Carg15455 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAGCATTCATCTTCACCAGCCCTTGGAAATGCTGCAAATCGATCGACAACGGATCGATAACCTCCTTGGTCGAAGACGAAGAAGCTATCGTCGACAAACACCGCCCACGAAAGCTGAGGGTGGCACCGGAGGGTTATTTCTCAGTCTACGTCGGAGTTGAAATGCAAAGGTTTGTGATCAAAGTTGAGCGAGCAAGCCATCCGCTGTTCAAGATGCTGCTCGACGAAGCGAAGCTCGAATATGGATATAACAGCCAAGCTCCTCTTTGGCTTCCATGCAAAGTTGGTAGGTTTTACAGAGTGTTGAGGAAGATGGATGATGGCTTTGATGTTCTCCATGGCCATGGAAGTCAAAAGCTTTACGGCTCTCATCATCTTTTTATCCCATCTCGTTGGATGGAATAA ATGAAAGCATTCATCTTCACCAGCCCTTGGAAATGCTGCAAATCGATCGACAACGGATCGATAACCTCCTTGGTCGAAGACGAAGAAGCTATCGTCGACAAACACCGCCCACGAAAGCTGAGGGTGGCACCGGAGGGTTATTTCTCAGTCTACGTCGGAGTTGAAATGCAAAGGTTTGTGATCAAAGTTGAGCGAGCAAGCCATCCGCTGTTCAAGATGCTGCTCGACGAAGCGAAGCTCGAATATGGATATAACAGCCAAGCTCCTCTTTGGCTTCCATGCAAAGTTGGTAGGTTTTACAGAGTGTTGAGGAAGATGGATGATGGCTTTGATGTTCTCCATGGCCATGGAAGTCAAAAGCTTTACGGCTCTCATCATCTTTTTATCCCATCTCGTTGGATGGAATAA ATGAAAGCATTCATCTTCACCAGCCCTTGGAAATGCTGCAAATCGATCGACAACGGATCGATAACCTCCTTGGTCGAAGACGAAGAAGCTATCGTCGACAAACACCGCCCACGAAAGCTGAGGGTGGCACCGGAGGGTTATTTCTCAGTCTACGTCGGAGTTGAAATGCAAAGGTTTGTGATCAAAGTTGAGCGAGCAAGCCATCCGCTGTTCAAGATGCTGCTCGACGAAGCGAAGCTCGAATATGGATATAACAGCCAAGCTCCTCTTTGGCTTCCATGCAAAGTTGGTAGGTTTTACAGAGTGTTGAGGAAGATGGATGATGGCTTTGATGTTCTCCATGGCCATGGAAGTCAAAAGCTTTACGGCTCTCATCATCTTTTTATCCCATCTCGTTGGATGGAATAA MKAFIFTSPWKCCKSIDNGSITSLVEDEEAIVDKHRPRKLRVAPEGYFSVYVGVEMQRFVIKVERASHPLFKMLLDEAKLEYGYNSQAPLWLPCKVGRFYRVLRKMDDGFDVLHGHGSQKLYGSHHLFIPSRWME Homology
BLAST of Carg15455 vs. NCBI nr
Match: KAG7029107.1 (Auxin-responsive protein SAUR71, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 290.4 bits (742), Expect = 7.9e-75 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg15455 vs. NCBI nr
Match: KAG6597664.1 (Auxin-responsive protein SAUR71, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 286.2 bits (731), Expect = 1.5e-73 Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0
BLAST of Carg15455 vs. NCBI nr
Match: XP_023539362.1 (auxin-responsive protein SAUR72-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 275.0 bits (702), Expect = 3.4e-70 Identity = 127/135 (94.07%), Postives = 131/135 (97.04%), Query Frame = 0
BLAST of Carg15455 vs. NCBI nr
Match: TQE05047.1 (hypothetical protein C1H46_009339 [Malus baccata]) HSP 1 Score: 127.9 bits (320), Expect = 6.7e-26 Identity = 71/144 (49.31%), Postives = 87/144 (60.42%), Query Frame = 0
BLAST of Carg15455 vs. NCBI nr
Match: XP_017179030.1 (auxin-responsive protein SAUR32-like [Malus domestica] >RXH71631.1 hypothetical protein DVH24_025132 [Malus domestica]) HSP 1 Score: 127.5 bits (319), Expect = 8.8e-26 Identity = 70/144 (48.61%), Postives = 87/144 (60.42%), Query Frame = 0
BLAST of Carg15455 vs. ExPASy Swiss-Prot
Match: Q9SGU2 (Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 2.4e-10 Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 0
BLAST of Carg15455 vs. ExPASy Swiss-Prot
Match: Q9LTV3 (Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=1 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 2.4e-10 Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 0
BLAST of Carg15455 vs. ExPASy Swiss-Prot
Match: Q9SA49 (Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09 Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 0
BLAST of Carg15455 vs. ExPASy Swiss-Prot
Match: P32295 (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 1.9e-07 Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 0
BLAST of Carg15455 vs. ExPASy Swiss-Prot
Match: O64538 (Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 2.5e-07 Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 0
BLAST of Carg15455 vs. ExPASy TrEMBL
Match: A0A540N1V8 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_009339 PE=3 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 3.3e-26 Identity = 71/144 (49.31%), Postives = 87/144 (60.42%), Query Frame = 0
BLAST of Carg15455 vs. ExPASy TrEMBL
Match: A0A498HR56 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_025132 PE=3 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26 Identity = 70/144 (48.61%), Postives = 87/144 (60.42%), Query Frame = 0
BLAST of Carg15455 vs. ExPASy TrEMBL
Match: A0A2I4DXF0 (auxin-responsive protein SAUR32-like OS=Juglans regia OX=51240 GN=LOC108984355 PE=3 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25 Identity = 68/144 (47.22%), Postives = 88/144 (61.11%), Query Frame = 0
BLAST of Carg15455 vs. ExPASy TrEMBL
Match: A0A5N6R404 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_009400 PE=3 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 1.6e-25 Identity = 73/149 (48.99%), Postives = 90/149 (60.40%), Query Frame = 0
BLAST of Carg15455 vs. ExPASy TrEMBL
Match: A0A6J1D5E1 (auxin-responsive protein SAUR71-like OS=Momordica charantia OX=3673 GN=LOC111017463 PE=3 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 2.1e-25 Identity = 70/138 (50.72%), Postives = 85/138 (61.59%), Query Frame = 0
BLAST of Carg15455 vs. TAIR 10
Match: AT5G50760.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 76.6 bits (187), Expect = 1.7e-14 Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 0
BLAST of Carg15455 vs. TAIR 10
Match: AT2G37030.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 68.2 bits (165), Expect = 5.9e-12 Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 0
BLAST of Carg15455 vs. TAIR 10
Match: AT5G20810.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 68.2 bits (165), Expect = 5.9e-12 Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 0
BLAST of Carg15455 vs. TAIR 10
Match: AT5G20810.2 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 68.2 bits (165), Expect = 5.9e-12 Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 0
BLAST of Carg15455 vs. TAIR 10
Match: AT1G56150.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11 Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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