Carg16348 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16348
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	classical arabinogalactan protein 9-like
Location	Carg_Chr19: 6066349 .. 6067628 (-)
RNA-Seq Expression	Carg16348
Synteny	Carg16348

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCCAAGCCACAATTATGGATCCTCAAGCATTGTTTTGCCTCACTTTGATCTCTATTGCCTTCGCCGTTGCCGGAGCTCAGCCCCCCTCCAGTCCCCCCACCGCCACCCCCGTCCCTCCCACCACCACCACCACCCCTCCTCCGCCACTCCTCCTCCAGTATCAGCTCCCCCACCTGCCACTCCACCACCAGCCACTCCCCCTCCGGCTTCCCCACCTCCAGCCACTCCTCCTCCGGCATCCCCACCACCGGCCACCCCTCCTCCAGCTTCCCCACCTCCAGCCACTCCTCCTCCGGCATCCCCACCACCGGCCACTCCTCCTCCAGCTTCCCCACCACCGGCCACTCCTCCTCCAGCTTCCCCACCACCGGCAACTCCACCACCTGCAACCCCACCACCAGCCACTCCACCTCCTGCACCACTGGCATCACCACCAGCGGCGGTTCCGGCTCCTGCACCCAGTAAGAAGAAGTTGAAGGCGGCTCCAGGTCCGGCCCCAGTTTCGAGCCCGCCGATGCCGTCGGCGGAGGGTCCAGGACCCGCCGGCCCAGAATCTCCTACCCCATCTCAGAACGACAATGTAAGCTTCATTATATACTTCGATTCATCATACATTAATCTTCTACTAAATAATTTTTAATGTCATTAAACTAATAATTCTACATTTTCAAATAATTTTTTTTAGATTCATTAAAAAATTTAACTCATTTTTTACATTTTTTTTTTATTTTAAAATTATTATCCACAAAATCAAGAGTTCATAGATCCTAGACTCGGTGTAAATTAAAATTTTACGGTCATATTTAATAGAAATTATATAATACACACAAAATTAAAAGTTTAGAAATATTTTAAACACCCTTTAAAGCTCATAAACTTTTATGACACGAACACGAACAAAAATTTCTAGATCTTCTTGCATTTCATGTTACGTTATTTTTGTTAATCATTATCATCGAACGCTAACACGACATGTCAGATTGACGGACAATATTATTATTATTATTATTATTATTATTATTATTTGCAGAGTGGAGTGGAGAAAAGTTGGAGAAAGGAGACAATGGTGGGGAGCATGTTGATTGGAATGGGATATGTATTGATGATGGCTTAGATTTCTTCCTTTTCTATGCTGTCTATGTTGGGTTTTCCATTATTCTTCATTTTGCCTGTTCCTTATTTCATTTCATTTTGATTATTATTATTATTATTATTAGCCCATTTCTTGTTTGGGACTTTTGATCTCCATATATATAAATACCCATTTGCTTCCGTTCC

mRNA sequence

AAGCCAAGCCACAATTATGGATCCTCAAGCATTGTTTTGCCTCACTTTGATCTCTATTGCCTTCGCCGTTGCCGGAGCTCAGCCCCCCTCCAGTCCCCCCACCGCCACCCCCGTCCCTCCCACCACCACCACCACCCCTCCTCCGCCACTCCTCCTCCAGTATCAGCTCCCCCACCTGCCACTCCACCACCAGCCACTCCCCCTCCGGCTTCCCCACCTCCAGCCACTCCTCCTCCGGCATCCCCACCACCGGCCACCCCTCCTCCAGCTTCCCCACCTCCAGCCACTCCTCCTCCGGCATCCCCACCACCGGCCACTCCTCCTCCAGCTTCCCCACCACCGGCCACTCCTCCTCCAGCTTCCCCACCACCGGCAACTCCACCACCTGCAACCCCACCACCAGCCACTCCACCTCCTGCACCACTGGCATCACCACCAGCGGCGGTTCCGGCTCCTGCACCCAGTAAGAAGAAGTTGAAGGCGGCTCCAGGTCCGGCCCCAGTTTCGAGCCCGCCGATGCCGTCGGCGGAGGGTCCAGGACCCGCCGGCCCAGAATCTCCTACCCCATCTCAGAACGACAATAGTGGAGTGGAGAAAAGTTGGAGAAAGGAGACAATGGTGGGGAGCATGTTGATTGGAATGGGATATGTATTGATGATGGCTTAGATTTCTTCCTTTTCTATGCTGTCTATGTTGGGTTTTCCATTATTCTTCATTTTGCCTGTTCCTTATTTCATTTCATTTTGATTATTATTATTATTATTATTAGCCCATTTCTTGTTTGGGACTTTTGATCTCCATATATATAAATACCCATTTGCTTCCGTTCC

Coding sequence (CDS)

AAGCCAAGCCACAATTATGGATCCTCAAGCATTGTTTTGCCTCACTTTGATCTCTATTGCCTTCGCCGTTGCCGGAGCTCAGCCCCCCTCCAGTCCCCCCACCGCCACCCCCGTCCCTCCCACCACCACCACCACCCCTCCTCCGCCACTCCTCCTCCAGTATCAGCTCCCCCACCTGCCACTCCACCACCAGCCACTCCCCCTCCGGCTTCCCCACCTCCAGCCACTCCTCCTCCGGCATCCCCACCACCGGCCACCCCTCCTCCAGCTTCCCCACCTCCAGCCACTCCTCCTCCGGCATCCCCACCACCGGCCACTCCTCCTCCAGCTTCCCCACCACCGGCCACTCCTCCTCCAGCTTCCCCACCACCGGCAACTCCACCACCTGCAACCCCACCACCAGCCACTCCACCTCCTGCACCACTGGCATCACCACCAGCGGCGGTTCCGGCTCCTGCACCCAGTAAGAAGAAGTTGAAGGCGGCTCCAGGTCCGGCCCCAGTTTCGAGCCCGCCGATGCCGTCGGCGGAGGGTCCAGGACCCGCCGGCCCAGAATCTCCTACCCCATCTCAGAACGACAATAGTGGAGTGGAGAAAAGTTGGAGAAAGGAGACAATGGTGGGGAGCATGTTGATTGGAATGGGATATGTATTGATGATGGCTTAG

Protein sequence

KPSHNYGSSSIVLPHFDLYCLRRCRSSAPLQSPHRHPRPSHHHHHPSSATPPPVSAPPPATPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA

Homology

[Close]

BLAST of Carg16348 vs. NCBI nr
Match: KAG7011623.1 (hypothetical protein SDJN02_26529, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349.0 bits (894), Expect = 3.0e-92
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   KPSHNYGSSSIVLPHFDLYCLRRCRSSAPLQSPHRHPRPSHHHHHPSSATPPPVSAPPPA 60
           KPSHNYGSSSIVLPHFDLYCLRRCRSSAPLQSPHRHPRPSHHHHHPSSATPPPVSAPPPA
Sbjct: 1   KPSHNYGSSSIVLPHFDLYCLRRCRSSAPLQSPHRHPRPSHHHHHPSSATPPPVSAPPPA 60

Query: 61  TPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPA 120
           TPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPA
Sbjct: 61  TPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPA 120

Query: 121 SPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPG 180
           SPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPG
Sbjct: 121 SPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPG 180

Query: 181 PAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 222
           PAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA
Sbjct: 181 PAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 221

[Close]

BLAST of Carg16348 vs. NCBI nr
Match: KAG6571935.1 (hypothetical protein SDJN03_28663, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.4 bits (625), Expect = 4.7e-61
Identity = 178/193 (92.23%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 29  PLQSPHRHPRPSHHHHHPSSATPPPVSAPPPATPPPATPPPASPPPATPPPASPPPATPP 88
           P   P   P P      P  ATPPPVSAPPPATPPPATPPPASPPPATPPPASPPPATPP
Sbjct: 24  PSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPPATPPPASPPPATPPPASPPPATPP 83

Query: 89  PASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAA 148
           PASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAA
Sbjct: 84  PASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAA 143

Query: 149 VPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVG 208
           VPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVG
Sbjct: 144 VPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVG 203

Query: 209 SMLIGMGYVLMMA 222
           SMLIGMGYVLMMA
Sbjct: 204 SMLIGMGYVLMMA 216

[Close]

BLAST of Carg16348 vs. NCBI nr
Match: XP_022952421.1 (classical arabinogalactan protein 9-like [Cucurbita moschata])

HSP 1 Score: 230.3 bits (586), Expect = 1.6e-56
Identity = 168/176 (95.45%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 46  PSSATPPPVSAPPPATPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA 105
           P  ATPPPVSAPPPAT PPATPPPASPPPATPPPASPPPATPPPAS     PPPASPPPA
Sbjct: 40  PPPATPPPVSAPPPAT-PPATPPPASPPPATPPPASPPPATPPPAS-----PPPASPPPA 99

Query: 106 TPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGP 165
           TPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGP
Sbjct: 100 TPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGP 159

Query: 166 APVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 222
           APVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA
Sbjct: 160 APVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 209

[Close]

BLAST of Carg16348 vs. NCBI nr
Match: XP_023553858.1 (classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.9 bits (559), Expect = 2.1e-53
Identity = 159/175 (90.86%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 47  SSATPPPVSAPPPATPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPAT 106
           ++  PPP + PP ++PPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPAT
Sbjct: 37  TTTAPPPATPPPVSSPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPAT 96

Query: 107 PPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPA 166
           PPPASPPPATPPPAS     PPPATPPPATPPP PLASPPAAVPAPAPSKKKLKAAPGPA
Sbjct: 97  PPPASPPPATPPPAS-----PPPATPPPATPPPTPLASPPAAVPAPAPSKKKLKAAPGPA 156

Query: 167 PVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 222
           PVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA
Sbjct: 157 PVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 206

[Close]

BLAST of Carg16348 vs. NCBI nr
Match: XP_022972415.1 (classical arabinogalactan protein 9-like [Cucurbita maxima])

HSP 1 Score: 198.0 bits (502), Expect = 8.7e-47
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 85  ATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLAS 144
           ATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLAS
Sbjct: 87  ATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLAS 146

Query: 145 PPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKE 204
           PPAAVPAPAPSKKKLKAAPG APVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKE
Sbjct: 147 PPAAVPAPAPSKKKLKAAPGSAPVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKE 206

Query: 205 TMVGSMLIGMGYVLMMA 222
           T++GSMLIGMGYVLMMA
Sbjct: 207 TVLGSMLIGMGYVLMMA 223

[Close]

BLAST of Carg16348 vs. ExPASy Swiss-Prot
Match: Q9C5S0 (Classical arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=AGP9 PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 3.1e-07
Identity = 105/184 (57.07%), Postives = 120/184 (65.22%), Query Frame = 0


Query: 46  PSSATPPPVSAPPPATPPP-ATPPPASPPPATPPPASPPPAT--PPPASPPP--ATPPPA 105
           P +ATP P   P P TPPP ATPPP S PP  P   SPPP T  PPPA+PPP  ++PPPA
Sbjct: 26  PPTATPAP---PTPTTPPPAATPPPVSAPP--PVTTSPPPVTTAPPPANPPPPVSSPPPA 85

Query: 106 SPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLK 165
           SPPPATPPP + PP  PP ASPPPATPPP     ATPPPAPLASPPA VPAPAP+ K   
Sbjct: 86  SPPPATPPPVASPP--PPVASPPPATPPPV----ATPPPAPLASPPAQVPAPAPTTK--P 145

Query: 166 AAPGPAPVSSPPMPSAEGPGPAGPE-SPTPSQ---NDNSGVEKSWRKETMVGSMLIGMGY 221
            +P P+P SSPP+PS++ PGP+    SP PS    ND +G  K      MV S++ G   
Sbjct: 146 DSPSPSPSSSPPLPSSDAPGPSTDSISPAPSPTDVNDQNGASK------MVSSLVFGSVL 190

[Close]

BLAST of Carg16348 vs. ExPASy TrEMBL
Match: A0A6J1GK65 (classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111455113 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 7.6e-57
Identity = 168/176 (95.45%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 46  PSSATPPPVSAPPPATPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA 105
           P  ATPPPVSAPPPAT PPATPPPASPPPATPPPASPPPATPPPAS     PPPASPPPA
Sbjct: 40  PPPATPPPVSAPPPAT-PPATPPPASPPPATPPPASPPPATPPPAS-----PPPASPPPA 99

Query: 106 TPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGP 165
           TPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGP
Sbjct: 100 TPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGP 159

Query: 166 APVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 222
           APVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA
Sbjct: 160 APVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 209

[Close]

BLAST of Carg16348 vs. ExPASy TrEMBL
Match: A0A6J1I8J9 (classical arabinogalactan protein 9-like OS=Cucurbita maxima OX=3661 GN=LOC111470982 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 4.2e-47
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 85  ATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLAS 144
           ATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLAS
Sbjct: 87  ATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLAS 146

Query: 145 PPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKE 204
           PPAAVPAPAPSKKKLKAAPG APVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKE
Sbjct: 147 PPAAVPAPAPSKKKLKAAPGSAPVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKE 206

Query: 205 TMVGSMLIGMGYVLMMA 222
           T++GSMLIGMGYVLMMA
Sbjct: 207 TVLGSMLIGMGYVLMMA 223

[Close]

BLAST of Carg16348 vs. ExPASy TrEMBL
Match: A0A5A7SJX5 (Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001070 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.0e-37
Identity = 143/181 (79.01%), Postives = 159/181 (87.85%), Query Frame = 0


Query: 46  PSSAT--PPPVSAPPPA-TPPPATPPPASPPPATPPP-ASPPPATPPPASPPPATPPPAS 105
           P +AT  PP  SAPPPA TPPP + P   PP ATPPP A+PPPA+PPPASPPPA+PPPA+
Sbjct: 29  PPTATPSPPTTSAPPPASTPPPVSSP---PPAATPPPAATPPPASPPPASPPPASPPPAT 88

Query: 106 PPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLK- 165
           PPPA+PPPASPPPA+PPPASPPPA+PPPA+PPPA PPPAPLASPP AVPAPAPSKKK+K 
Sbjct: 89  PPPASPPPASPPPASPPPASPPPASPPPASPPPAIPPPAPLASPPTAVPAPAPSKKKVKA 148

Query: 166 AAPGPAPVSSPPMPSAEGPGPAGP-ESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLM 221
           AAPGPAPVSSPP PS E PGPAGP +SPTPSQNDNSGVEK WRKE+MVGS++IGMGYV +
Sbjct: 149 AAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFL 206

[Close]

BLAST of Carg16348 vs. ExPASy TrEMBL
Match: A0A1S3BZW9 (classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103495292 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.0e-37
Identity = 143/181 (79.01%), Postives = 159/181 (87.85%), Query Frame = 0


Query: 46  PSSAT--PPPVSAPPPA-TPPPATPPPASPPPATPPP-ASPPPATPPPASPPPATPPPAS 105
           P +AT  PP  SAPPPA TPPP + P   PP ATPPP A+PPPA+PPPASPPPA+PPPA+
Sbjct: 29  PPTATPSPPTTSAPPPASTPPPVSSP---PPAATPPPAATPPPASPPPASPPPASPPPAT 88

Query: 106 PPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLK- 165
           PPPA+PPPASPPPA+PPPASPPPA+PPPA+PPPA PPPAPLASPP AVPAPAPSKKK+K 
Sbjct: 89  PPPASPPPASPPPASPPPASPPPASPPPASPPPAIPPPAPLASPPTAVPAPAPSKKKVKA 148

Query: 166 AAPGPAPVSSPPMPSAEGPGPAGP-ESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLM 221
           AAPGPAPVSSPP PS E PGPAGP +SPTPSQNDNSGVEK WRKE+MVGS++IGMGYV +
Sbjct: 149 AAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFL 206

[Close]

BLAST of Carg16348 vs. ExPASy TrEMBL
Match: A0A0A0K6D8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071560 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.3e-36
Identity = 137/173 (79.19%), Postives = 151/173 (87.28%), Query Frame = 0


Query: 55  SAPPPATPPP---ATPPPAS--PPPATPPPASPPPATPPPASPPPATPPPASPPPATPPP 114
           S+PP ATP P   +TPPP S  PP ATPPPASPPPA+PPPASPPPATPPPASPPPA+PPP
Sbjct: 25  SSPPTATPSPPTTSTPPPVSSPPPAATPPPASPPPASPPPASPPPATPPPASPPPASPPP 84

Query: 115 ASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLK-AAPGPAPV 174
           ASPPPA+PPPA+PPPA+P    PPPATPPPAPLASPP AVPAPAPSKKK+K AAP P+PV
Sbjct: 85  ASPPPASPPPATPPPASP----PPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPV 144

Query: 175 SSPPMPSAEGPGPAGP-ESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMM 221
           SSPP PS E PGPAGP +SPTPSQNDNSGVEK WRKE+MVGS++IGMGYV +M
Sbjct: 145 SSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLM 193

[Close]

BLAST of Carg16348 vs. TAIR 10
Match: AT2G14890.1 (arabinogalactan protein 9 )

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-08
Identity = 105/184 (57.07%), Postives = 120/184 (65.22%), Query Frame = 0


Query: 46  PSSATPPPVSAPPPATPPP-ATPPPASPPPATPPPASPPPAT--PPPASPPP--ATPPPA 105
           P +ATP P   P P TPPP ATPPP S PP  P   SPPP T  PPPA+PPP  ++PPPA
Sbjct: 26  PPTATPAP---PTPTTPPPAATPPPVSAPP--PVTTSPPPVTTAPPPANPPPPVSSPPPA 85

Query: 106 SPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLK 165
           SPPPATPPP + PP  PP ASPPPATPPP     ATPPPAPLASPPA VPAPAP+ K   
Sbjct: 86  SPPPATPPPVASPP--PPVASPPPATPPPV----ATPPPAPLASPPAQVPAPAPTTK--P 145

Query: 166 AAPGPAPVSSPPMPSAEGPGPAGPE-SPTPSQ---NDNSGVEKSWRKETMVGSMLIGMGY 221
            +P P+P SSPP+PS++ PGP+    SP PS    ND +G  K      MV S++ G   
Sbjct: 146 DSPSPSPSSSPPLPSSDAPGPSTDSISPAPSPTDVNDQNGASK------MVSSLVFGSVL 190

[Close]

BLAST of Carg16348 vs. TAIR 10
Match: AT2G14890.2 (arabinogalactan protein 9 )

HSP 1 Score: 55.1 bits (131), Expect = 8.5e-08
Identity = 96/154 (62.34%), Postives = 108/154 (70.13%), Query Frame = 0


Query: 46  PSSATPPPVSAPPPATPPP-ATPPPASPPPATPPPASPPPAT--PPPASPPP--ATPPPA 105
           P +ATP P   P P TPPP ATPPP S PP  P   SPPP T  PPPA+PPP  ++PPPA
Sbjct: 26  PPTATPAP---PTPTTPPPAATPPPVSAPP--PVTTSPPPVTTAPPPANPPPPVSSPPPA 85

Query: 106 SPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLK 165
           SPPPATPPP + PP  PP ASPPPATPPP     ATPPPAPLASPPA VPAPAP+ K   
Sbjct: 86  SPPPATPPPVASPP--PPVASPPPATPPPV----ATPPPAPLASPPAQVPAPAPTTK--P 145

Query: 166 AAPGPAPVSSPPMPSAEGPGPAGPE-SPTPSQND 194
            +P P+P SSPP+PS++ PGP+    SP PS  D
Sbjct: 146 DSPSPSPSSSPPLPSSDAPGPSTDSISPAPSPTD 166

The following BLAST results are available for this feature:

BLAST of Carg16348 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011623.1	3.0e-92	100.00	hypothetical protein SDJN02_26529, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6571935.1	4.7e-61	92.23	hypothetical protein SDJN03_28663, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022952421.1	1.6e-56	95.45	classical arabinogalactan protein 9-like [Cucurbita moschata]	[more]
XP_023553858.1	2.1e-53	90.86	classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]	[more]
XP_022972415.1	8.7e-47	97.81	classical arabinogalactan protein 9-like [Cucurbita maxima]	[more]

BLAST of Carg16348 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5S0	3.1e-07	57.07	Classical arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=AGP9 PE=1...	[more]

BLAST of Carg16348 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GK65	7.6e-57	95.45	classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1I8J9	4.2e-47	97.81	classical arabinogalactan protein 9-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A5A7SJX5	1.0e-37	79.01	Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3BZW9	1.0e-37	79.01	classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103495292 PE=4...	[more]
A0A0A0K6D8	3.3e-36	79.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071560 PE=4 SV=1	[more]

BLAST of Carg16348 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14890.1	2.2e-08	57.07	arabinogalactan protein 9	[more]
AT2G14890.2	8.5e-08	62.34	arabinogalactan protein 9	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 75..92 score: 33.33 coord: 58..74 score: 38.82 coord: 37..58 score: 28.18 coord: 93..118 score: 45.38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..152
None	No IPR available	PANTHER	PTHR37209:SF1	CLASSICAL ARABINOGALACTAN PROTEIN 9	coord: 28..110 coord: 97..220
IPR044981	Lysine-rich arabinogalactan protein AGP9/17/18	PANTHER	PTHR37209	LYSINE-RICH ARABINOGALACTAN PROTEIN 17-RELATED	coord: 28..110 coord: 97..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16348-RA	Carg16348-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane