Carg17939 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17939
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr10: 991486 .. 992831 (+)
RNA-Seq ExpressionCarg17939
SyntenyCarg17939
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGGTTTTGTGTGTGTTTTACAGTCCGAATTGGCGACTCAAACCCAGCTGCAACACATGCGCCAAAGGAAGTAGCGGCCAATTGCATTCCGCCGGACTTGACCGGCTGGAAAATATGTGCTGTATGTTGTAACCACATGCACGATCCAATTTGTTGCTCAATTCCAACCTTACCCATTGTTTGAACTTGCAAGTCAATGATGCTTGCTTGTTCCCATATTAGAATTGTAACATGTTCTTGTAACTTAGATCTATTTAATGTAATTGCTTGATTGGTCTGAATTCTGGACATTTTCGGAGTATTAGTTCCAAAGCCTCTTAAAAAGTTTATAAACGCTAGATTCTTCATTTTATTACAAGCAATAAATACTGTTCACAAACAATTTCTTTTTCTACATATTTTTGTGCACCTATTAAAAATATTAACAAATGCCTATTTTCGTTCTCTTCCCTGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTGCTTATGTAGTGGTCGGCCTTCCTACTAGGAGACTCGACACCATTTGGGTTACATTCATTTGATTCATCGTTCTTGTGTTGAATTGGATTGCACAGCTGACACTAGCGGATTATTTTTGCAGGATCTCAATAACGAGAGCAGCATGTCTATGCTTAGTTCCTGCAGGACAACGGACTTGTTCTGCGCACACTCAACAAGCAGCGACCAGGGTACTAGCCAACACTGGCATCAGTTCGGGGTCGCTGAAGAATACAGAATACGAACGGCAGGTCGCGCACCTAAGAACACAAATATCATTCGTCAATTTCATCCGAATATGAAACTAGGGATGGGATAGGTTGGCAGTATACTAACCTTGTGGAGTATGGTAGGGCTCTTTCCCCAGCGAAGAACTTGTTGATTCTCAGGATGGAACAGAGCAAAATGGGCAACAATGGACAAAGACTCAAGAAGCAGAAGACCAATCTGAGGATGATCAAGCAGGTTTGAAAGCTTAAAACTAAACGTAACACATAAAGGCGAAAATAAATTAAAAGGGACAAATTATCAAGGCAAAGAATGAAACTGACTTCAATGGATGTGTAAAAATTAGAGAGGACCAGTATCAATGGACTAGCTAGCACCCTAAAACAAAGAAGGAATTGCTAGCTAAGGTTTTTGTAGGGCAGTGGCAGGTGGCCAAGGTTTTTCTAGGCCTTTAATTTATGCAATAGATAAGGAGGAGTACAGATTTTCGCCATCAGTAAACGATCAGTGTTTGAATATTGGCCGCAAGGGAGACAGTCATCCTCGTAATGTGGCGGCGCTCCGTCGTGCCGGAACCTCTGTTCATTTCCACCGCGAGATATAA

mRNA sequence

ATGGTTGGGTTTTGTGTGTGTTTTACAGTCCGAATTGGCGACTCAAACCCAGCTGCAACACATGCGCCAAAGGAAGTAGCGGCCAATTGCATTCCGCCGGACTTGACCGGCTGGAAAATATGTGCTCTGACACTAGCGGATTATTTTTGCAGGATCTCAATAACGAGAGCAGCATGTCTATGCTTAGTTCCTGCAGGACAACGGACTTGTTCTGCGCACACTCAACAAGCAGCGACCAGGGTACTAGCCAACACTGGCATCAGTTCGGGGTCGCTGAAGAATACAGAATACGAACGGCAGGGCTCTTTCCCCAGCGAAGAACTTGTTGATTCTCAGGATGGAACAGAGCAAAATGGGCAACAATGGACAAAGACTCAAGAAGCAGAAGACCAATCTGAGGATGATCAAGCAGATAAGGAGGAGTACAGATTTTCGCCATCAGTAAACGATCAGTGTTTGAATATTGGCCGCAAGGGAGACAGTCATCCTCGTAATGTGGCGGCGCTCCGTCGTGCCGGAACCTCTGTTCATTTCCACCGCGAGATATAA

