Carg14510 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14510
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal protein S21 family protein
Location	Carg_Chr18: 8156952 .. 8157272 (-)
RNA-Seq Expression	Carg14510
Synteny	Carg14510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCGTTGGCGCGGAACATATCGTGCTCCATCAGGTCTTCGATTCACGCCACTGCCTCGCTACATTGCTACCAGCAGCAATGGAGGGGGATCCGAGTGAAGGTACTGAACGGGAATCTTGAACGGGCAATAACATTCTTGCAAAGGAAGATGCGATCGAGCGGAATCGAGCGGCTGATTAAGCGCGAGCAGACTCACCACATCAAGAACTCAGAGAAGCGAGTTTTGGCCCGAAAGAATTTGGAGCGCAAAATTAGATCACAGGACCTTGCTCGCAAGCTTAAAGCCATTCTTATCAAGAAAGTCAGGTATTTGTAG

mRNA sequence

ATGAACTCGTTGGCGCGGAACATATCGTGCTCCATCAGGTCTTCGATTCACGCCACTGCCTCGCTACATTGCTACCAGCAGCAATGGAGGGGGATCCGAGTGAAGGTACTGAACGGGAATCTTGAACGGGCAATAACATTCTTGCAAAGGAAGATGCGATCGAGCGGAATCGAGCGGCTGATTAAGCGCGAGCAGACTCACCACATCAAGAACTCAGAGAAGCGAGTTTTGGCCCGAAAGAATTTGGAGCGCAAAATTAGATCACAGGACCTTGCTCGCAAGCTTAAAGCCATTCTTATCAAGAAAGTCAGGTATTTGTAG

Coding sequence (CDS)

ATGAACTCGTTGGCGCGGAACATATCGTGCTCCATCAGGTCTTCGATTCACGCCACTGCCTCGCTACATTGCTACCAGCAGCAATGGAGGGGGATCCGAGTGAAGGTACTGAACGGGAATCTTGAACGGGCAATAACATTCTTGCAAAGGAAGATGCGATCGAGCGGAATCGAGCGGCTGATTAAGCGCGAGCAGACTCACCACATCAAGAACTCAGAGAAGCGAGTTTTGGCCCGAAAGAATTTGGAGCGCAAAATTAGATCACAGGACCTTGCTCGCAAGCTTAAAGCCATTCTTATCAAGAAAGTCAGGTATTTGTAG

Protein sequence

MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRYL

Homology

[Close]

BLAST of Carg14510 vs. NCBI nr
Match: KAG7012773.1 (hypothetical protein SDJN02_25526, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.7 bits (504), Expect = 2.4e-47
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60
           MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL
Sbjct: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRYL 107
           IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRYL
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRYL 106

[Close]

BLAST of Carg14510 vs. NCBI nr
Match: KAG6573697.1 (hypothetical protein SDJN03_27584, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.9 bits (494), Expect = 3.5e-46
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60
           MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL
Sbjct: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRYL 107
           IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVR L
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 106

[Close]

BLAST of Carg14510 vs. NCBI nr
Match: XP_022945130.1 (uncharacterized protein LOC111449463 [Cucurbita moschata] >XP_023541241.1 uncharacterized protein LOC111801465 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.9 bits (494), Expect = 3.5e-46
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60
           MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL
Sbjct: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRYL 107
           IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVR L
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 106

[Close]

BLAST of Carg14510 vs. NCBI nr
Match: XP_022966846.1 (uncharacterized protein LOC111466431 [Cucurbita maxima])

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60
           MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKM+SSGIERL
Sbjct: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMQSSGIERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRYL 107
           IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVR L
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 106

[Close]

BLAST of Carg14510 vs. NCBI nr
Match: KAG6581566.1 (Cycloartenol-C-24-methyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.2 bits (435), Expect = 2.4e-39
Identity = 95/108 (87.96%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATA--SLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIE 60
           MNSL+RN+SCSIRSS+H      LH  QQQWRGIRVKVLNGNLERA+TFLQRKMRSSGIE
Sbjct: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRYL 107
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVR L
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

[Close]

BLAST of Carg14510 vs. ExPASy TrEMBL
Match: A0A6J1G018 (uncharacterized protein LOC111449463 OS=Cucurbita moschata OX=3662 GN=LOC111449463 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.7e-46
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60
           MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL
Sbjct: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRYL 107
           IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVR L
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 106

[Close]

