDYDEEG Homology
BLAST of Carg18396 vs. NCBI nr
Match: XP_022943975.1 (dr1-associated corepressor-like [Cucurbita moschata] >KAG6570454.1 Dr1-associated corepressor, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010316.1 Dr1-associated corepressor [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 540.8 bits (1392), Expect = 6.9e-150 Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0
BLAST of Carg18396 vs. NCBI nr
Match: XP_022986743.1 (dr1-associated corepressor-like [Cucurbita maxima] >XP_022986744.1 dr1-associated corepressor-like [Cucurbita maxima]) HSP 1 Score: 531.9 bits (1369), Expect = 3.2e-147 Identity = 276/280 (98.57%), Postives = 276/280 (98.57%), Query Frame = 0
BLAST of Carg18396 vs. NCBI nr
Match: XP_023512169.1 (dr1-associated corepressor-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 530.8 bits (1366), Expect = 7.2e-147 Identity = 274/280 (97.86%), Postives = 277/280 (98.93%), Query Frame = 0
BLAST of Carg18396 vs. NCBI nr
Match: XP_023512170.1 (dr1-associated corepressor-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 499.6 bits (1285), Expect = 1.8e-137 Identity = 257/263 (97.72%), Postives = 260/263 (98.86%), Query Frame = 0
BLAST of Carg18396 vs. NCBI nr
Match: XP_008449610.1 (PREDICTED: dr1-associated corepressor-like isoform X1 [Cucumis melo]) HSP 1 Score: 477.6 bits (1228), Expect = 7.2e-131 Identity = 247/280 (88.21%), Postives = 262/280 (93.57%), Query Frame = 0
BLAST of Carg18396 vs. ExPASy Swiss-Prot
Match: Q2YDP3 (Dr1-associated corepressor OS=Bos taurus OX=9913 GN=DRAP1 PE=2 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 1.3e-21 Identity = 69/176 (39.20%), Postives = 98/176 (55.68%), Query Frame = 0
BLAST of Carg18396 vs. ExPASy Swiss-Prot
Match: A0JPP1 (Dr1-associated corepressor OS=Rattus norvegicus OX=10116 GN=Drap1 PE=2 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 6.3e-21 Identity = 68/176 (38.64%), Postives = 96/176 (54.55%), Query Frame = 0
BLAST of Carg18396 vs. ExPASy Swiss-Prot
Match: Q9D6N5 (Dr1-associated corepressor OS=Mus musculus OX=10090 GN=Drap1 PE=1 SV=3) HSP 1 Score: 102.4 bits (254), Expect = 8.2e-21 Identity = 68/176 (38.64%), Postives = 97/176 (55.11%), Query Frame = 0
BLAST of Carg18396 vs. ExPASy Swiss-Prot
Match: Q14919 (Dr1-associated corepressor OS=Homo sapiens OX=9606 GN=DRAP1 PE=1 SV=3) HSP 1 Score: 102.1 bits (253), Expect = 1.1e-20 Identity = 68/176 (38.64%), Postives = 96/176 (54.55%), Query Frame = 0
BLAST of Carg18396 vs. ExPASy Swiss-Prot
Match: Q54DA1 (Dr1-associated corepressor homolog OS=Dictyostelium discoideum OX=44689 GN=drap1 PE=3 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 5.3e-20 Identity = 70/178 (39.33%), Postives = 97/178 (54.49%), Query Frame = 0
BLAST of Carg18396 vs. ExPASy TrEMBL
Match: A0A6J1FYE3 (dr1-associated corepressor-like OS=Cucurbita moschata OX=3662 GN=LOC111448540 PE=4 SV=1) HSP 1 Score: 540.8 bits (1392), Expect = 3.3e-150 Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0
BLAST of Carg18396 vs. ExPASy TrEMBL
Match: A0A6J1JHF3 (dr1-associated corepressor-like OS=Cucurbita maxima OX=3661 GN=LOC111484411 PE=4 SV=1) HSP 1 Score: 531.9 bits (1369), Expect = 1.6e-147 Identity = 276/280 (98.57%), Postives = 276/280 (98.57%), Query Frame = 0
BLAST of Carg18396 vs. ExPASy TrEMBL
Match: A0A1S3BMF4 (dr1-associated corepressor-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491444 PE=4 SV=1) HSP 1 Score: 477.6 bits (1228), Expect = 3.5e-131 Identity = 247/280 (88.21%), Postives = 262/280 (93.57%), Query Frame = 0
BLAST of Carg18396 vs. ExPASy TrEMBL
Match: A0A0A0KI73 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G426970 PE=4 SV=1) HSP 1 Score: 476.9 bits (1226), Expect = 5.9e-131 Identity = 248/280 (88.57%), Postives = 261/280 (93.21%), Query Frame = 0
BLAST of Carg18396 vs. ExPASy TrEMBL
Match: A0A1S3BME7 (dr1-associated corepressor-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491444 PE=4 SV=1) HSP 1 Score: 472.6 bits (1215), Expect = 1.1e-129 Identity = 247/280 (88.21%), Postives = 262/280 (93.57%), Query Frame = 0
BLAST of Carg18396 vs. TAIR 10
Match: AT3G12480.1 (nuclear factor Y, subunit C11 ) HSP 1 Score: 230.3 bits (586), Expect = 1.9e-60 Identity = 158/313 (50.48%), Postives = 194/313 (61.98%), Query Frame = 0
BLAST of Carg18396 vs. TAIR 10
Match: AT5G19490.1 (Histone superfamily protein ) HSP 1 Score: 208.4 bits (529), Expect = 7.6e-54 Identity = 142/283 (50.18%), Postives = 171/283 (60.42%), Query Frame = 0
BLAST of Carg18396 vs. TAIR 10
Match: AT5G63470.1 (nuclear factor Y, subunit C4 ) HSP 1 Score: 60.5 bits (145), Expect = 2.6e-09 Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 0
BLAST of Carg18396 vs. TAIR 10
Match: AT5G63470.2 (nuclear factor Y, subunit C4 ) HSP 1 Score: 60.5 bits (145), Expect = 2.6e-09 Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 0
BLAST of Carg18396 vs. TAIR 10
Match: AT3G48590.1 (nuclear factor Y, subunit C1 ) HSP 1 Score: 58.9 bits (141), Expect = 7.4e-09 Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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