Coding sequence (CDS)

ATGGTTGGGTTTTGTGTGTGTTTTACAGTCCGAATTGGCGACTCAAACCCAGCTGCAACACATGCGCCAAAGGAAGTAGCGGCCAATTGCATTCCGCCGGACTTGACCGGCTGGAAAATATGTGCTCTGACACTAGCGGATTATTTTTGCAGGATCTCAATAACGAGAGCAGCATGTCTATGCTTAGTTCCTGCAGGACAACGGACTTGTTCTGCGCACACTCAACAAGCAGCGACCAGGGTACTAGCCAACACTGGCATCAGTTCGGGGTCGCTGAAGAATACAGAATACGAACGGCAGGGCTCTTTCCCCAGCGAAGAACTTGTTGATTCTCAGGATGGAACAGAGCAAAATGGGCAACAATGGACAAAGACTCAAGAAGCAGAAGACCAATCTGAGGATGATCAAGCAGATAAGGAGGAGTACAGATTTTCGCCATCAGTAAACGATCAGTGTTTGAATATTGGCCGCAAGGGAGACAGTCATCCTCGTAATGTGGCGGCGCTCCGTCGTGCCGGAACCTCTGTTCATTTCCACCGCGAGATATAA

Protein sequence

MVGFCVCFTVRIGDSNPAATHAPKEVAANCIPPDLTGWKICALTLADYFCRISITRAACLCLVPAGQRTCSAHTQQAATRVLANTGISSGSLKNTEYERQGSFPSEELVDSQDGTEQNGQQWTKTQEAEDQSEDDQADKEEYRFSPSVNDQCLNIGRKGDSHPRNVAALRRAGTSVHFHREI
Homology
[Close]
BLAST of Carg17939 vs. NCBI nr
Match: KAG7023216.1 (hypothetical protein SDJN02_14241, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.8 bits (935), Expect = 4.4e-97
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MVGFCVCFTVRIGDSNPAATHAPKEVAANCIPPDLTGWKICALTLADYFCRISITRAACL 60
           MVGFCVCFTVRIGDSNPAATHAPKEVAANCIPPDLTGWKICALTLADYFCRISITRAACL
Sbjct: 1   MVGFCVCFTVRIGDSNPAATHAPKEVAANCIPPDLTGWKICALTLADYFCRISITRAACL 60

Query: 61  CLVPAGQRTCSAHTQQAATRVLANTGISSGSLKNTEYERQGSFPSEELVDSQDGTEQNGQ 120
           CLVPAGQRTCSAHTQQAATRVLANTGISSGSLKNTEYERQGSFPSEELVDSQDGTEQNGQ
Sbjct: 61  CLVPAGQRTCSAHTQQAATRVLANTGISSGSLKNTEYERQGSFPSEELVDSQDGTEQNGQ 120

Query: 121 QWTKTQEAEDQSEDDQADKEEYRFSPSVNDQCLNIGRKGDSHPRNVAALRRAGTSVHFHR 180
           QWTKTQEAEDQSEDDQADKEEYRFSPSVNDQCLNIGRKGDSHPRNVAALRRAGTSVHFHR
Sbjct: 121 QWTKTQEAEDQSEDDQADKEEYRFSPSVNDQCLNIGRKGDSHPRNVAALRRAGTSVHFHR 180

Query: 181 EI 183
           EI
Sbjct: 181 EI 182

The following BLAST results are available for this feature:
BLAST of Carg17939 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023216.14.4e-97100.00hypothetical protein SDJN02_14241, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg17939 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17939 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17939 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..164

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17939-RACarg17939-RAmRNA