Carg17504 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17504
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGuanine nucleotide-binding protein-like 3-like protein
LocationCarg_Chr12: 11322911 .. 11323485 (+)
RNA-Seq ExpressionCarg17504
SyntenyCarg17504
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAGAAGCGAATTCAGGATCATGGGCTGCAATCTCTTGTCTTCTTCTCGATTTTTCTCTTGCCCGAGTGAGTTTCGTAATTTCTCAGCCCAGATTTATTGTTAAATTCATGCTTTGTTCTTCAGTGTTTTTTTAAGGGAGATGGGTTTTCCTTGTGCCTTTACAAATTCTGACATTTGGTTCTTTAGTCTAAATTTCAAATTTGCAGTAATGGGATTGATTTTTGTGCTAAAAGTTGGTGCATTAATTGTGTGTTTGATCAGTTAACGAAGTGGATGGTTCTCTAAGGAATTTGAGAAGCTCATTTTATGGTGCCGATAAAGTGTTTGACAAAAGTCCTCTGAGAAGAAACATAAAAGGCAATGGTGGTAGCTTGTCTGTGGTGGCCTCAGTGGTTTTCTTCCTCACCCTTCTTCATTTACTTTCAATGTCTATTGTGGCCTTTTCTTTAAGAAGGAAAAAGAAAGCTAACTTTTGGGTTTCACAGCTTGGAAGGAGGGTCAAGGGCAGCCGAGAGACTGTAATACCTGATCCAGATTACAGAATTCCGATAGTCTTACTTGGTGGGTACTAA

mRNA sequence

GAAAAGAAGCGAATTCAGGATCATGGGCTGCAATCTCTTGTCTTCTTCTCGATTTTTCTCTTGCCCGATTAACGAAGTGGATGGTTCTCTAAGGAATTTGAGAAGCTCATTTTATGGTGCCGATAAAGTGTTTGACAAAAGTCCTCTGAGAAGAAACATAAAAGGCAATGGTGGTAGCTTGTCTGTGGTGGCCTCAGTGGTTTTCTTCCTCACCCTTCTTCATTTACTTTCAATGTCTATTGTGGCCTTTTCTTTAAGAAGGAAAAAGAAAGCTAACTTTTGGGTTTCACAGCTTGGAAGGAGGGTCAAGGGCAGCCGAGAGACTGTAATACCTGATCCAGATTACAGAATTCCGATAGTCTTACTTGGTGGGTACTAA

Coding sequence (CDS)

ATGGGCTGCAATCTCTTGTCTTCTTCTCGATTTTTCTCTTGCCCGATTAACGAAGTGGATGGTTCTCTAAGGAATTTGAGAAGCTCATTTTATGGTGCCGATAAAGTGTTTGACAAAAGTCCTCTGAGAAGAAACATAAAAGGCAATGGTGGTAGCTTGTCTGTGGTGGCCTCAGTGGTTTTCTTCCTCACCCTTCTTCATTTACTTTCAATGTCTATTGTGGCCTTTTCTTTAAGAAGGAAAAAGAAAGCTAACTTTTGGGTTTCACAGCTTGGAAGGAGGGTCAAGGGCAGCCGAGAGACTGTAATACCTGATCCAGATTACAGAATTCCGATAGTCTTACTTGGTGGGTACTAA

Protein sequence

MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNIKGNGGSLSVVASVVFFLTLLHLLSMSIVAFSLRRKKKANFWVSQLGRRVKGSRETVIPDPDYRIPIVLLGGY
Homology
[Close]
BLAST of Carg17504 vs. NCBI nr
Match: KAG7021246.1 (hypothetical protein SDJN02_17934 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.0 bits (598), Expect = 3.4e-58
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNIKGNGGSLSVVASVV 60
           MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNIKGNGGSLSVVASVV
Sbjct: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNIKGNGGSLSVVASVV 60

Query: 61  FFLTLLHLLSMSIVAFSLRRKKKANFWVSQLGRRVKGSRETVIPDPDYRIPIVLLGGY 119
           FFLTLLHLLSMSIVAFSLRRKKKANFWVSQLGRRVKGSRETVIPDPDYRIPIVLLGGY
Sbjct: 61  FFLTLLHLLSMSIVAFSLRRKKKANFWVSQLGRRVKGSRETVIPDPDYRIPIVLLGGY 118

[Close]
BLAST of Carg17504 vs. NCBI nr
Match: XP_022938227.1 (uncharacterized protein LOC111444372 [Cucurbita moschata])

HSP 1 Score: 154.1 bits (388), Expect = 7.7e-34
Identity = 84/116 (72.41%), Postives = 84/116 (72.41%), Query Frame = 0 

Query: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNIKGNGGSLSVVASVV 60
           MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRN KGNGGSLSVVASV 
Sbjct: 15  MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNRKGNGGSLSVVASV- 74

Query: 61  FFLTLLHLLSMSIVAFSLRRKKKANFWVSQLGRRVKGSRETVIPDPDYRIPIVLLG 117
                                         LGRRVKGSRETVIPDPDYRIPIVLLG
Sbjct: 75  ------------------------------LGRRVKGSRETVIPDPDYRIPIVLLG 99

[Close]
BLAST of Carg17504 vs. NCBI nr
Match: KAG6586394.1 (hypothetical protein SDJN03_19127, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.1 bits (388), Expect = 7.7e-34
Identity = 84/116 (72.41%), Postives = 84/116 (72.41%), Query Frame = 0 

Query: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNIKGNGGSLSVVASVV 60
           MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRN KGNGGSLSVVASV 
Sbjct: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNRKGNGGSLSVVASV- 60

Query: 61  FFLTLLHLLSMSIVAFSLRRKKKANFWVSQLGRRVKGSRETVIPDPDYRIPIVLLG 117
                                         LGRRVKGSRETVIPDPDYRIPIVLLG
Sbjct: 61  ------------------------------LGRRVKGSRETVIPDPDYRIPIVLLG 85

[Close]
BLAST of Carg17504 vs. NCBI nr
Match: XP_023538214.1 (uncharacterized protein LOC111799055 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-33
Identity = 83/116 (71.55%), Postives = 83/116 (71.55%), Query Frame = 0 

Query: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNIKGNGGSLSVVASVV 60
           MGCNLLSSSRFFSCPI EVDGSLRNLRSSFYGADKVFDKSPLRRNIKGNGGSLS VASV 
Sbjct: 1   MGCNLLSSSRFFSCPIKEVDGSLRNLRSSFYGADKVFDKSPLRRNIKGNGGSLSAVASV- 60

Query: 61  FFLTLLHLLSMSIVAFSLRRKKKANFWVSQLGRRVKGSRETVIPDPDYRIPIVLLG 117
                                         LGRRVKGSRETVIPDPDYRIPIVLLG
Sbjct: 61  ------------------------------LGRRVKGSRETVIPDPDYRIPIVLLG 85

[Close]
BLAST of Carg17504 vs. NCBI nr
Match: XP_022965932.1 (uncharacterized protein LOC111465663 [Cucurbita maxima])

HSP 1 Score: 147.9 bits (372), Expect = 5.5e-32
Identity = 80/116 (68.97%), Postives = 82/116 (70.69%), Query Frame = 0 

Query: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNIKGNGGSLSVVASVV 60
           MGCNLLSSSRFFSCPI EVDGSLRNLRS+FYGADKV+ KSPLRRNIKGNGGSLSVVASV 
Sbjct: 1   MGCNLLSSSRFFSCPIKEVDGSLRNLRSTFYGADKVYGKSPLRRNIKGNGGSLSVVASV- 60

Query: 61  FFLTLLHLLSMSIVAFSLRRKKKANFWVSQLGRRVKGSRETVIPDPDYRIPIVLLG 117
                                          GRRVKGSRETVIPDPDYRIPIVLLG
Sbjct: 61  ------------------------------FGRRVKGSRETVIPDPDYRIPIVLLG 85

[Close]
BLAST of Carg17504 vs. ExPASy TrEMBL
Match: A0A6J1FDH2 (uncharacterized protein LOC111444372 OS=Cucurbita moschata OX=3662 GN=LOC111444372 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.7e-34
Identity = 84/116 (72.41%), Postives = 84/116 (72.41%), Query Frame = 0 

Query: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNIKGNGGSLSVVASVV 60
           MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRN KGNGGSLSVVASV 
Sbjct: 15  MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNRKGNGGSLSVVASV- 74

Query: 61  FFLTLLHLLSMSIVAFSLRRKKKANFWVSQLGRRVKGSRETVIPDPDYRIPIVLLG 117
                                         LGRRVKGSRETVIPDPDYRIPIVLLG
Sbjct: 75  ------------------------------LGRRVKGSRETVIPDPDYRIPIVLLG 99

[Close]
BLAST of Carg17504 vs. ExPASy TrEMBL
Match: A0A6J1HLM9 (uncharacterized protein LOC111465663 OS=Cucurbita maxima OX=3661 GN=LOC111465663 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.7e-32
Identity = 80/116 (68.97%), Postives = 82/116 (70.69%), Query Frame = 0 

