Carg16415 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16415
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	S-adenosylmethionine decarboxylase proenzyme-like
Location	Carg_Chr12: 7217127 .. 7217449 (+)
RNA-Seq Expression	Carg16415
Synteny	Carg16415

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAAGCGTTAATGTTGTGATGGAGGCGAAACGCGGTACGAAGAAGTCTCGCAGTGGTAGTAGCAATAGTAGTAAAAGGCAACAATACGAAGCTCCTCTTGGTTACATTATTGAAGACGTTCGTCCACACGGTGGTATTGAGAAGTTCCGATCTGCTGCGTATTCCAACGTAAGATTGTTCTTCGATTTCTTCGATTTCTTCGAGTTCTTGAGTAGTTTTGTGATTTCTTGCGTTGTAATTGTGTTTTTCTTGTTGATTTTCTGGCAGTGCGTGAGGAAACCATCCTGATACCTTTTGTCTCTGTAGATTACGAGTTCTGA

mRNA sequence

AGAAGAAGCGTTAATGTTGTGATGGAGGCGAAACGCGGTACGAAGAAGTCTCGCAGTGGTAGTAGCAATAGTAGTAAAAGGCAACAATACGAAGCTCCTCTTGGTTACATTATTGAAGACGTTCGTCCACACGGTGGTATTGAGAAGTTCCGATCTGCTGCGTATTCCAACGTAAGATTGTTCTTCGATTTCTTCGATTTCTTCGAGTTCTTGATGCGTGAGGAAACCATCCTGATACCTTTTGTCTCTGTAGATTACGAGTTCTGA

Coding sequence (CDS)

AGAAGAAGCGTTAATGTTGTGATGGAGGCGAAACGCGGTACGAAGAAGTCTCGCAGTGGTAGTAGCAATAGTAGTAAAAGGCAACAATACGAAGCTCCTCTTGGTTACATTATTGAAGACGTTCGTCCACACGGTGGTATTGAGAAGTTCCGATCTGCTGCGTATTCCAACGTAAGATTGTTCTTCGATTTCTTCGATTTCTTCGAGTTCTTGATGCGTGAGGAAACCATCCTGATACCTTTTGTCTCTGTAGATTACGAGTTCTGA

Protein sequence

RRSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNVRLFFDFFDFFEFLMREETILIPFVSVDYEF

Homology

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BLAST of Carg16415 vs. NCBI nr
Match: KAG7020811.1 (hypothetical protein SDJN02_17499, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.8 bits (434), Expect = 2.7e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  RRSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNVRL 60
          RRSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNVRL
Sbjct: 1  RRSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNVRL 60

Query: 61 FFDFFDFFEFLMREETILIPFVSVDYEF 89
          FFDFFDFFEFLMREETILIPFVSVDYEF
Sbjct: 61 FFDFFDFFEFLMREETILIPFVSVDYEF 88

[Close]

BLAST of Carg16415 vs. NCBI nr
Match: KAG6586035.1 (hypothetical protein SDJN03_18768, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  RRSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 58
          RRSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN
Sbjct: 10 RRSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 66

[Close]

BLAST of Carg16415 vs. NCBI nr
Match: XP_023536821.1 (S-adenosylmethionine decarboxylase proenzyme-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-17
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 8  MEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 58
          MEAKRGTKKS SGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN
Sbjct: 1  MEAKRGTKKSSSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 50

[Close]

BLAST of Carg16415 vs. NCBI nr
Match: TYJ96391.1 (S-adenosylmethionine decarboxylase proenzyme-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 3.7e-17
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1  RRSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 58
          RRSV+VVME K G KKS S SS SSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN
Sbjct: 13 RRSVDVVMETKGGKKKSNSSSSKSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 69

[Close]

BLAST of Carg16415 vs. NCBI nr
Match: XP_038890197.1 (S-adenosylmethionine decarboxylase proenzyme-like [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-16
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   RRSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 58
           RRSV+VVM+ + G KKS S SS SSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN
Sbjct: 109 RRSVDVVMKTEGGKKKSSSSSSKSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 165

[Close]

BLAST of Carg16415 vs. ExPASy TrEMBL
Match: A0A5D3BCP3 (S-adenosylmethionine decarboxylase proenzyme-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00170 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1  RRSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 58
          RRSV+VVME K G KKS S SS SSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN
Sbjct: 13 RRSVDVVMETKGGKKKSNSSSSKSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 69

[Close]

BLAST of Carg16415 vs. ExPASy TrEMBL
Match: A0A1S3BUN9 (Adenosylmethionine decarboxylase OS=Cucumis melo OX=3656 GN=LOC103493485 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.9e-14
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 8  MEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 58
          ME K G KKS S SS SSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN
Sbjct: 1  METKGGKKKSNSSSSKSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 50

[Close]

