Carg15977 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15977
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmerozoite surface antigen 2-like
LocationCarg_Chr07: 2489671 .. 2490690 (+)
RNA-Seq ExpressionCarg15977
SyntenyCarg15977
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCCGCCGCCTTCCACCACCGTCCCCATCCGCCGCAGCGTCCCCACGTCCGTCGCTGAAGCCTGCCACCTTAATGTGTACCCAACTTCCATATCGTTGAAGTACATTCTGTACGCTAATTAATAAATAATTTGTTAAGAATCGTCAGCCTTAAATTTATTGGAAAAATATTTGAAAAGTATTTTGTTTTATTATTAATTTAGGGTATAAATAAAATAGAAACAAACAAGTTTCCAAGTAAAAAGTGGAAGAAGATGAACACAAGTCAACGGTTGGTTGCAGTTGGAATTTAATTCGTTCCATTACACCGTCCTCACGAACACGACCCTTCAGAATGGTATGATATTGTCCACTTTGAATATAAACTCTCGTGGCTTTATTTTAGACTTCCCCAAAGTGTTTCATACCAATAGAAAGTATTATTTGATTATAAATTAGTCGACGTGAAACTTTACTCATCCAACAATTATAAATACCACACTGAACAAATGAAACTCTTATTCATCATCTTAAATTTGATATCCGATGTACAAAGGATTCATTTCTCCTTAATTTAAATGAATATAAACGAGCTCATCACAACAACAAAAGAATCCTCAAATAATCATCACTATCAAAATACAAGAAAACACGACATCTAATATAAATAAATCGAAACCATATTCAAATGCAACGCAATCCCATCGCCTCTACGCTGCTAACATCACTGCCAACAGGCTTCCAGCCACAGCCATCCCCAACGTACCCGCACCGCCGATCTGTGATGCTGCTCCGGTTGGCTTGTCTGCTGGCGGTCCTTCCGGCGCTGATGAAGGAGGAGAAGCGACACGTGGCACAACAGGACCACCGGCTGGAGACCCAGAAGGAGTAATTGGAGCTGGAGTAGGCGCACTAGTCTCCGGAGCGGGTGTGGGCGACGCCGGAGTCAGAGAAGGAGCCGGCGTGGCTGGTGCCGGTGGTAGAGGCTGTGAAGGACCCAGAGCCGGTGCTGGTGCCGGTACCGGCGCCGGCGCCTGA

mRNA sequence

ATGATTCCGCCGCCTTCCACCACCGTCCCCATCCGCCGCAGCGTCCCCACGTCCGTCGCTGAAGCCTGCCACCTTAATGTGTACCCAACTTCCATATCGTTGAAGTACATTCTGCTTCCAGCCACAGCCATCCCCAACGTACCCGCACCGCCGATCTGTGATGCTGCTCCGGTTGGCTTGTCTGCTGGCGGTCCTTCCGGCGCTGATGAAGGAGGAGAAGCGACACGTGGCACAACAGGACCACCGGCTGGAGACCCAGAAGGAGTAATTGGAGCTGGAGTAGGCGCACTAGTCTCCGGAGCGGGTGTGGGCGACGCCGGAGTCAGAGAAGGAGCCGGCGTGGCTGGTGCCGGTGGTAGAGGCTGTGAAGGACCCAGAGCCGGTGCTGGTGCCGGTACCGGCGCCGGCGCCTGA

Coding sequence (CDS)

ATGATTCCGCCGCCTTCCACCACCGTCCCCATCCGCCGCAGCGTCCCCACGTCCGTCGCTGAAGCCTGCCACCTTAATGTGTACCCAACTTCCATATCGTTGAAGTACATTCTGCTTCCAGCCACAGCCATCCCCAACGTACCCGCACCGCCGATCTGTGATGCTGCTCCGGTTGGCTTGTCTGCTGGCGGTCCTTCCGGCGCTGATGAAGGAGGAGAAGCGACACGTGGCACAACAGGACCACCGGCTGGAGACCCAGAAGGAGTAATTGGAGCTGGAGTAGGCGCACTAGTCTCCGGAGCGGGTGTGGGCGACGCCGGAGTCAGAGAAGGAGCCGGCGTGGCTGGTGCCGGTGGTAGAGGCTGTGAAGGACCCAGAGCCGGTGCTGGTGCCGGTACCGGCGCCGGCGCCTGA

Protein sequence

MIPPPSTTVPIRRSVPTSVAEACHLNVYPTSISLKYILLPATAIPNVPAPPICDAAPVGLSAGGPSGADEGGEATRGTTGPPAGDPEGVIGAGVGALVSGAGVGDAGVREGAGVAGAGGRGCEGPRAGAGAGTGAGA
Homology
[Close]
BLAST of Carg15977 vs. NCBI nr
Match: KAG7026860.1 (hypothetical protein SDJN02_10867, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244.6 bits (623), Expect = 5.0e-61
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MIPPPSTTVPIRRSVPTSVAEACHLNVYPTSISLKYILLPATAIPNVPAPPICDAAPVGL 60
           MIPPPSTTVPIRRSVPTSVAEACHLNVYPTSISLKYILLPATAIPNVPAPPICDAAPVGL
Sbjct: 1   MIPPPSTTVPIRRSVPTSVAEACHLNVYPTSISLKYILLPATAIPNVPAPPICDAAPVGL 60

Query: 61  SAGGPSGADEGGEATRGTTGPPAGDPEGVIGAGVGALVSGAGVGDAGVREGAGVAGAGGR 120
           SAGGPSGADEGGEATRGTTGPPAGDPEGVIGAGVGALVSGAGVGDAGVREGAGVAGAGGR
Sbjct: 61  SAGGPSGADEGGEATRGTTGPPAGDPEGVIGAGVGALVSGAGVGDAGVREGAGVAGAGGR 120

Query: 121 GCEGPRAGAGAGTGAGA 138
           GCEGPRAGAGAGTGAGA
Sbjct: 121 GCEGPRAGAGAGTGAGA 137

[Close]
BLAST of Carg15977 vs. NCBI nr
Match: XP_022132682.1 (merozoite surface antigen 2-like [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 8.7e-05
Identity = 63/110 (57.27%), Postives = 64/110 (58.18%), Query Frame = 0 

Query: 39  LPATAIPNVPAPPICDAAPVGLSAGG----------PSGADEGGEATRGTTGPPAGDPEG 98
           +PA AIPNV A PICDAAP GLSAGG          P  A EGGE   G TG PAGDP G
Sbjct: 14  VPARAIPNVAARPICDAAPAGLSAGGGWGAGEGTGTPFPAGEGGEGKAG-TGAPAGDPLG 73

Query: 99  V-IGAGVGALVSGAGVGDAGVREGAGVAGAGGRGCEGPRAGAGAGTGAGA 138
             IG GVG  V GAG G AGV EGA  AG G  G  G   GA  G G GA
Sbjct: 74  EGIGVGVGVEV-GAGEGAAGVGEGASGAGEGDAGV-GAGDGALFGDGVGA 120

[Close]
BLAST of Carg15977 vs. ExPASy TrEMBL
Match: A0A6J1BUI4 (merozoite surface antigen 2-like OS=Momordica charantia OX=3673 GN=LOC111005482 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.2e-05
Identity = 63/110 (57.27%), Postives = 64/110 (58.18%), Query Frame = 0 

Query: 39  LPATAIPNVPAPPICDAAPVGLSAGG----------PSGADEGGEATRGTTGPPAGDPEG 98
           +PA AIPNV A PICDAAP GLSAGG          P  A EGGE   G TG PAGDP G
Sbjct: 14  VPARAIPNVAARPICDAAPAGLSAGGGWGAGEGTGTPFPAGEGGEGKAG-TGAPAGDPLG 73

Query: 99  V-IGAGVGALVSGAGVGDAGVREGAGVAGAGGRGCEGPRAGAGAGTGAGA 138
             IG GVG  V GAG G AGV EGA  AG G  G  G   GA  G G GA
Sbjct: 74  EGIGVGVGVEV-GAGEGAAGVGEGASGAGEGDAGV-GAGDGALFGDGVGA 120

The following BLAST results are available for this feature:
BLAST of Carg15977 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026860.15.0e-61100.00hypothetical protein SDJN02_10867, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022132682.18.7e-0557.27merozoite surface antigen 2-like [Momordica charantia][more]
BLAST of Carg15977 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15977 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BUI44.2e-0557.27merozoite surface antigen 2-like OS=Momordica charantia OX=3673 GN=LOC111005482 ... [more]
BLAST of Carg15977 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15977-RACarg15977-RAmRNA