Query: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNIKGNGGSLSVVASVV 60
           MGCNLLSSSRFFSCPI EVDGSLRNLRS+FYGADKV+ KSPLRRNIKGNGGSLSVVASV 
Sbjct: 1   MGCNLLSSSRFFSCPIKEVDGSLRNLRSTFYGADKVYGKSPLRRNIKGNGGSLSVVASV- 60

Query: 61  FFLTLLHLLSMSIVAFSLRRKKKANFWVSQLGRRVKGSRETVIPDPDYRIPIVLLG 117
                                          GRRVKGSRETVIPDPDYRIPIVLLG
Sbjct: 61  ------------------------------FGRRVKGSRETVIPDPDYRIPIVLLG 85

[Close]
BLAST of Carg17504 vs. ExPASy TrEMBL
Match: A0A6J1CN08 (uncharacterized protein LOC111012982 OS=Momordica charantia OX=3673 GN=LOC111012982 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.9e-26
Identity = 70/116 (60.34%), Postives = 76/116 (65.52%), Query Frame = 0 

Query: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNIKGNGGSLSVVASVV 60
           MGC L S+SRFFSCPI EVDGSLRN RSSFYG D ++DKSPLRRNIKG+GG  SVVASV+
Sbjct: 1   MGCTLFSASRFFSCPIKEVDGSLRNSRSSFYGGDILYDKSPLRRNIKGSGGGFSVVASVI 60

Query: 61  FFLTLLHLLSMSIVAFSLRRKKKANFWVSQLGRRVKGSRETVIPDPDYRIPIVLLG 117
                                          GRRVKG RETVIPDPDYRIP+VLLG
Sbjct: 61  -------------------------------GRRVKG-RETVIPDPDYRIPVVLLG 84

[Close]
BLAST of Carg17504 vs. ExPASy TrEMBL
Match: A0A0A0LIY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006230 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.8e-20
Identity = 65/116 (56.03%), Postives = 72/116 (62.07%), Query Frame = 0 

Query: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNIKGNGGSLSVVASVV 60
           MGC L SS R FS PI EVDGSLRNLRSS++GA  V++KS LRRN+K + GS SVVASV 
Sbjct: 1   MGCTLFSSPRVFSSPIKEVDGSLRNLRSSYFGAHIVYNKSLLRRNMKCSSGSFSVVASV- 60

Query: 61  FFLTLLHLLSMSIVAFSLRRKKKANFWVSQLGRRVKGSRETVIPDPDYRIPIVLLG 117
                                         LG+RVKG RETVIPDPDYRIPIVLLG
Sbjct: 61  ------------------------------LGKRVKG-RETVIPDPDYRIPIVLLG 84

[Close]
BLAST of Carg17504 vs. ExPASy TrEMBL
Match: A0A1S3C602 (uncharacterized protein LOC103497257 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497257 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.8e-19
Identity = 62/116 (53.45%), Postives = 70/116 (60.34%), Query Frame = 0 

Query: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNIKGNGGSLSVVASVV 60
           MGC L SS RF S PI EVDGSLRNLRSSF+GA  +++KS LRRN+K   GS S+VAS+ 
Sbjct: 1   MGCTLFSSPRFLSSPIKEVDGSLRNLRSSFFGAHIMYNKSLLRRNMKCCSGSFSLVASL- 60

Query: 61  FFLTLLHLLSMSIVAFSLRRKKKANFWVSQLGRRVKGSRETVIPDPDYRIPIVLLG 117
                                          G+RVKG RETVIPDPDYRIPIVLLG
Sbjct: 61  ------------------------------FGKRVKG-RETVIPDPDYRIPIVLLG 84

The following BLAST results are available for this feature:
BLAST of Carg17504 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021246.13.4e-58100.00hypothetical protein SDJN02_17934 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022938227.17.7e-3472.41uncharacterized protein LOC111444372 [Cucurbita moschata][more]
KAG6586394.17.7e-3472.41hypothetical protein SDJN03_19127, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023538214.11.7e-3371.55uncharacterized protein LOC111799055 [Cucurbita pepo subsp. pepo][more]
XP_022965932.15.5e-3268.97uncharacterized protein LOC111465663 [Cucurbita maxima][more]
BLAST of Carg17504 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17504 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FDH23.7e-3472.41uncharacterized protein LOC111444372 OS=Cucurbita moschata OX=3662 GN=LOC1114443... [more]
A0A6J1HLM92.7e-3268.97uncharacterized protein LOC111465663 OS=Cucurbita maxima OX=3661 GN=LOC111465663... [more]
A0A6J1CN082.9e-2660.34uncharacterized protein LOC111012982 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A0A0LIY31.8e-2056.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006230 PE=4 SV=1[more]
A0A1S3C6025.8e-1953.45uncharacterized protein LOC103497257 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Carg17504 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17504-RACarg17504-RAmRNA