Carg16084 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCAATTGGTGCTAGATCTGTTTTCCGGTCATTTTCAGGCTCGGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCAAGTCGTCATCAAGTACTCCTTTTCGCATGGCAACTACGAAGCCTCTCTCCCATCGAACTTTCAGGTGCGTTGCTTAATGCTTTTGCGTCCATTTGAAGTGCCAAAGATTCTGTATCTAGAGATCTTGGAGTTTCTTTTCTCCAAAAGGAGTCAACGAAAACGGTGTTCCCATCTTCAAATTTATTTCTCTCAGTTTTTTAGTTGCGATACTAAGCTCTAGAACTTTGAAATGACAACAAGATAGCATTTCTCCTTTACCTTGTTTTTAAATAACGAACTCCGCAAAACGCTTCAATAAATTAGGTAATGTATTTTTCCTGAAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCTTCAGCTTTGATGACCTCAATGCTCTCTGTCTCGCGCAGCAGCTGCGGTTGGCTTCCCGAAGGTGCGTAA ATGGCTTCAATTGGTGCTAGATCTGTTTTCCGGTCATTTTCAGGCTCGGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCAAGTCGTCATCAAGTACTCCTTTTCGCATGGCAACTACGAAGCCTCTCTCCCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCTTCAGCTTTGATGACCTCAATGCTCTCTGTCTCGCGCAGCAGCTGCGGTTGGCTTCCCGAAGGTGCGTAA ATGGCTTCAATTGGTGCTAGATCTGTTTTCCGGTCATTTTCAGGCTCGGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCAAGTCGTCATCAAGTACTCCTTTTCGCATGGCAACTACGAAGCCTCTCTCCCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCTTCAGCTTTGATGACCTCAATGCTCTCTGTCTCGCGCAGCAGCTGCGGTTGGCTTCCCGAAGGTGCGTAA MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLESMMPFHSASSSALMTSMLSVSRSSCGWLPEGA Homology
BLAST of Carg16084 vs. NCBI nr
Match: KAG7010763.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 169.5 bits (428), Expect = 1.4e-38 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
BLAST of Carg16084 vs. NCBI nr
Match: XP_022943543.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita moschata] >XP_022943544.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita moschata]) HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37 Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0
BLAST of Carg16084 vs. NCBI nr
Match: XP_023512422.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023512423.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37 Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0
BLAST of Carg16084 vs. NCBI nr
Match: XP_022986409.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita maxima] >XP_022986410.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita maxima]) HSP 1 Score: 166.0 bits (419), Expect = 1.5e-37 Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0
BLAST of Carg16084 vs. NCBI nr
Match: XP_022943541.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 166.0 bits (419), Expect = 1.5e-37 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of Carg16084 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.0e-07 Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 0
BLAST of Carg16084 vs. ExPASy TrEMBL
Match: A0A6J1FX39 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111448284 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 5.6e-38 Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0
BLAST of Carg16084 vs. ExPASy TrEMBL
Match: A0A6J1JFZ5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111484153 PE=4 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 7.4e-38 Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0
BLAST of Carg16084 vs. ExPASy TrEMBL
Match: A0A6J1FS03 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448284 PE=4 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 7.4e-38 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of Carg16084 vs. ExPASy TrEMBL
Match: A0A6J1J7G1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484153 PE=4 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 9.6e-38 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of Carg16084 vs. ExPASy TrEMBL
Match: A0A6J1FTB0 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448284 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 3.7e-37 Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0
BLAST of Carg16084 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.9 bits (159), Expect = 2.0e-11 Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0
BLAST of Carg16084 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.9 bits (159), Expect = 2.0e-11 Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0
BLAST of Carg16084 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 65.9 bits (159), Expect = 2.0e-11 Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0
BLAST of Carg16084 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11 Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0
BLAST of Carg16084 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 63.5 bits (153), Expect = 9.9e-11 Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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