Carg15280 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15280
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-binding protein S1FA-like
LocationCarg_Chr03: 9081990 .. 9085181 (+)
RNA-Seq ExpressionCarg15280
SyntenyCarg15280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTTTTCTGGAAGCTTTGGCGGTTCATGTCGTTGGTACATCACAAAAACAGGAACTCGTTGCGAAGGCCATCTCTCCGCTTCTGAATTTCAACCATGGAAGAAGATTTCGAGTTCGGTGACAAAGTCCCGCCGGCCGTCAACCGCATGGTACTCCAGAGCTCCCTTGAAAGTATCGCGATGTCATTTCTTTCTTGCTTGTTTGCCGCCTAATCTGAGATTCCTGTTAATGCAGCTTATCCTTTATTTTTCTCCAACGAAGTTATGATTTGGACATGGTTCTGGGGGTTTACTTTGAGGTTAACGTATCATTGTCGATATTTTCTGTTCGATTTCGCTCTTGAGATCTGATTGTCTCTGCAGTCGACTGTAGCAAATAATGCAGTTGAATTTTTTTTGGGATTTGCTCTTCGAGTACCCTTATAATGCAGTTGGATGTTCCGTTCCTTCTTGTATACACACCTTGCTAGGTGATTCCCTTGTATGCTTAGTTTTTAGGTGGATTTTCTTTGTTCTGATTGTGTACAATTCGGTATCAAATATCTACTTTTCTGAAGAATGGTGCTGTTTTTGCAATGTTTTTAGGATGATGCTGATGCATGTGATCATTGTGTTATTTGGAGTCGGAAAAGATTTAAAAAAACTGAACACCTTTTTTGCAATTTCCTGAAAATGGATGGAATTTTAAACTATAGGATGATACATGAATTTGTTAATTCGATCCTACATGTATGACCGAACTTAGAATTGGTGGATGGTTTAATTGTACCTATTCAGTTAATAAGAATAATAACAGTCCTGTTCAGTTCAGTTTTTCATATTGTTAGAGGATTTTCCGTGCATCTCTGATGTGGTATCCTCAGCATCTTTCGTAGCTAAGAATCAGATTAATGATTAGTTGGAGTACAAGGCTACAATTGATCTCCTTTTTGTGTTTACACATAACCTTGCTTGCATGAGATTGCTGAAGAAACCAGCCAGCTTCCTTTCTGGGGTGGTTCATGAGTTCCTTCTACAATTCTTGTTGTTGTGTATGTTCTGGTTCATGGTGACGAACAGTTAATATTGGCCTTGGTGCACAGGGGAACGTGATTGGAGATGCGGATGGAAGAGGATTCAATCCAGGACTGATTGTGCTGCTCGTAGTCGGCGGGCTGCTCTTGGCTTTTCTTGTTGTGAATTATGCTCTCTACATGTATGCGCAGAAGACCCTCCCACCACAAAAGAAGAACCAGTTTCCAAGAAGAAGATGAAAAGGGAGAGACTAAAGCAAGGTATCTCTGCACCTGGCGAGTAGGAGTTAGTGCTAGCCTTTTCTCTTATGTGCTATATTCCTGTGCCGCACTTGGGGGAACTAACAAGTTCTTCCATTTCAGTGATTGAAGAGTAGTTTTGTTTATGTTGTTAAGTTGTTCAGAATCTGAACATTATAACCGGAAGTTCATAGTCCCTTGTATCCTTAGAGATGAGAAATGATAGTAAGAGAGTAGTTTATATGGTATATTTTGATCCAATGCTGTTTGCCTTGCCTTTCTTGCCAATCCAAGGATTTTCTGATTCACATTGGCTACCAGGAATATACACAAAATAGATTAAGGAGAAGGGAATAGTTGGTAACTTGGACATGCTCACATTTAACAATATAGTTATAGTTCGATATGTTAGAGTTCTCCTAGCGATATTTGATTCGGTTTCTTGTTTGATTCTTTATTTCTTTTTGAGCTCGTAAACGTGTAAACGTGCCTGGTTTAAAGATACAAGAAATAGCACAATAATTTTTTAACATTCAAACTTTAGGAAACAAAGCTGGCCCTGGTGGCCAAGAATCTTCAACAAATTCTATACACAAAGGAACAAAATATTATTCACAAATAGGAAATGTCGTCTTATTCTGAAACCTCGTCAGAATATTTTTCCCTTTGAAAACTTAACATCCGAGACTCATCAGCCCCTAATACATTGCAGGTCAGCAGCAAGACGCCACTGCAAAAGAACATGGAAAGCAGGAGGAAGATGATCTCAGACTCCACGCCCCATGGACTGTTCTGCAGGTGGGATCATGACTAACACAGGACGAGCATTGAACCCTGGGTGAGGCATCCTCCGACGAAGTTCACGACCTTCCTGGCAAAGTGCACAGGTGTGACAGAAGACATGAGTTGCAAAGTCACAGACAGATTCACAGTGCTCACGCTGAACTTCGTCTTCAACACAGAGTCCGCAACAGCCACATGACCTATGAAGTGCCTCGCAGTTACCCTGCTCGTCATGAAACAAGGTAATGTATAAACTTTCCCATCAATTGAATTGAATGTCAAGTCATGCATTCATTTGCAGATATTGAGAATCAAGAATGGTAAAGGAGAAGGTTCAACTTGCCTCCAGATTGAACATTCGGCGGATAGCTGTGCGGGTAGGAAATGTAAACCATGGAGCAAGGCAGTTCCAACCAAAGAAAGAGGTTCCAATTAAGTAGAGACCAGAATATGACATGCAATGGTTTGCAAAAGTCCCAGGAGTAGACCCAAGTCTCTCTGCGTTGCTTCCATACAGCATACAAGGAGCCACACTTCCAATAAGACCTACAAACACTCATTGTAAGTTGCTTTCCCTTATTTTCTCCTAATTTCATTTCACTTTCTTCCCTAATTTTACCTCTTCAAGTTGAAGCAAGAAGTAAAACCCTAGTAGTCAATAGAAATCCCTCCCTAAAGAAGTTTATAGCAATACCCTCCTATAAATGTGTTGAATTCCTCCAGCCCCTCCTCCCCGTGAAAATAAGGATTCCTTTTCTTATTGTAATCCAGGCCCCATCGAGACCCCAAGGATCAGAATGGGTATTTATTGGAAGATTAAGGATTAGGGAACTTGTTTATTCAAACCAATTAAAAGTGATAAGAATGGTATTAGAGATCCAAGAATTCTGCATAGCCCAGATCTTATCTGAAACTCTATTTGAAGAAACAACAGAATACTCCTGCCTAAAGAAGTGCTAGCATATTAAGATCATGGTGGATAAGGCACCCTATCTAAAGTAAGAAGAAGAATATTTTGGTAGGAATAAGCTACAAACCCAAAAATCAGGGAAAACGAATCACGTATCCCCAAAGCCTAACCTTTCAGCAAAAACTCAATTCAAATGAAGAAAACGAATCGACTTACAAACTTCTAGATCGCTACTGCAGAACTCATC

mRNA sequence

TATTTTTCTGGAAGCTTTGGCGGTTCATGTCGTTGGTACATCACAAAAACAGGAACTCGTTGCGAAGGCCATCTCTCCGCTTCTGAATTTCAACCATGGAAGAAGATTTCGAGTTCGGTGACAAAGTCCCGCCGGCCGTCAACCGCATGGGGAACGTGATTGGAGATGCGGATGGAAGAGGATTCAATCCAGGACTGATTGTGCTGCTCGTAGTCGGCGGGCTGCTCTTGGCTTTTCTTGTTGTGAATTATGCTCTCTACATAAGACCCTCCCACCACAAAAGAAGAACCAGTTTCCAAGAAGAAGATGAAAAGGGAGAGACTAAAGCAAGGTATCTCTGCACCTGGCGAAATCTGAACATTATAACCGGAAGTCAGCAGCAAGACGCCACTGCAAAAGAACATGGAAAGCAGGAGGAAGATGATCTCAGACTCCACGCCCCATGGACTGTTCTGCAGATATTGAGAATCAAGAATGGTAAAGGAGAAGGTTCAACTTGCCTCCAGATTGAACATTCGGCGGATAGCTGTGCGGGCCCCATCGAGACCCCAAGGATCAGAATGGGTATTTATTGGAAGATTAAGGATTAGGGAACTTGTTTATTCAAACCAATTAAAAGTGATAAGAATGGTATTAGAGATCCAAGAATTCTGCATAGCCCAGATCTTATCTGAAACTCTATTTGAAGAAACAACAGAATACTCCTGCCTAAAGAAGTGCTAGCATATTAAGATCATGGTGGATAAGGCACCCTATCTAAAGTAAGAAGAAGAATATTTTGGTAGGAATAAGCTACAAACCCAAAAATCAGGGAAAACGAATCACGTATCCCCAAAGCCTAACCTTTCAGCAAAAACTCAATTCAAATGAAGAAAACGAATCGACTTACAAACTTCTAGATCGCTACTGCAGAACTCATC

Coding sequence (CDS)

ATGGAAGAAGATTTCGAGTTCGGTGACAAAGTCCCGCCGGCCGTCAACCGCATGGGGAACGTGATTGGAGATGCGGATGGAAGAGGATTCAATCCAGGACTGATTGTGCTGCTCGTAGTCGGCGGGCTGCTCTTGGCTTTTCTTGTTGTGAATTATGCTCTCTACATAAGACCCTCCCACCACAAAAGAAGAACCAGTTTCCAAGAAGAAGATGAAAAGGGAGAGACTAAAGCAAGGTATCTCTGCACCTGGCGAAATCTGAACATTATAACCGGAAGTCAGCAGCAAGACGCCACTGCAAAAGAACATGGAAAGCAGGAGGAAGATGATCTCAGACTCCACGCCCCATGGACTGTTCTGCAGATATTGAGAATCAAGAATGGTAAAGGAGAAGGTTCAACTTGCCTCCAGATTGAACATTCGGCGGATAGCTGTGCGGGCCCCATCGAGACCCCAAGGATCAGAATGGGTATTTATTGGAAGATTAAGGATTAG

Protein sequence

MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYIRPSHHKRRTSFQEEDEKGETKARYLCTWRNLNIITGSQQQDATAKEHGKQEEDDLRLHAPWTVLQILRIKNGKGEGSTCLQIEHSADSCAGPIETPRIRMGIYWKIKD
Homology
[Close]
BLAST of Carg15280 vs. NCBI nr
Match: KAG7034580.1 (hypothetical protein SDJN02_04310 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342.8 bits (878), Expect = 1.6e-90
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 

Query: 1   MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYIRPSH 60
           MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYIRPSH
Sbjct: 1   MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYIRPSH 60

Query: 61  HKRRTSFQEEDEKGETKARYLCTWRNLNIITGSQQQDATAKEHGKQEEDDLRLHAPWTVL 120
           HKRRTSFQEEDEKGETKARYLCTWRNLNIITGSQQQDATAKEHGKQEEDDLRLHAPWTVL
Sbjct: 61  HKRRTSFQEEDEKGETKARYLCTWRNLNIITGSQQQDATAKEHGKQEEDDLRLHAPWTVL 120

Query: 121 QILRIKNGKGEGSTCLQIEHSADSCAGPIETPRIRMGIYWKIKD 165
           QILRIKNGKGEGSTCLQIEHSADSCAGPIETPRIRMGIYWKIKD
Sbjct: 121 QILRIKNGKGEGSTCLQIEHSADSCAGPIETPRIRMGIYWKIKD 164

[Close]
BLAST of Carg15280 vs. NCBI nr
Match: KAG6604436.1 (DNA-binding protein S1FA2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-21
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI 57
          MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY+
Sbjct: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYM 56

[Close]
BLAST of Carg15280 vs. NCBI nr
Match: XP_022926041.1 (DNA-binding protein S1FA-like [Cucurbita moschata])

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-21
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI 57
          MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY+
Sbjct: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYM 56

[Close]
BLAST of Carg15280 vs. NCBI nr
Match: XP_022979165.1 (DNA-binding protein S1FA-like [Cucurbita maxima])

HSP 1 Score: 104.4 bits (259), Expect = 9.7e-19
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 0 

Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI 57
          MEEDFE G+KVPPAVNRMGNVIGDADGRGFNPGLIV LVVGGLLLAFLVVNYA Y+
Sbjct: 1  MEEDFELGEKVPPAVNRMGNVIGDADGRGFNPGLIVRLVVGGLLLAFLVVNYAFYM 56

[Close]
BLAST of Carg15280 vs. NCBI nr
Match: XP_038881351.1 (DNA-binding protein S1FA-like [Benincasa hispida])

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-17
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI 57
          ME+DF+FGDKVPPAVNRMGNVI DAD RGFNPGLIVLLVVGGLLLAFL  NYALY+
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDADARGFNPGLIVLLVVGGLLLAFLAGNYALYM 56

[Close]
BLAST of Carg15280 vs. ExPASy Swiss-Prot
Match: P42551 (DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-04
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 25 ADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI 57
          A+ +G NPGLIVLLVVGG LL FL+ NY LY+
Sbjct: 12 AEAKGLNPGLIVLLVVGGPLLVFLIANYVLYV 43

[Close]
BLAST of Carg15280 vs. ExPASy Swiss-Prot
Match: P42552 (DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.1e-04
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0 

Query: 22 IGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY 56
          + + + +G NPGLIVLLV+GGLLL FLV N+ LY
Sbjct: 3  VNEVEAKGLNPGLIVLLVIGGLLLTFLVGNFILY 36

[Close]
BLAST of Carg15280 vs. ExPASy Swiss-Prot
Match: Q93VI0 (DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.1e-04
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 23 GDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY 56
          G  + +G NPGLIVLLV+GGLLL FLV N+ LY
Sbjct: 7  GKIESKGLNPGLIVLLVIGGLLLTFLVGNFILY 39

[Close]
BLAST of Carg15280 vs. ExPASy Swiss-Prot
Match: Q42337 (DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 5.4e-04
Identity = 19/31 (61.29%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 26 DGRGFNPGLIVLLVVGGLLLAFLVVNYALYI 57
          + +G NPGLIVLLV+GGLL+ FL+ NY +Y+
Sbjct: 13 EAKGLNPGLIVLLVIGGLLVTFLIANYVMYM 43

[Close]
BLAST of Carg15280 vs. ExPASy TrEMBL
Match: A0A6J1EDS2 (DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111433279 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.3e-21
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI 57
          MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY+
Sbjct: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYM 56

[Close]
BLAST of Carg15280 vs. ExPASy TrEMBL
Match: A0A6J1ISG2 (DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111478884 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.7e-19
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 0 

Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI 57
          MEEDFE G+KVPPAVNRMGNVIGDADGRGFNPGLIV LVVGGLLLAFLVVNYA Y+
Sbjct: 1  MEEDFELGEKVPPAVNRMGNVIGDADGRGFNPGLIVRLVVGGLLLAFLVVNYAFYM 56

