Carg16911 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16911
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr19: 820590 .. 821636 (-)
RNA-Seq ExpressionCarg16911
SyntenyCarg16911
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCTTCGTCCAAGGTAGGGGCTAAAAGGGAAATTGATAATTCGATATTTTACAGAAAAAAAAAAGAAGCAAAACCTCAACGTCGTCGTTTAAGCCGTATTTTGTTCTTACTCTTTTCTCAAGGCCTGCCTCCTTCAAACTACCTTCGGTTCCTTCCCGACTACAAGTCATTTCCATTTCTTTCCCGGCAATCTCACTGAGCAGTTCTTCAATCTCTGCAATACATTCTCAACTGGTTAGCAATCGTTCTTTAATTTTGTATTCTTCTTTGTTTCTTCATATTGGTAGGCCTGGCATTTTGATTCGTTTTTGTTCTGTAAACTCATGGAACAGTTTCGTTCTTCGTCCTATTCTGCACGTAATTGTTCTAATCTCGGATGTTTCCAATTTTCGTGTACTTATACTTTAAGAATCTTGGCTGGAGCCTCCCAGGCTTACTGTCTTCTGCGATTCAAGAACTATTTTGTAGGTTTTGGATAATTATAAGCTTGTTGAGTTTCTGGAATAATTCGTGCTAGAAATTAATAGTTTGTGTTGTGTGAATCTTCGAGTGAATATTATAGGCTAGCTGTATTTCGGTGAATGGTTTGAGATTTTATTTTTGGCGTCTGATCAATCGATTATGGGACGGAAGTTTCAAGTATATGGCCGTCACGAGAAGTGAATTTATCAGTGTTCAAGGTTTTGGTGTATTTGGCTATAATAGTCAATCACGGGAGGAGTTTAGAGTTTTTAAATCTTAGTTGTTACTTTGTTGGTCAAGAATGGATAGTCTTTATCCAAATTTTTTAATAATAATTTCTCGATCTTTATTGTACTTTACTGCTGGGACAACGTTGAACCTGCATCTCTATCTCTCTCTTGTTACCTAATTCTTTTGGCACTGACTTGAAATTCTTCTTATGCGTACATCTTTGTTGAATTCCAGGATTTTGTACTTGCAAAAAAATAGGTTCCTTCTATCTGGAAACAACAGTACCACGGCTGGTGAAATATTGGTCTTTTCGAGAGCATTGAAGGGGAAGGTCATTAAAATGACATAA

mRNA sequence

ATGTCGTCTTCGTCCAAGGCCTGCCTCCTTCAAACTACCTTCGGTTCCTTCCCGACTACAAGTCATTTCCATTTCTTTCCCGGCAATCTCACTGAGCAGATTTTGTACTTGCAAAAAAATAGGTTCCTTCTATCTGGAAACAACAGTACCACGGCTGGTGAAATATTGGTCTTTTCGAGAGCATTGAAGGGGAAGGTCATTAAAATGACATAA

Coding sequence (CDS)

ATGTCGTCTTCGTCCAAGGCCTGCCTCCTTCAAACTACCTTCGGTTCCTTCCCGACTACAAGTCATTTCCATTTCTTTCCCGGCAATCTCACTGAGCAGATTTTGTACTTGCAAAAAAATAGGTTCCTTCTATCTGGAAACAACAGTACCACGGCTGGTGAAATATTGGTCTTTTCGAGAGCATTGAAGGGGAAGGTCATTAAAATGACATAA

Protein sequence

MSSSSKACLLQTTFGSFPTTSHFHFFPGNLTEQILYLQKNRFLLSGNNSTTAGEILVFSRALKGKVIKMT
Homology
[Close]
BLAST of Carg16911 vs. NCBI nr
Match: KAG7011301.1 (hypothetical protein SDJN02_26205, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.8 bits (351), Expect = 8.9e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MSSSSKACLLQTTFGSFPTTSHFHFFPGNLTEQILYLQKNRFLLSGNNSTTAGEILVFSR 60
          MSSSSKACLLQTTFGSFPTTSHFHFFPGNLTEQILYLQKNRFLLSGNNSTTAGEILVFSR
Sbjct: 1  MSSSSKACLLQTTFGSFPTTSHFHFFPGNLTEQILYLQKNRFLLSGNNSTTAGEILVFSR 60

Query: 61 ALKGKVIKMT 71
          ALKGKVIKMT
Sbjct: 61 ALKGKVIKMT 70

[Close]
BLAST of Carg16911 vs. NCBI nr
Match: KAG6571555.1 (WD repeat-containing protein WDS-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.0 bits (175), Expect = 2.3e-09
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 1  MSSSSKACLLQTTFGSFPTTSHFHFFPGNLTEQILYL 38
          MSSSSKACLLQTTFGSFPTTSHFHFFPGNLTEQ   L
Sbjct: 1  MSSSSKACLLQTTFGSFPTTSHFHFFPGNLTEQFFNL 37

The following BLAST results are available for this feature:
BLAST of Carg16911 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011301.18.9e-30100.00hypothetical protein SDJN02_26205, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6571555.12.3e-0991.89WD repeat-containing protein WDS-like protein, partial [Cucurbita argyrosperma s... [more]
BLAST of Carg16911 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16911 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16911 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16911-RACarg16911-RAmRNA