BLAST of Carg16415 vs. ExPASy TrEMBL
Match: A0A438HV63 (Adenosylmethionine decarboxylase OS=Vitis vinifera OX=29760 GN=SAMDC_3 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.1e-13
Identity = 52/79 (65.82%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 3   SVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNVRLFF 62
           SV+VVME K G KKS S SS      QYE PLGYIIEDVRP+GGIEKFRSAAYSNVR F 
Sbjct: 36  SVDVVMETKGGKKKSSSSSS-----LQYEVPLGYIIEDVRPNGGIEKFRSAAYSNVRSFS 95

Query: 63  DFFDFFEFLMREETILIPF 82
               F    +REE ILI F
Sbjct: 96  PHVSF----VREEAILIRF 105

[Close]

BLAST of Carg16415 vs. ExPASy TrEMBL
Match: A0A0A0LM83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036690 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.5e-13
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 8  MEAKRGTKKSRSGSSN-SSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 58
          ME K G KKS S SS+ SSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN
Sbjct: 1  METKGGKKKSNSSSSSKSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 51

[Close]

BLAST of Carg16415 vs. ExPASy TrEMBL
Match: A0A6N2M2H1 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS307419 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 42/56 (75.00%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 2  RSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 58
          R VNVVME K G KKS S SSNS    QYE PLGY IED+RP+GGIEKFRSAAYSN
Sbjct: 41 RGVNVVMETKGGKKKSSSSSSNS---VQYEVPLGYSIEDIRPNGGIEKFRSAAYSN 93

[Close]

BLAST of Carg16415 vs. TAIR 10
Match: AT3G25572.1 (conserved peptide upstream open reading frame 11 )

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-10
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 8  MEAKRGTKKSRSGSSNSSKRQQ--YEAPLGYIIEDVRPHGGIEKFRSAAYSNV 59
          ME K G KK    SSNSS R    +EAPL Y IEDVRP+GGI+KFRSAAYSN+
Sbjct: 1  METKGGKKK----SSNSSSRDSLFFEAPLRYSIEDVRPNGGIKKFRSAAYSNI 49

[Close]

BLAST of Carg16415 vs. TAIR 10
Match: AT3G02468.1 (conserved peptide upstream open reading frame 9 )

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-10
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 7  VMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 58
          +ME+K G KKS S SS       YEAPLGY IEDVRP+GGI+KF+S+ YSN
Sbjct: 1  MMESKGGKKKSSSSSS-----LFYEAPLGYSIEDVRPNGGIKKFKSSVYSN 46

[Close]

BLAST of Carg16415 vs. TAIR 10
Match: AT5G15948.1 (conserved peptide upstream open reading frame 10 )

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-09
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 8  MEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 58
          ME+K G KKS S SS       YEAPLGY IEDVRP GGI+KF+S+ YSN
Sbjct: 1  MESKAGNKKSSSNSSLC-----YEAPLGYSIEDVRPFGGIKKFKSSVYSN 45

The following BLAST results are available for this feature:

BLAST of Carg16415 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020811.1	2.7e-39	100.00	hypothetical protein SDJN02_17499, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6586035.1	1.1e-21	100.00	hypothetical protein SDJN03_18768, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023536821.1	2.2e-17	98.00	S-adenosylmethionine decarboxylase proenzyme-like [Cucurbita pepo subsp. pepo]	[more]
TYJ96391.1	3.7e-17	87.72	S-adenosylmethionine decarboxylase proenzyme-like [Cucumis melo var. makuwa]	[more]
XP_038890197.1	4.1e-16	84.21	S-adenosylmethionine decarboxylase proenzyme-like [Benincasa hispida]	[more]

BLAST of Carg16415 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg16415 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCP3	1.8e-17	87.72	S-adenosylmethionine decarboxylase proenzyme-like OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3BUN9	1.9e-14	88.00	Adenosylmethionine decarboxylase OS=Cucumis melo OX=3656 GN=LOC103493485 PE=3 SV...	[more]
A0A438HV63	2.1e-13	65.82	Adenosylmethionine decarboxylase OS=Vitis vinifera OX=29760 GN=SAMDC_3 PE=3 SV=1	[more]
A0A0A0LM83	3.5e-13	86.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036690 PE=4 SV=1	[more]
A0A6N2M2H1	1.1e-11	75.00	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS307419 PE=4 SV=...	[more]

BLAST of Carg16415 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25572.1	3.6e-10	66.04	conserved peptide upstream open reading frame 11	[more]
AT3G02468.1	8.0e-10	62.75	conserved peptide upstream open reading frame 9	[more]
AT5G15948.1	1.0e-09	64.00	conserved peptide upstream open reading frame 10	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012511	S-adenosyl-l-methionine decarboxylase leader peptide	PFAM	PF08132	AdoMetDC_leader	coord: 8..57 e-value: 7.7E-22 score: 77.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR35727	BNAA05G33520D PROTEIN	coord: 8..57
None	No IPR available	PANTHER	PTHR35727:SF2	SUBFAMILY NOT NAMED	coord: 8..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16415-RA	Carg16415-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006557	S-adenosylmethioninamine biosynthetic process
biological_process	GO:0008295	spermidine biosynthetic process
biological_process	GO:0006597	spermine biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004014	adenosylmethionine decarboxylase activity