[Close]
BLAST of Carg15280 vs. ExPASy TrEMBL
Match: A0A6J1I6D0 (DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111471126 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI 57
          ME+DF+FGDKVPPAVNRMGNVI D+D RGFNPGLIVLLVVGGLLLAFL  NYALY+
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDSDARGFNPGLIVLLVVGGLLLAFLAGNYALYV 56

[Close]
BLAST of Carg15280 vs. ExPASy TrEMBL
Match: A0A6J1HDT2 (DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111463054 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-17
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI 57
          ME+DF+FGDKVPPAVNRMGNVI +AD RGFNPGLIVLLVVGGLLLAFL  NYALY+
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYV 56

[Close]
BLAST of Carg15280 vs. ExPASy TrEMBL
Match: A0A0A0KEM3 (DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_6G445000 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.5e-17
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI 57
          ME+DF+FGDKVPPAVNRMGNVI D + RGFNPGLIVLLVVGGLL AFLV NYALY+
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYM 56

[Close]
BLAST of Carg15280 vs. TAIR 10
Match: AT3G53370.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-05
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 25 ADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI 57
          A+ +G NPGLIVLLVVGG LL FL+ NY LY+
Sbjct: 12 AEAKGLNPGLIVLLVVGGPLLVFLIANYVLYV 43

[Close]
BLAST of Carg15280 vs. TAIR 10
Match: AT3G09735.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-05
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 23 GDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY 56
          G  + +G NPGLIVLLV+GGLLL FLV N+ LY
Sbjct: 7  GKIESKGLNPGLIVLLVIGGLLLTFLVGNFILY 39

[Close]
BLAST of Carg15280 vs. TAIR 10
Match: AT2G37120.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 45.8 bits (107), Expect = 3.8e-05
Identity = 19/31 (61.29%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 26 DGRGFNPGLIVLLVVGGLLLAFLVVNYALYI 57
          + +G NPGLIVLLV+GGLL+ FL+ NY +Y+
Sbjct: 13 EAKGLNPGLIVLLVIGGLLVTFLIANYVMYM 43

The following BLAST results are available for this feature:
BLAST of Carg15280 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034580.11.6e-90100.00hypothetical protein SDJN02_04310 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6604436.14.6e-2198.21DNA-binding protein S1FA2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022926041.14.6e-2198.21DNA-binding protein S1FA-like [Cucurbita moschata][more]
XP_022979165.19.7e-1991.07DNA-binding protein S1FA-like [Cucurbita maxima][more]
XP_038881351.11.8e-1787.50DNA-binding protein S1FA-like [Benincasa hispida][more]
BLAST of Carg15280 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P425511.4e-0468.75DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2[more]
P425523.1e-0461.76DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1[more]
Q93VI04.1e-0466.67DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1[more]
Q423375.4e-0461.29DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2[more]
BLAST of Carg15280 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EDS22.3e-2198.21DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111433279 PE=3... [more]
A0A6J1ISG24.7e-1991.07DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111478884 PE=3 S... [more]
A0A6J1I6D01.2e-1785.71DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111471126 PE=3 S... [more]
A0A6J1HDT21.5e-1785.71DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111463054 PE=3... [more]
A0A0A0KEM37.5e-1783.93DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_6G445000 PE=3 SV=1[more]
BLAST of Carg15280 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G53370.11.0e-0568.75S1FA-like DNA-binding protein [more]
AT3G09735.12.9e-0566.67S1FA-like DNA-binding protein [more]
AT2G37120.13.8e-0561.29S1FA-like DNA-binding protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006779DNA binding protein S1FAPFAMPF04689S1FAcoord: 25..56
e-value: 7.8E-13
score: 48.4
IPR006779DNA binding protein S1FAPANTHERPTHR35298DNA-BINDING PROTEIN S1FA2coord: 3..56
NoneNo IPR availablePANTHERPTHR35298:SF9DNA-BINDING PROTEIN S1FA1-RELATEDcoord: 3..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15280-RACarg15280-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding