Carg16858 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16858
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Signal recognition particle 9 kDa protein
Location	Carg_Chr19: 331654 .. 333709 (+)
RNA-Seq Expression	Carg16858
Synteny	Carg16858

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAATTTCCCGGGGGCTACCTCTCCTTCGCTTCTGCCGCCGAGCCATGGTCTACATAGCTTCCTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGCTCCGATCCTAATTCCGTAAGTTTTTACTTCGAAATCCGATTCTGTAGATGTTGCTGCTGAGAAATCAACATCACAGATGAGAAATTAGATCGCATGATTGTATTGTGATTCTACAATTGCTTTTTTAACTCTTGAATTACATGAAATCGAGCTAGTCATCGCTGCAGACTTGAATGATTTGAATTGAGCGTAATGAATTGTGAAGAGATTTCTAATTCATCTATTGCGAACTTACCGTCTACTCATATGTTCCGTTTATTGCATCGTTTCTCGTTTTTTCGATTCCTTCTAACTGCGACCACTGTTCTCTTTTTCAATCCTACTGGAAATTTAGACGCGGTACAACGTAAAGTATCGACACTGCGATGGGAAACTGGTTCTTAAGGTCACCGATAACCGTGAGGTAAGGAATTGTTTGTTGAGATATTGATGAACATCATGTGTTTTTCTGGTTAGTGATCGGGGTGGGAATTTCGATTATTAAACGGCAATGTTTGGAGAAGCGTGTTGAGTCTCTGATACACTTGTATCCAAGCAGACTTCTGATCAAGTTTTCGTTCAGTCTATGGCTCTCCACTTTATTCTTCTGTAAAGTGTCAAGTAGACAAGAGTTGAATCCAATACCGCAAACCAACAACTAGCAATTTAGAAATCAGGTCTTAAACCTAACCATTAATCCAAACCAAATCATTCATCGATTCATTTTGTTTCTTATTGTCAGATGCCGCATCGGTTGGAGAGAGGAATGAAACATTCTTTATAAGAGTGTGAAAACTTCTCCCTAGTAGACGCGCTTTAAAAACCTTGAGGGGATGCCCGAAAGGGAAAACCCAAAGAGGATAATATCTACTAGCAGTGGGCTTGGATTTGTACTGTTATGCTTATATTGGCTGAAGTTATCTTTCATAATCATTCTACGGAAGATTAGAATGTGGGAGTGTTTGTTACCATGCTAGAAATGGTTTTCTTTTCCTTCTCACGTGGAAAAAATGAAAGCTAATTATGCAAGATGCATGGGTGCAAGTTATCAACTAAGAATCTCATTGGTGAAGTTCATACTTTGATGCTTGCTTGTATGGGGAATTTTCTGTATATATGCCTGTACCCTTGTGACAAACTGGACAAGTCAAATGATCTTCTATTGAAATGAACACTCTGGAAGTAACCAATTGGCATAACGGCACATGTCGAATCATGAAAATTTCAATATCGAGATGTTTTAGGTCTACTAATTTCCTCTTTTTTTTCCTTTTGTCTTCTCCCTGTTTTCCAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCCAAGAAGATGGAAAAACTCAACAACATATTCTTCACTCTGATGGCCCGGGGCCCCGATGGTATTTTGCCTTTTAATTTATGTTGATTAATGAAGCATCAGAATACCCTGTTGAATAATAAATAACCGCTTGCTAGTGACATGATTTAGGACTAAAATTTTGTTAAGATTTGAATTCTTGTTGTCTATATAGTTTGAATGGAAACTATATATTCTTTAGTTGCATGAAAGTTTCAAATCCTCAAATTGCGGAAACTTGTAAATTAGCTCCATTGATGATTTCAGTACTTGAGGATGAGTTCACTACTCCTCTGAATGCCGTTTGAGCCCATGATTGAGTGTAGACCTGCTTGCTAACTAATTTATATTGGCCAAAATGGTTCACGGCGAGACTGGAGTTTTCACACAATCTATGATCTATATGCAATCTTCGCATTGATAGACCATCTTTCTTAGTCTATATAATTTTCTTTTTATTTATCCATCAATGCTTCAACCTGTAAGTCTAATGTGCACTCAATTCTACTTTTTGGAATTCTCATATATTTTTTACTTTTCTCTTTTTTTCAGTGGATATATCAGAAGTGACGGGCAAGGACCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAATGA

mRNA sequence

CCAAATTTCCCGGGGGCTACCTCTCCTTCGCTTCTGCCGCCGAGCCATGGTCTACATAGCTTCCTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGCTCCGATCCTAATTCCACGCGGTACAACGTAAAGTATCGACACTGCGATGGGAAACTGGTTCTTAAGGTCACCGATAACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCCAAGAAGATGGAAAAACTCAACAACATATTCTTCACTCTGATGGCCCGGGGCCCCGATGTGGATATATCAGAAGTGACGGGCAAGGACCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAATGA

Coding sequence (CDS)

ATGGTCTACATAGCTTCCTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGCTCCGATCCTAATTCCACGCGGTACAACGTAAAGTATCGACACTGCGATGGGAAACTGGTTCTTAAGGTCACCGATAACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCCAAGAAGATGGAAAAACTCAACAACATATTCTTCACTCTGATGGCCCGGGGCCCCGATGTGGATATATCAGAAGTGACGGGCAAGGACCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAATGA

Protein sequence

MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ

Homology

[Close]

BLAST of Carg16858 vs. NCBI nr
Match: XP_022963515.1 (signal recognition particle 9 kDa protein [Cucurbita moschata] >XP_022963516.1 signal recognition particle 9 kDa protein [Cucurbita moschata] >KAG7011249.1 Signal recognition particle 9 kDa protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212.2 bits (539), Expect = 2.1e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]

BLAST of Carg16858 vs. NCBI nr
Match: XP_038887366.1 (signal recognition particle 9 kDa protein [Benincasa hispida] >XP_038887367.1 signal recognition particle 9 kDa protein [Benincasa hispida])

HSP 1 Score: 210.7 bits (535), Expect = 6.0e-51
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVY+ASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYVASWDEFVERSVQLFRSDPNSTRYNMKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]

BLAST of Carg16858 vs. NCBI nr
Match: KAG6571487.1 (Signal recognition particle 9 kDa protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210.7 bits (535), Expect = 6.0e-51
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGP+VDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPEVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]

BLAST of Carg16858 vs. NCBI nr
Match: XP_022967500.1 (signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967501.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967502.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967503.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 7.9e-51
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKL+NIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLDNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]

BLAST of Carg16858 vs. NCBI nr
Match: XP_004154105.1 (signal recognition particle 9 kDa protein [Cucumis sativus] >XP_004154106.1 signal recognition particle 9 kDa protein [Cucumis sativus] >XP_008449345.1 PREDICTED: signal recognition particle 9 kDa protein [Cucumis melo] >XP_008449346.1 PREDICTED: signal recognition particle 9 kDa protein [Cucumis melo] >XP_031736389.1 signal recognition particle 9 kDa protein [Cucumis sativus] >KAA0057425.1 signal recognition particle 9 kDa protein [Cucumis melo var. makuwa] >KGN61688.1 hypothetical protein Csa_006515 [Cucumis sativus] >TYK30124.1 signal recognition particle 9 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 1.3e-50
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDP STRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]

BLAST of Carg16858 vs. ExPASy Swiss-Prot
Match: Q9SMU7 (Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP9 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.8e-48
Identity = 90/103 (87.38%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVD+SEVTGK+Q++ QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

[Close]

BLAST of Carg16858 vs. ExPASy Swiss-Prot
Match: O04438 (Signal recognition particle 9 kDa protein OS=Zea mays OX=4577 GN=SRP9 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-44
Identity = 84/103 (81.55%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVY+ SW+EFVERSVQLFR DPN+TRY +KYRHC+GKLVLKVTD+RECLKFKTDQAQDAK
Sbjct: 1   MVYVDSWEEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFF LM RGPDVDISEV+GK+Q + Q  KKGRGR+Q
Sbjct: 61  KMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAKKGRGRRQ 103

[Close]

BLAST of Carg16858 vs. ExPASy Swiss-Prot
Match: Q55GL2 (Signal recognition particle 9 kDa protein OS=Dictyostelium discoideum OX=44689 GN=srp9 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-16
Identity = 35/71 (49.30%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 2  VYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKK 61
          +YI  WDEF ++S QL+R+DP  TR++ K+RH +GK+VLKVT++   LKF+TD+  D K+
Sbjct: 1  MYIEDWDEFYDKSEQLYRTDPKRTRFSFKFRHVEGKVVLKVTNDTVNLKFQTDKENDFKR 60

Query: 62 MEKLNNIFFTL 73
          ++++N++FF L
Sbjct: 61 IDQINSLFFRL 71

[Close]

BLAST of Carg16858 vs. ExPASy Swiss-Prot
Match: P21262 (Signal recognition particle 9 kDa protein OS=Canis lupus familiaris OX=9615 GN=SRP9 PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-12
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 1  MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
          M    +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL ++TDQAQD K
Sbjct: 1  MAQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGSLCIKVTDDLVCLVYRTDQAQDVK 60

Query: 61 KMEKLNNIFFTLM 74
          K+EK ++    LM
Sbjct: 61 KIEKFHSQLMRLM 73

[Close]

BLAST of Carg16858 vs. ExPASy Swiss-Prot
Match: P49458 (Signal recognition particle 9 kDa protein OS=Homo sapiens OX=9606 GN=SRP9 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-12
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 6  SWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKL 65
          +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL +KTDQAQD KK+EK 
Sbjct: 6  TWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKF 65

Query: 66 NNIFFTLM 74
          ++    LM
Sbjct: 66 HSQLMRLM 73

[Close]

BLAST of Carg16858 vs. ExPASy TrEMBL
Match: A0A6J1HI87 (Signal recognition particle 9 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111463821 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.0e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]

BLAST of Carg16858 vs. ExPASy TrEMBL
Match: A0A6J1HSA1 (Signal recognition particle 9 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111466989 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 3.8e-51
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKL+NIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLDNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]

BLAST of Carg16858 vs. ExPASy TrEMBL
Match: A0A1S3BLU0 (Signal recognition particle 9 kDa protein OS=Cucumis melo OX=3656 GN=LOC103491251 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.5e-51
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDP STRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]

BLAST of Carg16858 vs. ExPASy TrEMBL
Match: A0A5D3E2L2 (Signal recognition particle 9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001060 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.5e-51
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDP STRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]

BLAST of Carg16858 vs. ExPASy TrEMBL
Match: A0A0A0LIQ2 (Signal recognition particle 9 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G224280 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.5e-51
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDP STRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]

BLAST of Carg16858 vs. TAIR 10
Match: AT3G49100.1 (Signal recognition particle, SRP9/SRP14 subunit )

HSP 1 Score: 191.8 bits (486), Expect = 2.7e-49
Identity = 90/103 (87.38%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVD+SEVTGK+Q++ QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

The following BLAST results are available for this feature:

BLAST of Carg16858 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963515.1	2.1e-51	100.00	signal recognition particle 9 kDa protein [Cucurbita moschata] >XP_022963516.1 s...	[more]
XP_038887366.1	6.0e-51	98.06	signal recognition particle 9 kDa protein [Benincasa hispida] >XP_038887367.1 si...	[more]
KAG6571487.1	6.0e-51	99.03	Signal recognition particle 9 kDa protein, partial [Cucurbita argyrosperma subsp...	[more]
XP_022967500.1	7.9e-51	99.03	signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967501....	[more]
XP_004154105.1	1.3e-50	98.06	signal recognition particle 9 kDa protein [Cucumis sativus] >XP_004154106.1 sign...	[more]

BLAST of Carg16858 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMU7	3.8e-48	87.38	Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP...	[more]
O04438	2.0e-44	81.55	Signal recognition particle 9 kDa protein OS=Zea mays OX=4577 GN=SRP9 PE=3 SV=1	[more]
Q55GL2	5.0e-16	49.30	Signal recognition particle 9 kDa protein OS=Dictyostelium discoideum OX=44689 G...	[more]
P21262	2.0e-12	45.21	Signal recognition particle 9 kDa protein OS=Canis lupus familiaris OX=9615 GN=S...	[more]
P49458	2.6e-12	48.53	Signal recognition particle 9 kDa protein OS=Homo sapiens OX=9606 GN=SRP9 PE=1 S...	[more]

BLAST of Carg16858 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HI87	1.0e-51	100.00	Signal recognition particle 9 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1HSA1	3.8e-51	99.03	Signal recognition particle 9 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A1S3BLU0	6.5e-51	98.06	Signal recognition particle 9 kDa protein OS=Cucumis melo OX=3656 GN=LOC10349125...	[more]
A0A5D3E2L2	6.5e-51	98.06	Signal recognition particle 9 kDa protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0LIQ2	6.5e-51	98.06	Signal recognition particle 9 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G22...	[more]

BLAST of Carg16858 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49100.1	2.7e-49	87.38	Signal recognition particle, SRP9/SRP14 subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039432	SRP9 domain	PFAM	PF05486	SRP9-21	coord: 5..66 e-value: 2.4E-10 score: 40.7
IPR008832	Signal recognition particle, SRP9 subunit	PIRSF	PIRSF017029	SRP9	coord: 1..97 e-value: 6.2E-39 score: 129.8
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	GENE3D	3.30.720.10	Signal recognition particle alu RNA binding heterodimer, srp9/1	coord: 2..82 e-value: 3.6E-35 score: 121.6
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	SUPERFAMILY	54762	Signal recognition particle alu RNA binding heterodimer, SRP9/14	coord: 5..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..97
None	No IPR available	PANTHER	PTHR12834:SF13	SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN	coord: 1..103
IPR039914	Signal recognition particle SRP9	PANTHER	PTHR12834	SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16858-RA	Carg16858-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045900	negative regulation of translational elongation
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
cellular_component	GO:0048500	signal recognition particle
molecular_function	GO:0008312	7S RNA binding