BLAST of Carg14510 vs. ExPASy TrEMBL
Match: A0A6J1HQF3 (uncharacterized protein LOC111466431 OS=Cucurbita maxima OX=3661 GN=LOC111466431 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.0e-46
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60
           MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKM+SSGIERL
Sbjct: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMQSSGIERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRYL 107
           IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVR L
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 106

[Close]

BLAST of Carg14510 vs. ExPASy TrEMBL
Match: A0A6J1DEG8 (uncharacterized protein LOC111019699 OS=Momordica charantia OX=3673 GN=LOC111019699 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 96/112 (85.71%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATAS------LHCYQQQWRGIRVKVLNGNLERAITFLQRKMRS 60
           MNSLARN+SC IR SIH T S      LHC QQQWRGIRVKVLNGNLERA+ FLQRKM+S
Sbjct: 1   MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQS 60

Query: 61  SGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRYL 107
           SGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVR L
Sbjct: 61  SGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 112

[Close]

BLAST of Carg14510 vs. ExPASy TrEMBL
Match: A0A6J1F3V2 (uncharacterized protein LOC111441929 OS=Cucurbita moschata OX=3662 GN=LOC111441929 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 95/108 (87.96%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATA--SLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIE 60
           MNSL+RN+SCSIRSS+H      LH  QQQWRGIRVKVLNGNLERA+TFLQRKMRSSGIE
Sbjct: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRYL 107
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVR L
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

[Close]

BLAST of Carg14510 vs. ExPASy TrEMBL
Match: A0A6J1J5L6 (uncharacterized protein LOC111481507 OS=Cucurbita maxima OX=3661 GN=LOC111481507 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.5e-39
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATA--SLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIE 60
           MNSL+RN+SCSIRSS+H      LH  QQQWRGIRVKVLNGNLERA+TFLQRKM+SSGIE
Sbjct: 1   MNSLSRNLSCSIRSSMHTNCLKHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMQSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRYL 107
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVR L
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

[Close]

BLAST of Carg14510 vs. TAIR 10
Match: AT3G26360.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 108.6 bits (270), Expect = 3.1e-24
Identity = 63/106 (59.43%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60
           MN++A+ +     + +    SL+   QQ RGIRVKV + +L++A+T LQ+KM+SSG+ERL
Sbjct: 1   MNTIAKRV-----TGLVTRPSLNQQLQQERGIRVKVFSNDLDKALTILQKKMQSSGMERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRYL 107
           IK  QTHHIKNSEK+VLARKNLER+I+S D ARKL++ILIKKVR L
Sbjct: 61  IKGTQTHHIKNSEKKVLARKNLERRIKSIDFARKLQSILIKKVRGL 101

The following BLAST results are available for this feature:

BLAST of Carg14510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012773.1	2.4e-47	100.00	hypothetical protein SDJN02_25526, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6573697.1	3.5e-46	99.06	hypothetical protein SDJN03_27584, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022945130.1	3.5e-46	99.06	uncharacterized protein LOC111449463 [Cucurbita moschata] >XP_023541241.1 unchar...	[more]
XP_022966846.1	1.0e-45	98.11	uncharacterized protein LOC111466431 [Cucurbita maxima]	[more]
KAG6581566.1	2.4e-39	87.96	Cycloartenol-C-24-methyltransferase, partial [Cucurbita argyrosperma subsp. soro...	[more]

BLAST of Carg14510 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G018	1.7e-46	99.06	uncharacterized protein LOC111449463 OS=Cucurbita moschata OX=3662 GN=LOC1114494...	[more]
A0A6J1HQF3	5.0e-46	98.11	uncharacterized protein LOC111466431 OS=Cucurbita maxima OX=3661 GN=LOC111466431...	[more]
A0A6J1DEG8	1.2e-39	85.71	uncharacterized protein LOC111019699 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1F3V2	1.2e-39	87.96	uncharacterized protein LOC111441929 OS=Cucurbita moschata OX=3662 GN=LOC1114419...	[more]
A0A6J1J5L6	4.5e-39	87.04	uncharacterized protein LOC111481507 OS=Cucurbita maxima OX=3661 GN=LOC111481507...	[more]

BLAST of Carg14510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26360.1	3.1e-24	59.43	Ribosomal protein S21 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 34..87 e-value: 2.4E-12 score: 46.4
None	No IPR available	PANTHER	PTHR37228:SF1	RIBOSOMAL PROTEIN S21 FAMILY PROTEIN	coord: 1..104
None	No IPR available	PANTHER	PTHR37228	RIBOSOMAL PROTEIN S21 FAMILY PROTEIN	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14510-RA	Carg14510-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome